CmoCh10G011100 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G011100
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Photosystem II D2 protein
Location	Cmo_Chr10: 6790104 .. 6791033 (+)
RNA-Seq Expression	CmoCh10G011100
Synteny	CmoCh10G011100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCCGTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGCAACTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCTAAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGTAGAGAGAGAGGGAGAAATGAGAGGAGCGCGAGTAGGAAGAACAGTTGGAAAAATGCTTGAGCAATGGGGATAGCATGTGTATTATATGCTTGAGCCCTGGAGTGTAGACATAATTTTGGTGAACCGTCATGCACCTCTATGTTAACATAACATGAATACTAAAGGTCTATCTAAGAATGTAAAAGGAGTTTGGAATGGACATGCGACCATAGGCAACACGTCCTGGACAAGCATGACCTGACACTATGTACCCTCCTTGTTGCATTGTGCTTTACGTATCGTTTGTACTTATGTGTCGTTGCAGTGAATCAAAGAGCTTTTTAATGTTTTTTTTTTTTTTTTGGGATAGATTCATCCTTATCATTTTATTTAA

mRNA sequence

ATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCCGTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGCAACTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGTAGAGAGAGAGGGAGAAATGAGAGGAGCGCGAATTCATCCTTATCATTTTATTTAA

Coding sequence (CDS)

ATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCCGTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGCAACTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGTAGAGAGAGAGGGAGAAATGAGAGGAGCGCGAATTCATCCTTATCATTTTATTTAA

Protein sequence

MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVAVEREGEMRGARIHPYHFI

Homology

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BLAST of CmoCh10G011100 vs. ExPASy Swiss-Prot
Match: P69685 (Photosystem II D2 protein OS=Antirrhinum majus OX=4151 GN=psbD PE=1 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 9.9e-92
Identity = 164/185 (88.65%), Postives = 164/185 (88.65%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQS---------------------GFHNWTLNPFH 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQS                     GFHNWTLNPFH
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198

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BLAST of CmoCh10G011100 vs. ExPASy Swiss-Prot
Match: Q8S8X8 (Photosystem II D2 protein OS=Atropa belladonna OX=33113 GN=psbD PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 9.9e-92
Identity = 164/185 (88.65%), Postives = 164/185 (88.65%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQS---------------------GFHNWTLNPFH 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQS                     GFHNWTLNPFH
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198

[Close]

BLAST of CmoCh10G011100 vs. ExPASy Swiss-Prot
Match: B5LMM1 (Photosystem II D2 protein OS=Cicer arietinum OX=3827 GN=psbD PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 9.9e-92
Identity = 164/185 (88.65%), Postives = 164/185 (88.65%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQS---------------------GFHNWTLNPFH 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQS                     GFHNWTLNPFH
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198

[Close]

BLAST of CmoCh10G011100 vs. ExPASy Swiss-Prot
Match: Q4VZN8 (Photosystem II D2 protein OS=Cucumis sativus OX=3659 GN=psbD PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 9.9e-92
Identity = 164/185 (88.65%), Postives = 164/185 (88.65%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQS---------------------GFHNWTLNPFH 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQS                     GFHNWTLNPFH
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198

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BLAST of CmoCh10G011100 vs. ExPASy Swiss-Prot
Match: Q0G9W7 (Photosystem II D2 protein OS=Daucus carota OX=4039 GN=psbD PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 9.9e-92
Identity = 164/185 (88.65%), Postives = 164/185 (88.65%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQS---------------------GFHNWTLNPFH 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQS                     GFHNWTLNPFH
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198

[Close]

BLAST of CmoCh10G011100 vs. ExPASy TrEMBL
Match: A0A445D9F8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g025796 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 3.9e-91
Identity = 161/164 (98.17%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLFPCAYFA+GGWFTGTTFVTSWYTHGLASSYLEGCN LTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNLLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAF LIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFALIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA 182

[Close]

BLAST of CmoCh10G011100 vs. ExPASy TrEMBL
Match: A0A445D2V8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g023269 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.3e-90
Identity = 160/164 (97.56%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLF CAYFA+GGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFSCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVAL+GAF LIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALYGAFALIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA 182

[Close]

BLAST of CmoCh10G011100 vs. ExPASy TrEMBL
Match: K3Z2T5 (Photosystem II OS=Setaria italica OX=4555 PE=3 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.6e-89
Identity = 161/170 (94.71%), Postives = 163/170 (95.88%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLFPCAYFA+GGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA
Sbjct: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAF LIGFMLRQFELARSVQ
Sbjct: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFALIGFMLRQFELARSVQ 120

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQSG------FHNWTLNPFHMMGVA 165
           LRPYNAI+FSGPIAVFVSVFLIYPLGQSG      FHNWTLNPFHMMGVA
Sbjct: 121 LRPYNAISFSGPIAVFVSVFLIYPLGQSGWFFAPRFHNWTLNPFHMMGVA 170

[Close]

BLAST of CmoCh10G011100 vs. ExPASy TrEMBL
Match: A0A218KG45 (Photosystem II D2 protein OS=Cucumis sativus var. hardwickii OX=319220 GN=psbD PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.7e-89
Identity = 164/185 (88.65%), Postives = 164/185 (88.65%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQS---------------------GFHNWTLNPFH 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQS                     GFHNWTLNPFH
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198

[Close]

BLAST of CmoCh10G011100 vs. ExPASy TrEMBL
Match: A0A1U9YE55 (Photosystem II D2 protein OS=Rehmannia glutinosa OX=99300 GN=psbD PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.7e-89
Identity = 164/185 (88.65%), Postives = 164/185 (88.65%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQS---------------------GFHNWTLNPFH 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQS                     GFHNWTLNPFH
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198

[Close]

BLAST of CmoCh10G011100 vs. NCBI nr
Match: KAG6540661.1 (hypothetical protein Mapa_017993 [Marchantia paleacea])

HSP 1 Score: 348.6 bits (893), Expect = 3.3e-92
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLFPCAYFA+GGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA 182

[Close]

BLAST of CmoCh10G011100 vs. NCBI nr
Match: RYR59818.1 (hypothetical protein Ahy_A05g025796 isoform B [Arachis hypogaea])

HSP 1 Score: 344.0 bits (881), Expect = 8.1e-91
Identity = 161/164 (98.17%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLFPCAYFA+GGWFTGTTFVTSWYTHGLASSYLEGCN LTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNLLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAF LIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFALIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA 182

[Close]

BLAST of CmoCh10G011100 vs. NCBI nr
Match: RYR57567.1 (hypothetical protein Ahy_A05g023269 isoform A [Arachis hypogaea])

HSP 1 Score: 340.9 bits (873), Expect = 6.8e-90
Identity = 160/164 (97.56%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLF CAYFA+GGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFSCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVAL+GAF LIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALYGAFALIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGFHNWTLNPFHMMGVA 182

[Close]

BLAST of CmoCh10G011100 vs. NCBI nr
Match: YP_001936512.1 (photosystem II protein D2 [Fagopyrum esculentum subsp. ancestrale] >YP_009142045.1 PsbD [Fagopyrum tataricum] >YP_009271377.1 PsbD [Taraxacum officinale] >YP_009307474.1 PsbD [Taraxacum platycarpum] >YP_009307561.1 PsbD [Taraxacum mongolicum] >YP_009316540.1 photosystem II protein D2 [Taraxacum obtusifrons] >YP_009316625.1 photosystem II protein D2 [Taraxacum amplum] >YP_009327481.1 photosystem II protein D2 [Taraxacum brevicorniculatum] >YP_009327563.1 photosystem II protein D2 [Taraxacum kok-saghyz] >YP_009484524.1 photosystem II protein D2 [Fagopyrum dibotrys] >YP_009627261.1 photosystem II D2 protein [Crepidiastrum denticulatum] >YP_009632443.1 photosystem II protein D2 [Sonchus boulosii] >YP_009640843.1 photosystem II protein D2 [Sonchus canariensis] >YP_009640930.1 photosystem II protein D2 [Sonchus acaulis] >YP_009641017.1 photosystem II protein D2 [Sonchus webbii] >YP_009672492.1 photosystem II protein D2 [Cichorium intybus] >YP_009695542.1 PsbD [Hypochaeris radicata] >YP_009739910.1 PsbD [Crepidiastrum sonchifolium] >YP_009739997.1 PsbD [Ixeris polycephala] >YP_009740081.1 photosystem II protein D2 [Lapsanastrum humile] >YP_009740167.1 photosystem II protein D2 [Youngia japonica] >YP_009825255.1 photosystem II protein D2 [Sonchus oleraceus] >YP_009828158.1 photosystem II protein D2 [Sonchus asper] >YP_009971011.1 photosystem II protein D2 [Dendroseris pruinata] >YP_009971098.1 photosystem II protein D2 [Dendroseris micrantha] >YP_009971185.1 photosystem II protein D2 [Dendroseris litoralis] >YP_009971272.1 photosystem II protein D2 [Dendroseris berteroana] >YP_009971359.1 photosystem II protein D2 [Dendroseris macrantha] >YP_009971446.1 photosystem II protein D2 [Dendroseris marginata] >YP_009971533.1 photosystem II protein D2 [Dendroseris pinnata] >YP_010038709.1 photosystem II protein D2 [Sonchus arvensis] >YP_010148626.1 photosystem II protein D2 [Taraxacum hallaisanense] >YP_010148710.1 photosystem II protein D2 [Ixeris repens] >YP_398324.2 photosystem II protein D2 [Lactuca sativa] >XP_042755103.1 photosystem II D2 protein [Lactuca sativa] >B2XWK0.1 RecName: Full=Photosystem II D2 protein; Short=PSII D2 protein; AltName: Full=Photosystem Q(A) protein [Fagopyrum esculentum subsp. ancestrale] >Q56P05.1 RecName: Full=Photosystem II D2 protein; Short=PSII D2 protein; AltName: Full=Photosystem Q(A) protein [Lactuca sativa] >AJE74472.1 photosystem II protein D2 [Lactuca ludoviciana] >AJE74624.1 photosystem II protein D2 [Lygodesmia juncea] >AKJ77660.1 photosystem II protein D2 [Fagopyrum cymosum] >AOV93736.1 photosystem II protein D2 [Taraxacum sp. RHS-2016] >QKQ11925.1 photosystem II protein D2 [Fagopyrum esculentum] >QNZ92289.1 photosystem II protein D2 [Lactuca sativa var. angustana] >QTA72100.1 PsbD [Taraxacum coreanum] >QTA72274.1 PsbD [Taraxacum erythrospermum] >QWE49940.1 photosystem II protein D2 [Sonchus leptocephalus] >QYC93366.1 photosystem II protein D2 [Sonchus tenerrimus] >QYC93453.1 photosystem II protein D2 [Sonchus pustulatus] >QYC93627.1 photosystem II protein D2 [Sonchus novae-zelandiae] >QYC93714.1 photosystem II protein D2 [Sonchus megalocarpus] >QYC93801.1 photosystem II protein D2 [Sonchus masguindalii] >QYC93871.1 photosystem II protein D2 [Sonchus grandifolius] >QYC93975.1 photosystem II protein D2 [Sonchus fragilis] >QYC94062.1 photosystem II protein D2 [Sonchus bupleuroides] >QZP42069.1 photosystem II protein D2 [Lactuca tatarica] >QZP42156.1 photosystem II protein D2 [Sonchus brachyotus])

HSP 1 Score: 337.4 bits (864), Expect = 7.6e-89
Identity = 164/185 (88.65%), Postives = 164/185 (88.65%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQS---------------------GFHNWTLNPFH 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQS                     GFHNWTLNPFH
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198

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BLAST of CmoCh10G011100 vs. NCBI nr
Match: AJE75080.1 (photosystem II protein D2 [Tragopogon dubius])

HSP 1 Score: 337.4 bits (864), Expect = 7.6e-89
Identity = 164/185 (88.65%), Postives = 164/185 (88.65%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQS---------------------GFHNWTLNPFH 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQS                     GFHNWTLNPFH
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198

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BLAST of CmoCh10G011100 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 332.0 bits (850), Expect = 3.0e-91
Identity = 161/185 (87.03%), Postives = 162/185 (87.57%), Query Frame = 0


Query: 1   MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 60
           MDDWLRRDRFVFVGWSGLLLFPCAYFA+GGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAA 78

Query: 61  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 120
           VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLW FVALHGAF LIGFMLRQFELARSVQ
Sbjct: 79  VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWAFVALHGAFALIGFMLRQFELARSVQ 138

Query: 121 LRPYNAIAFSGPIAVFVSVFLIYPLGQS---------------------GFHNWTLNPFH 165
           LRPYNAIAFSGPIAVFVSVFLIYPLGQS                     GFHNWTLNPFH
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198

[Close]

BLAST of CmoCh10G011100 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 75.1 bits (183), Expect = 6.5e-14
Identity = 48/179 (26.82%), Postives = 81/179 (45.25%), Query Frame = 0


Query: 11  VFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 70
           +++GW G+L+ P    A   +             G+    + S L G N ++ A+   + 
Sbjct: 28  LYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSA 87

Query: 71  SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 130
           ++      +W          W   GG +  + LH   G+  +M R++EL+  + +RP+ A
Sbjct: 88  AIGLHFYPIW---EAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIA 147

Query: 131 IAFSGPIAVFVSVFLIYPLGQSGF---------------------HNWTLNPFHMMGVA 165
           +A+S P+A   +VFLIYP+GQ  F                     HN  ++PFHM+GVA
Sbjct: 148 VAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVA 203

The following BLAST results are available for this feature:

BLAST of CmoCh10G011100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P69685	9.9e-92	88.65	Photosystem II D2 protein OS=Antirrhinum majus OX=4151 GN=psbD PE=1 SV=1	[more]
Q8S8X8	9.9e-92	88.65	Photosystem II D2 protein OS=Atropa belladonna OX=33113 GN=psbD PE=3 SV=1	[more]
B5LMM1	9.9e-92	88.65	Photosystem II D2 protein OS=Cicer arietinum OX=3827 GN=psbD PE=3 SV=1	[more]
Q4VZN8	9.9e-92	88.65	Photosystem II D2 protein OS=Cucumis sativus OX=3659 GN=psbD PE=3 SV=1	[more]
Q0G9W7	9.9e-92	88.65	Photosystem II D2 protein OS=Daucus carota OX=4039 GN=psbD PE=3 SV=1	[more]

BLAST of CmoCh10G011100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445D9F8	3.9e-91	98.17	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g025796 PE=3 SV=1	[more]
A0A445D2V8	3.3e-90	97.56	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g023269 PE=3 SV=1	[more]
K3Z2T5	1.6e-89	94.71	Photosystem II OS=Setaria italica OX=4555 PE=3 SV=1	[more]
A0A218KG45	3.7e-89	88.65	Photosystem II D2 protein OS=Cucumis sativus var. hardwickii OX=319220 GN=psbD P...	[more]
A0A1U9YE55	3.7e-89	88.65	Photosystem II D2 protein OS=Rehmannia glutinosa OX=99300 GN=psbD PE=3 SV=1	[more]

BLAST of CmoCh10G011100 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6540661.1	3.3e-92	99.39	hypothetical protein Mapa_017993 [Marchantia paleacea]	[more]
RYR59818.1	8.1e-91	98.17	hypothetical protein Ahy_A05g025796 isoform B [Arachis hypogaea]	[more]
RYR57567.1	6.8e-90	97.56	hypothetical protein Ahy_A05g023269 isoform A [Arachis hypogaea]	[more]
YP_001936512.1	7.6e-89	88.65	photosystem II protein D2 [Fagopyrum esculentum subsp. ancestrale] >YP_009142045...	[more]
AJE75080.1	7.6e-89	88.65	photosystem II protein D2 [Tragopogon dubius]	[more]

BLAST of CmoCh10G011100 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00270.1	3.0e-91	87.03	photosystem II reaction center protein D	[more]
ATCG00020.1	6.5e-14	26.82	photosystem II reaction center protein A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 11..150 e-value: 1.3E-33 score: 116.4
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 2..164
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 7..158 e-value: 1.1E-11 score: 46.7
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 2..165
None	No IPR available	PANTHER	PTHR33149:SF7	PHOTOSYSTEM II D2 PROTEIN	coord: 2..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G011100.1	CmoCh10G011100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0010242	oxygen evolving activity