CmoCh10G010560 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G010560
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionInactive protein RESTRICTED TEV MOVEMENT 2-like
LocationCmo_Chr10: 5611705 .. 5613355 (-)
RNA-Seq ExpressionCmoCh10G010560
SyntenyCmoCh10G010560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCGAATCAAGATCTCCATTCAATATAAAGATTACCGCGAAAACATCGAAAGAAATCGTCATCAAGAGAAGTTAGAGCGAAGAGAAATTAGAATTATCAGAGAGGAAAATCGAACGCAATGTCGATGGATCCTTCATCCAAAACCTTTCAGGATATTACGCCTCAAATCAAGTGCAAATATTATCCCGGGTTTCATGTTCTTACCGTCGCCGTCCAAGGTTTGACATTTTCCCCTTCTTTTGTGAAAATATTAATTCATAATTATATACATACATACATATATAATTAAAATTCACCATTTAATCTTAATATATTTTAAAAAATAACCTTCCAAATTGTTATATATTATTAAAAATAAATTAATATTATATGGTAAACAAATATATATTTTTAAATTTAAATTTATAATTTTCATTTATTTGAACTTAAATCTTCGATCAAATAGCTTAAAAATAAAATATAAATTAAATTAAATAGTTGAAAAAACAAACCATTTTTAATTTATGAAAATTTGAATTTACTGTTAGATGATGAAAGTTTCACATATGCCAATTTAGGGAATAATCATGGTTTTATAAACAAAGAATACTCTCCATTGGTACGAGGCATTTTGGAGAAGCCCAAAGCAAAACCACGGGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTTGTCTATCAGAGGCATGCCCTAAACTTAGTCGTGTTAATAGATTGGTAAATCCTCAAACATCGACTCCAAAAGAAAAAGGAGTCAAGCCTCCTCGAAGGCAAGAAAAAATGACTAAGATTTCAAAGGAGTCAAGTCTCGATTAAGAGGAGGTGCACTTTGTTATAGGGGAGGTGTTAGATGATGAAAGTTCCACATCTGCTAATTTAGGGAATAATCATGGTTTTTATAAACAAAGAATACTCTTCACTGTTACGAGGCCTTTTGGGGAAACCCAAAGGAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTTGTGTTCGTCTAACATAGTATCAGAGTCATGCCCTAAACTTAGTCGTGCCAATAGATTGATAAATCCTCCAACATCGAACAAAGGACTTAAAAAGAAAATGGAGTCAAGCCTAGTAGTCAAAAATAACTAAGACTCCAAAGGAATCGAGCCTCGATTAAGGGGAGGTGCACTTTGTTCGAGGGGAGGTGTTAGATGATGAAAGTCCCACATCTGCTAATTTAGGGAATGATCATGGATCTTTTCTCCAGATTTCACAAGCAACGATCTGAAAGTTCAGGTGACATGCACCTTAAAGTTGAGGATCAGCGGCGAACGAAGGGTCAACTGCGGCAAGTGTATCCGATTCCGCAAGGAAATCGATATTCCAGCCGACGTCGATATTTACAAGATCTCTGCCAAGTTGGAGGGAGGCATACTCTCAGTGAGGCAGCCCATGAAAGCCTCCGATTGTCCTATAAATGTCTTATCATGTCCTATAAATGATTGTCCAAAGACGTGATTTCTATAGACCTCTTCAACTATTACATCTCAGTGAGGCAGCCCAAGAAAGCCTCCGATTGTCCTATAAATGTCATTTGATTGTCTTATAAAAATATTTTAAATGATTGTCCTATAAATGATTGTCCAAA

mRNA sequence

TTTCGAATCAAGATCTCCATTCAATATAAAGATTACCGCGAAAACATCGAAAGAAATCGTCATCAAGAGAAGTTAGAGCGAAGAGAAATTAGAATTATCAGAGAGGAAAATCGAACGCAATGTCGATGGATCCTTCATCCAAAACCTTTCAGGATATTACGCCTCAAATCAAGTGCAAATATTATCCCGGGTTTCATGTTCTTACCGTCGCCGTCCAAGATTTCACAAGCAACGATCTGAAAGTTCAGGTGACATGCACCTTAAAGTTGAGGATCAGCGGCGAACGAAGGGTCAACTGCGGCAAGTGTATCCGATTCCGCAAGGAAATCGATATTCCAGCCGACGTCGATATTTACAAGATCTCTGCCAAGTTGGAGGGAGGCATACTCTCAGTGAGGCAGCCCATGAAAGCCTCCGATTGTCCTATAAATGTCTTATCATGTCCTATAAATGATTGTCCAAAGACGTGATTTCTATAGACCTCTTCAACTATTACATCTCAGTGAGGCAGCCCAAGAAAGCCTCCGATTGTCCTATAAATGTCATTTGATTGTCTTATAAAAATATTTTAAATGATTGTCCTATAAATGATTGTCCAAA

Coding sequence (CDS)

ATGTCGATGGATCCTTCATCCAAAACCTTTCAGGATATTACGCCTCAAATCAAGTGCAAATATTATCCCGGGTTTCATGTTCTTACCGTCGCCGTCCAAGATTTCACAAGCAACGATCTGAAAGTTCAGGTGACATGCACCTTAAAGTTGAGGATCAGCGGCGAACGAAGGGTCAACTGCGGCAAGTGTATCCGATTCCGCAAGGAAATCGATATTCCAGCCGACGTCGATATTTACAAGATCTCTGCCAAGTTGGAGGGAGGCATACTCTCAGTGAGGCAGCCCATGAAAGCCTCCGATTGTCCTATAAATGTCTTATCATGTCCTATAAATGATTGTCCAAAGACGTGA

Protein sequence

MSMDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASDCPINVLSCPINDCPKT
Homology
BLAST of CmoCh10G010560 vs. ExPASy Swiss-Prot
Match: A5JV83 (Heat shock protein beta-11 OS=Danio rerio OX=7955 GN=hspb11 PE=2 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-04
Identity = 28/82 (34.15%), Postives = 45/82 (54.88%), Query Frame = 0

Query: 26  HVLTVAVQDFTSNDLKVQVTCTLKLRISG--ERRVNCGK------CIRFRKEIDIPADVD 85
           + LT+  QDF+  +L V+     KLR+SG  E++ + GK      C  FR+E D+P DV+
Sbjct: 87  YALTLDTQDFSPEELAVK-QVGRKLRVSGKTEKKQDDGKGSYSYRCQEFRQEFDLPEDVN 146

Query: 86  IYKISAKLEGGILSVRQPMKAS 100
              +S  L  G L ++ P + +
Sbjct: 147 PESVSCSLNNGQLQIQAPREGN 167

BLAST of CmoCh10G010560 vs. ExPASy TrEMBL
Match: A0A6J1H8P0 (heat shock protein beta-11-like OS=Cucurbita moschata OX=3662 GN=LOC111461559 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.0e-61
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MSMDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNC 60
           MSMDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNC
Sbjct: 1   MSMDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNC 60

Query: 61  GKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASDCPINVLSCPINDCPKT 117
           GKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASDCPINVLSCPINDCPKT
Sbjct: 61  GKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASDCPINVLSCPINDCPKT 116

BLAST of CmoCh10G010560 vs. ExPASy TrEMBL
Match: A0A6J1HCF0 (uncharacterized protein LOC111461557 OS=Cucurbita moschata OX=3662 GN=LOC111461557 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25
Identity = 66/97 (68.04%), Postives = 73/97 (75.26%), Query Frame = 0

Query: 3   MDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGK 62
           MD SSK FQDI PQI  ++YP  HVLTV ++DFT NDLKVQVT T KLRI+GERR+  GK
Sbjct: 1   MDSSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGK 60

Query: 63  CIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS 100
            +RF KEI IPAD D  KISAKLE GIL V QP K S
Sbjct: 61  GLRFLKEIVIPADADSSKISAKLEKGILYVTQPRKTS 97

BLAST of CmoCh10G010560 vs. ExPASy TrEMBL
Match: A0A5D3CF67 (Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00810 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 61/105 (58.10%), Postives = 71/105 (67.62%), Query Frame = 0

Query: 3   MDPSS--KTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNC 62
           MDPSS  K FQ+  P+    ++P  HVL V +  F SN LKVQVT T KLRISGER++  
Sbjct: 1   MDPSSSAKNFQEFEPRYDWVHHPDSHVLVVRLSGFRSNQLKVQVTSTGKLRISGERKIGN 60

Query: 63  GKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASDCPINV 106
           GK +RF KEIDIPAD D  KISAKLE GIL V+QP K S    N+
Sbjct: 61  GKWLRFEKEIDIPADADTDKISAKLEEGILYVKQPKKLSATSSNI 105

BLAST of CmoCh10G010560 vs. ExPASy TrEMBL
Match: A0A5A7UKP9 (Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00920 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.7e-21
Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 0

Query: 3   MDPSS--KTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNC 62
           MDPSS  K FQ+  P+    ++P  HVL V +  F SN LKVQVT T KLR+SGER++  
Sbjct: 1   MDPSSSAKNFQEFEPRYDWVHHPDSHVLVVRLSGFRSNQLKVQVTSTGKLRVSGERKLGN 60

Query: 63  GKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASDCPINV 106
           GK +RF KEIDIPAD D  KISAKLE GIL V+QP K S    N+
Sbjct: 61  GKWLRFEKEIDIPADADTDKISAKLEEGILYVKQPKKLSATSSNI 105

BLAST of CmoCh10G010560 vs. ExPASy TrEMBL
Match: A0A1S3BQ02 (pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103492434 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.7e-21
Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 0

Query: 3   MDPSS--KTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNC 62
           MDPSS  K FQ+  P+    ++P  HVL V +  F SN LKVQVT T KLR+SGER++  
Sbjct: 1   MDPSSSAKNFQEFEPRYDWVHHPDSHVLVVRLSGFRSNQLKVQVTSTGKLRVSGERKLGN 60

Query: 63  GKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASDCPINV 106
           GK +RF KEIDIPAD D  KISAKLE GIL V+QP K S    N+
Sbjct: 61  GKWLRFEKEIDIPADADTDKISAKLEEGILYVKQPKKLSATSSNI 105

BLAST of CmoCh10G010560 vs. TAIR 10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 4.9e-15
Identity = 42/108 (38.89%), Postives = 57/108 (52.78%), Query Frame = 0

Query: 6   SSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIR 65
           +++ + +  P    K   GF  LT+ +  F    LKVQVT T KLR+ G+R     K IR
Sbjct: 10  ANRIYDEFEPLSNWKTEQGFEALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAGANKWIR 69

Query: 66  FRKEIDIPADVDIYKISAKLEGGILSVR----QPMKASDCPINVLSCP 110
           FRKE  IP ++D+  +SAK EG  L VR    +PM     PI   + P
Sbjct: 70  FRKEFPIPPNIDVDSVSAKFEGANLVVRLPRTEPMGKQPSPIGTATKP 117

BLAST of CmoCh10G010560 vs. TAIR 10
Match: AT5G20970.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-11
Identity = 34/95 (35.79%), Postives = 48/95 (50.53%), Query Frame = 0

Query: 8   KTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFR 67
           + +Q+  P  +    P   VL   +  F    LKV VT T KLR++GER     K IRF 
Sbjct: 8   RVYQEFEPATRWTSEPDAEVLVADLPGFKKEQLKVSVTATRKLRLTGERPTGGNKWIRFH 67

Query: 68  KEIDIPADVDIYKISAKLEGGILSVRQPMKASDCP 103
           +EI +P  VDI  +SA  +   L +R P   ++ P
Sbjct: 68  QEIPVPLTVDIDSVSAMFKDNKLYIRHPKLKTEIP 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A5JV832.9e-0434.15Heat shock protein beta-11 OS=Danio rerio OX=7955 GN=hspb11 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A6J1H8P06.0e-61100.00heat shock protein beta-11-like OS=Cucurbita moschata OX=3662 GN=LOC111461559 PE... [more]
A0A6J1HCF01.4e-2568.04uncharacterized protein LOC111461557 OS=Cucurbita moschata OX=3662 GN=LOC1114615... [more]
A0A5D3CF671.2e-2158.10Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7UKP92.7e-2157.14Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1... [more]
A0A1S3BQ022.7e-2157.14pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3... [more]
Match NameE-valueIdentityDescription
AT2G27140.14.9e-1538.89HSP20-like chaperones superfamily protein [more]
AT5G20970.13.3e-1135.79HSP20-like chaperones superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002068Alpha crystallin/Hsp20 domainPFAMPF00011HSP20coord: 26..99
e-value: 1.7E-6
score: 28.1
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031SHSPcoord: 8..111
score: 13.416836
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 1..105
e-value: 1.3E-12
score: 49.6
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 10..98
IPR045045Small heat shock protein RTM2-likePANTHERPTHR43670HEAT SHOCK PROTEIN 26coord: 6..97
NoneNo IPR availablePANTHERPTHR43670:SF73OS03G0656000 PROTEINcoord: 6..97
NoneNo IPR availableCDDcd00298ACD_sHsps_p23-likecoord: 27..93
e-value: 5.12386E-12
score: 54.9027

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G010560.1CmoCh10G010560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane