CmoCh10G010560 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTCGAATCAAGATCTCCATTCAATATAAAGATTACCGCGAAAACATCGAAAGAAATCGTCATCAAGAGAAGTTAGAGCGAAGAGAAATTAGAATTATCAGAGAGGAAAATCGAACGCAATGTCGATGGATCCTTCATCCAAAACCTTTCAGGATATTACGCCTCAAATCAAGTGCAAATATTATCCCGGGTTTCATGTTCTTACCGTCGCCGTCCAAGGTTTGACATTTTCCCCTTCTTTTGTGAAAATATTAATTCATAATTATATACATACATACATATATAATTAAAATTCACCATTTAATCTTAATATATTTTAAAAAATAACCTTCCAAATTGTTATATATTATTAAAAATAAATTAATATTATATGGTAAACAAATATATATTTTTAAATTTAAATTTATAATTTTCATTTATTTGAACTTAAATCTTCGATCAAATAGCTTAAAAATAAAATATAAATTAAATTAAATAGTTGAAAAAACAAACCATTTTTAATTTATGAAAATTTGAATTTACTGTTAGATGATGAAAGTTTCACATATGCCAATTTAGGGAATAATCATGGTTTTATAAACAAAGAATACTCTCCATTGGTACGAGGCATTTTGGAGAAGCCCAAAGCAAAACCACGGGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTTGTCTATCAGAGGCATGCCCTAAACTTAGTCGTGTTAATAGATTGGTAAATCCTCAAACATCGACTCCAAAAGAAAAAGGAGTCAAGCCTCCTCGAAGGCAAGAAAAAATGACTAAGATTTCAAAGGAGTCAAGTCTCGATTAAGAGGAGGTGCACTTTGTTATAGGGGAGGTGTTAGATGATGAAAGTTCCACATCTGCTAATTTAGGGAATAATCATGGTTTTTATAAACAAAGAATACTCTTCACTGTTACGAGGCCTTTTGGGGAAACCCAAAGGAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTTGTGTTCGTCTAACATAGTATCAGAGTCATGCCCTAAACTTAGTCGTGCCAATAGATTGATAAATCCTCCAACATCGAACAAAGGACTTAAAAAGAAAATGGAGTCAAGCCTAGTAGTCAAAAATAACTAAGACTCCAAAGGAATCGAGCCTCGATTAAGGGGAGGTGCACTTTGTTCGAGGGGAGGTGTTAGATGATGAAAGTCCCACATCTGCTAATTTAGGGAATGATCATGGATCTTTTCTCCAGATTTCACAAGCAACGATCTGAAAGTTCAGGTGACATGCACCTTAAAGTTGAGGATCAGCGGCGAACGAAGGGTCAACTGCGGCAAGTGTATCCGATTCCGCAAGGAAATCGATATTCCAGCCGACGTCGATATTTACAAGATCTCTGCCAAGTTGGAGGGAGGCATACTCTCAGTGAGGCAGCCCATGAAAGCCTCCGATTGTCCTATAAATGTCTTATCATGTCCTATAAATGATTGTCCAAAGACGTGATTTCTATAGACCTCTTCAACTATTACATCTCAGTGAGGCAGCCCAAGAAAGCCTCCGATTGTCCTATAAATGTCATTTGATTGTCTTATAAAAATATTTTAAATGATTGTCCTATAAATGATTGTCCAAA TTTCGAATCAAGATCTCCATTCAATATAAAGATTACCGCGAAAACATCGAAAGAAATCGTCATCAAGAGAAGTTAGAGCGAAGAGAAATTAGAATTATCAGAGAGGAAAATCGAACGCAATGTCGATGGATCCTTCATCCAAAACCTTTCAGGATATTACGCCTCAAATCAAGTGCAAATATTATCCCGGGTTTCATGTTCTTACCGTCGCCGTCCAAGATTTCACAAGCAACGATCTGAAAGTTCAGGTGACATGCACCTTAAAGTTGAGGATCAGCGGCGAACGAAGGGTCAACTGCGGCAAGTGTATCCGATTCCGCAAGGAAATCGATATTCCAGCCGACGTCGATATTTACAAGATCTCTGCCAAGTTGGAGGGAGGCATACTCTCAGTGAGGCAGCCCATGAAAGCCTCCGATTGTCCTATAAATGTCTTATCATGTCCTATAAATGATTGTCCAAAGACGTGATTTCTATAGACCTCTTCAACTATTACATCTCAGTGAGGCAGCCCAAGAAAGCCTCCGATTGTCCTATAAATGTCATTTGATTGTCTTATAAAAATATTTTAAATGATTGTCCTATAAATGATTGTCCAAA ATGTCGATGGATCCTTCATCCAAAACCTTTCAGGATATTACGCCTCAAATCAAGTGCAAATATTATCCCGGGTTTCATGTTCTTACCGTCGCCGTCCAAGATTTCACAAGCAACGATCTGAAAGTTCAGGTGACATGCACCTTAAAGTTGAGGATCAGCGGCGAACGAAGGGTCAACTGCGGCAAGTGTATCCGATTCCGCAAGGAAATCGATATTCCAGCCGACGTCGATATTTACAAGATCTCTGCCAAGTTGGAGGGAGGCATACTCTCAGTGAGGCAGCCCATGAAAGCCTCCGATTGTCCTATAAATGTCTTATCATGTCCTATAAATGATTGTCCAAAGACGTGA MSMDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASDCPINVLSCPINDCPKT Homology
BLAST of CmoCh10G010560 vs. ExPASy Swiss-Prot
Match: A5JV83 (Heat shock protein beta-11 OS=Danio rerio OX=7955 GN=hspb11 PE=2 SV=2) HSP 1 Score: 46.2 bits (108), Expect = 2.9e-04 Identity = 28/82 (34.15%), Postives = 45/82 (54.88%), Query Frame = 0
BLAST of CmoCh10G010560 vs. ExPASy TrEMBL
Match: A0A6J1H8P0 (heat shock protein beta-11-like OS=Cucurbita moschata OX=3662 GN=LOC111461559 PE=3 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 6.0e-61 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of CmoCh10G010560 vs. ExPASy TrEMBL
Match: A0A6J1HCF0 (uncharacterized protein LOC111461557 OS=Cucurbita moschata OX=3662 GN=LOC111461557 PE=3 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25 Identity = 66/97 (68.04%), Postives = 73/97 (75.26%), Query Frame = 0
BLAST of CmoCh10G010560 vs. ExPASy TrEMBL
Match: A0A5D3CF67 (Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00810 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21 Identity = 61/105 (58.10%), Postives = 71/105 (67.62%), Query Frame = 0
BLAST of CmoCh10G010560 vs. ExPASy TrEMBL
Match: A0A5A7UKP9 (Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00920 PE=3 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 2.7e-21 Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 0
BLAST of CmoCh10G010560 vs. ExPASy TrEMBL
Match: A0A1S3BQ02 (pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103492434 PE=3 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 2.7e-21 Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 0
BLAST of CmoCh10G010560 vs. TAIR 10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein ) HSP 1 Score: 78.2 bits (191), Expect = 4.9e-15 Identity = 42/108 (38.89%), Postives = 57/108 (52.78%), Query Frame = 0
BLAST of CmoCh10G010560 vs. TAIR 10
Match: AT5G20970.1 (HSP20-like chaperones superfamily protein ) HSP 1 Score: 65.5 bits (158), Expect = 3.3e-11 Identity = 34/95 (35.79%), Postives = 48/95 (50.53%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|