CmoCh10G009340 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G009340
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein isoform 1
LocationCmo_Chr10: 4668594 .. 4669217 (-)
RNA-Seq ExpressionCmoCh10G009340
SyntenyCmoCh10G009340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAATGCAATGTCTCCATGTCTTATACCCCCTTCCATTACCAACCGCCACCGCTCCTCCGCCGTGAAGCTCATATTCTCCAGCGGGCCCACCAGAATCCTCGCCGGAAGCCACCACTTCGCCGGAGAGATAATGTTCCAATTTCCCGACATGATAGTCTGCCACGCTGACTCCTTCTTCATCGGCCACCGAATTCCATCCTTAGCCATTGAAGACAAGCTTCTCGCCGGCGAAACCTACTTGGTTCTCCCCATCGACCGATTCTCCTTGAACGACGTTCTCTCAACGTCGTCGCTCGCTGCCATCGGCGCCGGGAATGAGGCGGCGGAGAAATTCTCGAGTTCGTGTCCGTTTGAGTACGTCCGAGGGCGGAATGGGAAAGCGCTGATTAAGGTCATGCCGGAGTTTATTGTTCGGTTGGTCTCTCCCGGCGGCGCGTACGGCGGAGAGGGTGGTGGGTTTTTGTGTAGCACGCCGGAGTTGAAGAAGCATTACGATCAACTCGTCGGAACATCGAAGGGGCAGGTTTGGTCGCCGTCGTTGGAGACTATTTCGGAGTATAAAATTAGGTATTCGCCCTGTAGATTTGTTGGGTTTAAAGTCAAACAAAAGGAAGGCTAA

mRNA sequence

ATGGGGAATGCAATGTCTCCATGTCTTATACCCCCTTCCATTACCAACCGCCACCGCTCCTCCGCCGTGAAGCTCATATTCTCCAGCGGGCCCACCAGAATCCTCGCCGGAAGCCACCACTTCGCCGGAGAGATAATGTTCCAATTTCCCGACATGATAGTCTGCCACGCTGACTCCTTCTTCATCGGCCACCGAATTCCATCCTTAGCCATTGAAGACAAGCTTCTCGCCGGCGAAACCTACTTGGTTCTCCCCATCGACCGATTCTCCTTGAACGACGTTCTCTCAACGTCGTCGCTCGCTGCCATCGGCGCCGGGAATGAGGCGGCGGAGAAATTCTCGAGTTCGTGTCCGTTTGAGTACGTCCGAGGGCGGAATGGGAAAGCGCTGATTAAGGTCATGCCGGAGTTTATTGTTCGGTTGGTCTCTCCCGGCGGCGCGTACGGCGGAGAGGGTGGTGGGTTTTTGTGTAGCACGCCGGAGTTGAAGAAGCATTACGATCAACTCGTCGGAACATCGAAGGGGCAGGTTTGGTCGCCGTCGTTGGAGACTATTTCGGAGTATAAAATTAGGTATTCGCCCTGTAGATTTGTTGGGTTTAAAGTCAAACAAAAGGAAGGCTAA

Coding sequence (CDS)

ATGGGGAATGCAATGTCTCCATGTCTTATACCCCCTTCCATTACCAACCGCCACCGCTCCTCCGCCGTGAAGCTCATATTCTCCAGCGGGCCCACCAGAATCCTCGCCGGAAGCCACCACTTCGCCGGAGAGATAATGTTCCAATTTCCCGACATGATAGTCTGCCACGCTGACTCCTTCTTCATCGGCCACCGAATTCCATCCTTAGCCATTGAAGACAAGCTTCTCGCCGGCGAAACCTACTTGGTTCTCCCCATCGACCGATTCTCCTTGAACGACGTTCTCTCAACGTCGTCGCTCGCTGCCATCGGCGCCGGGAATGAGGCGGCGGAGAAATTCTCGAGTTCGTGTCCGTTTGAGTACGTCCGAGGGCGGAATGGGAAAGCGCTGATTAAGGTCATGCCGGAGTTTATTGTTCGGTTGGTCTCTCCCGGCGGCGCGTACGGCGGAGAGGGTGGTGGGTTTTTGTGTAGCACGCCGGAGTTGAAGAAGCATTACGATCAACTCGTCGGAACATCGAAGGGGCAGGTTTGGTCGCCGTCGTTGGAGACTATTTCGGAGTATAAAATTAGGTATTCGCCCTGTAGATTTGTTGGGTTTAAAGTCAAACAAAAGGAAGGCTAA

Protein sequence

MGNAMSPCLIPPSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSFFIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPFEYVRGRNGKALIKVMPEFIVRLVSPGGAYGGEGGGFLCSTPELKKHYDQLVGTSKGQVWSPSLETISEYKIRYSPCRFVGFKVKQKEG
Homology
BLAST of CmoCh10G009340 vs. ExPASy TrEMBL
Match: A0A6J1HB88 (uncharacterized protein LOC111461744 OS=Cucurbita moschata OX=3662 GN=LOC111461744 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 3.4e-115
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0

Query: 1   MGNAMSPCLIPPSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSF 60
           MGNAMSPCLIPPSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSF
Sbjct: 1   MGNAMSPCLIPPSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSF 60

Query: 61  FIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPFE 120
           FIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPFE
Sbjct: 61  FIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPFE 120

Query: 121 YVRGRNGKALIKVMPEFIVRLVSPGGAYGGEGGGFLCSTPELKKHYDQLVGTSKGQVWSP 180
           YVRGRNGKALIKVMPEFIVRLVSPGGAYGGEGGGFLCSTPELKKHYDQLVGTSKGQVWSP
Sbjct: 121 YVRGRNGKALIKVMPEFIVRLVSPGGAYGGEGGGFLCSTPELKKHYDQLVGTSKGQVWSP 180

Query: 181 SLETISEYKIRYSPCRFVGFKVKQKEG 208
           SLETISEYKIRYSPCRFVGFKVKQKEG
Sbjct: 181 SLETISEYKIRYSPCRFVGFKVKQKEG 207

BLAST of CmoCh10G009340 vs. ExPASy TrEMBL
Match: A0A6J1JKY3 (uncharacterized protein LOC111485518 OS=Cucurbita maxima OX=3661 GN=LOC111485518 PE=4 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.4e-113
Identity = 203/207 (98.07%), Postives = 206/207 (99.52%), Query Frame = 0

Query: 1   MGNAMSPCLIPPSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSF 60
           MGNA+SPC+IPPSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSF
Sbjct: 1   MGNAISPCIIPPSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSF 60

Query: 61  FIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPFE 120
           FIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPF+
Sbjct: 61  FIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPFQ 120

Query: 121 YVRGRNGKALIKVMPEFIVRLVSPGGAYGGEGGGFLCSTPELKKHYDQLVGTSKGQVWSP 180
           YVRGRNGKALIKVMPEFIVRLVSPGGAYGGEGGGFLCSTPELKKHYDQLVGT KGQVWSP
Sbjct: 121 YVRGRNGKALIKVMPEFIVRLVSPGGAYGGEGGGFLCSTPELKKHYDQLVGTPKGQVWSP 180

Query: 181 SLETISEYKIRYSPCRFVGFKVKQKEG 208
           SLETISEYKIRYSPCRFVGFKVKQKEG
Sbjct: 181 SLETISEYKIRYSPCRFVGFKVKQKEG 207

BLAST of CmoCh10G009340 vs. ExPASy TrEMBL
Match: A0A5A7UN34 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00360 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.0e-91
Identity = 168/212 (79.25%), Postives = 186/212 (87.74%), Query Frame = 0

Query: 1   MGNAMSPCLIPPSIT-NRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADS 60
           MGNA+SPCLI  SI+  RHR SAVKL+F+ GPT+ L G+HHFAGEIMFQFPDM+VCHA+S
Sbjct: 1   MGNAVSPCLISISISLRRHRPSAVKLVFTDGPTKFLVGNHHFAGEIMFQFPDMMVCHAES 60

Query: 61  FFIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPF 120
           FFIGH IPSL+I+D+LL GETYLVLPIDRF+  DVLSTSSLA IGAGN +AEKFS  CPF
Sbjct: 61  FFIGHPIPSLSIDDELLVGETYLVLPIDRFASVDVLSTSSLAMIGAGNMSAEKFSGPCPF 120

Query: 121 EYVRGRNGKALIKVMPEFIVRLVSP----GGAYGGEGGGFLCSTPELKKHYDQLVGTSKG 180
           EYVRG NG+ LIKVMPEFIVRL+SP    GG  GG GGGFLCSTPELKKHYDQLVG++KG
Sbjct: 121 EYVRGTNGRVLIKVMPEFIVRLISPAAMDGGESGGGGGGFLCSTPELKKHYDQLVGSTKG 180

Query: 181 QVWSPSLETISEYKIRYSPCRFVGFKVKQKEG 208
           QVWSP LETISEYKIRYSPCRFVGFK+KQKEG
Sbjct: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212

BLAST of CmoCh10G009340 vs. ExPASy TrEMBL
Match: A0A1S3BP11 (uncharacterized protein LOC103491983 OS=Cucumis melo OX=3656 GN=LOC103491983 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.0e-91
Identity = 168/212 (79.25%), Postives = 186/212 (87.74%), Query Frame = 0

Query: 1   MGNAMSPCLIPPSIT-NRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADS 60
           MGNA+SPCLI  SI+  RHR SAVKL+F+ GPT+ L G+HHFAGEIMFQFPDM+VCHA+S
Sbjct: 1   MGNAVSPCLISISISLRRHRPSAVKLVFTDGPTKFLVGNHHFAGEIMFQFPDMMVCHAES 60

Query: 61  FFIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPF 120
           FFIGH IPSL+I+D+LL GETYLVLPIDRF+  DVLSTSSLA IGAGN +AEKFS  CPF
Sbjct: 61  FFIGHPIPSLSIDDELLVGETYLVLPIDRFASVDVLSTSSLAMIGAGNMSAEKFSGPCPF 120

Query: 121 EYVRGRNGKALIKVMPEFIVRLVSP----GGAYGGEGGGFLCSTPELKKHYDQLVGTSKG 180
           EYVRG NG+ LIKVMPEFIVRL+SP    GG  GG GGGFLCSTPELKKHYDQLVG++KG
Sbjct: 121 EYVRGTNGRVLIKVMPEFIVRLISPAAVDGGESGGGGGGFLCSTPELKKHYDQLVGSTKG 180

Query: 181 QVWSPSLETISEYKIRYSPCRFVGFKVKQKEG 208
           QVWSP LETISEYKIRYSPCRFVGFK+KQKEG
Sbjct: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212

BLAST of CmoCh10G009340 vs. ExPASy TrEMBL
Match: A0A0A0LZV5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G627480 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 9.3e-89
Identity = 163/212 (76.89%), Postives = 183/212 (86.32%), Query Frame = 0

Query: 1   MGNAMSPCLIPPSITNRH-RSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADS 60
           MGNA+SPCL+  SI+  H R S VKL+F++GPT+ LAG HHFAGEIMFQFPDM+VCHA+S
Sbjct: 1   MGNAVSPCLLSISISRCHRRPSTVKLVFTNGPTKFLAGDHHFAGEIMFQFPDMMVCHAES 60

Query: 61  FFIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPF 120
           FFIGH IPSL+I+D+L+AGETYL+LPIDRF+  DVLSTSSLA IGAGN + EKFS  CPF
Sbjct: 61  FFIGHPIPSLSIDDQLIAGETYLILPIDRFASVDVLSTSSLATIGAGNMSVEKFSGPCPF 120

Query: 121 EYVRGRNGKALIKVMPEFIVRLVSPGGAYGGE----GGGFLCSTPELKKHYDQLVGTSKG 180
           EYVRG NGK LIKVMPEFIVRL+S     GGE    GGGFLCSTPELKKHYDQLVG++KG
Sbjct: 121 EYVRGTNGKVLIKVMPEFIVRLISQAAMDGGESEGGGGGFLCSTPELKKHYDQLVGSTKG 180

Query: 181 QVWSPSLETISEYKIRYSPCRFVGFKVKQKEG 208
           QVWSP LETISEYKIRYSPCRFVGFK+KQKEG
Sbjct: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212

BLAST of CmoCh10G009340 vs. TAIR 10
Match: AT5G12340.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-43
Identity = 102/223 (45.74%), Postives = 131/223 (58.74%), Query Frame = 0

Query: 1   MGNAMSPCLIPPSITNRHRSSAVKLIFSSGPTRILAG-SHHFAGEIMFQFPDMIVCHADS 60
           MG ++     P  I  R +     + F    T+ L G   H AGEIMF+FPD IVCHADS
Sbjct: 1   MGRSLINSCFP--IIRRRQGIVTLVFFEHVSTKTLCGFKKHVAGEIMFEFPDQIVCHADS 60

Query: 61  FFIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKF------ 120
           F+IG +IP+LA++D L+ G+TY VLPI+RF    +L+TS L+   +  E           
Sbjct: 61  FYIGRQIPALAMDDYLIPGQTYFVLPIERFQYK-ILTTSCLSIFNSNLENVRSNTPPLNF 120

Query: 121 ---SSSCPFEYVRGRNGKALIKVMPEFIVRLVSPG-------GAYGGEGGGFLCSTPELK 180
              SS  PFEY +G NGK LIKV PEFI+ L+              GE    +C++PELK
Sbjct: 121 TAPSSPPPFEYSQGPNGKILIKVSPEFIISLICKNRNIREEEATSCGENSA-ICNSPELK 180

Query: 181 KHYDQLVGTSKGQVWSPSLETISEYKIRYSPCRFVGFKVKQKE 207
           K YDQLVGT +  +WSP+L+TISE+KIR SP RF G   KQ E
Sbjct: 181 KQYDQLVGT-REHMWSPNLQTISEHKIRVSPLRFFGLNRKQDE 218

BLAST of CmoCh10G009340 vs. TAIR 10
Match: AT1G28190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12340.1); Has 166 Blast hits to 162 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 5; Plants - 124; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). )

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 65/198 (32.83%), Postives = 93/198 (46.97%), Query Frame = 0

Query: 8   CLIP-PSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSFFIGHRI 67
           CL P P  T+      +KL+ S G  ++         E+   FP   +C +D  +IG + 
Sbjct: 25  CLHPRPDRTS--NGGRIKLVRSDGSLQVY-DRPVVVSELTKDFPKHKICRSDLLYIGQKT 84

Query: 68  PSLAIEDKLLAGETYLVLPIDRFSLNDV--LSTSSLAAIGAGNEAAEKFSSS-CPFEYVR 127
           P L+  + L  G  Y +LP D F  ND+  L+ ++L     G    +K      PF   +
Sbjct: 85  PVLSETETLKLGLNYFLLPSDFFK-NDLSFLTIATLKTPQNGGVLVKKTQQQPQPFLIQK 144

Query: 128 GRNGKAL-IKVMPEFIVRLVSPGGAY-----------GGEGGGFLCSTPELKKHYDQLVG 187
           G  G+ L I+V  EF+  L+  G              GGEG G +C+T +LKK Y QLVG
Sbjct: 145 GEKGERLRIRVSEEFVSELMMEGKKNRVNEEEEEEEGGGEGEGRVCTTVKLKKDYVQLVG 204

Query: 188 TSKGQVWSPSLETISEYK 190
             +   W P LETI+E K
Sbjct: 205 LRR---WKPKLETITETK 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HB883.4e-115100.00uncharacterized protein LOC111461744 OS=Cucurbita moschata OX=3662 GN=LOC1114617... [more]
A0A6J1JKY31.4e-11398.07uncharacterized protein LOC111485518 OS=Cucurbita maxima OX=3661 GN=LOC111485518... [more]
A0A5A7UN342.0e-9179.25DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A1S3BP112.0e-9179.25uncharacterized protein LOC103491983 OS=Cucumis melo OX=3656 GN=LOC103491983 PE=... [more]
A0A0A0LZV59.3e-8976.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G627480 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G12340.11.5e-4345.74unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G28190.11.1e-1432.83unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025322Protein of unknown function DUF4228, plantPFAMPF14009DUF4228coord: 1..187
e-value: 7.7E-29
score: 101.4
NoneNo IPR availablePANTHERPTHR33052DUF4228 DOMAIN PROTEIN-RELATEDcoord: 1..193
NoneNo IPR availablePANTHERPTHR33052:SF4DUF4228 DOMAIN PROTEINcoord: 1..193

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G009340.1CmoCh10G009340.1mRNA