Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAATGCAATGTCTCCATGTCTTATACCCCCTTCCATTACCAACCGCCACCGCTCCTCCGCCGTGAAGCTCATATTCTCCAGCGGGCCCACCAGAATCCTCGCCGGAAGCCACCACTTCGCCGGAGAGATAATGTTCCAATTTCCCGACATGATAGTCTGCCACGCTGACTCCTTCTTCATCGGCCACCGAATTCCATCCTTAGCCATTGAAGACAAGCTTCTCGCCGGCGAAACCTACTTGGTTCTCCCCATCGACCGATTCTCCTTGAACGACGTTCTCTCAACGTCGTCGCTCGCTGCCATCGGCGCCGGGAATGAGGCGGCGGAGAAATTCTCGAGTTCGTGTCCGTTTGAGTACGTCCGAGGGCGGAATGGGAAAGCGCTGATTAAGGTCATGCCGGAGTTTATTGTTCGGTTGGTCTCTCCCGGCGGCGCGTACGGCGGAGAGGGTGGTGGGTTTTTGTGTAGCACGCCGGAGTTGAAGAAGCATTACGATCAACTCGTCGGAACATCGAAGGGGCAGGTTTGGTCGCCGTCGTTGGAGACTATTTCGGAGTATAAAATTAGGTATTCGCCCTGTAGATTTGTTGGGTTTAAAGTCAAACAAAAGGAAGGCTAA
mRNA sequence
ATGGGGAATGCAATGTCTCCATGTCTTATACCCCCTTCCATTACCAACCGCCACCGCTCCTCCGCCGTGAAGCTCATATTCTCCAGCGGGCCCACCAGAATCCTCGCCGGAAGCCACCACTTCGCCGGAGAGATAATGTTCCAATTTCCCGACATGATAGTCTGCCACGCTGACTCCTTCTTCATCGGCCACCGAATTCCATCCTTAGCCATTGAAGACAAGCTTCTCGCCGGCGAAACCTACTTGGTTCTCCCCATCGACCGATTCTCCTTGAACGACGTTCTCTCAACGTCGTCGCTCGCTGCCATCGGCGCCGGGAATGAGGCGGCGGAGAAATTCTCGAGTTCGTGTCCGTTTGAGTACGTCCGAGGGCGGAATGGGAAAGCGCTGATTAAGGTCATGCCGGAGTTTATTGTTCGGTTGGTCTCTCCCGGCGGCGCGTACGGCGGAGAGGGTGGTGGGTTTTTGTGTAGCACGCCGGAGTTGAAGAAGCATTACGATCAACTCGTCGGAACATCGAAGGGGCAGGTTTGGTCGCCGTCGTTGGAGACTATTTCGGAGTATAAAATTAGGTATTCGCCCTGTAGATTTGTTGGGTTTAAAGTCAAACAAAAGGAAGGCTAA
Coding sequence (CDS)
ATGGGGAATGCAATGTCTCCATGTCTTATACCCCCTTCCATTACCAACCGCCACCGCTCCTCCGCCGTGAAGCTCATATTCTCCAGCGGGCCCACCAGAATCCTCGCCGGAAGCCACCACTTCGCCGGAGAGATAATGTTCCAATTTCCCGACATGATAGTCTGCCACGCTGACTCCTTCTTCATCGGCCACCGAATTCCATCCTTAGCCATTGAAGACAAGCTTCTCGCCGGCGAAACCTACTTGGTTCTCCCCATCGACCGATTCTCCTTGAACGACGTTCTCTCAACGTCGTCGCTCGCTGCCATCGGCGCCGGGAATGAGGCGGCGGAGAAATTCTCGAGTTCGTGTCCGTTTGAGTACGTCCGAGGGCGGAATGGGAAAGCGCTGATTAAGGTCATGCCGGAGTTTATTGTTCGGTTGGTCTCTCCCGGCGGCGCGTACGGCGGAGAGGGTGGTGGGTTTTTGTGTAGCACGCCGGAGTTGAAGAAGCATTACGATCAACTCGTCGGAACATCGAAGGGGCAGGTTTGGTCGCCGTCGTTGGAGACTATTTCGGAGTATAAAATTAGGTATTCGCCCTGTAGATTTGTTGGGTTTAAAGTCAAACAAAAGGAAGGCTAA
Protein sequence
MGNAMSPCLIPPSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSFFIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPFEYVRGRNGKALIKVMPEFIVRLVSPGGAYGGEGGGFLCSTPELKKHYDQLVGTSKGQVWSPSLETISEYKIRYSPCRFVGFKVKQKEG
Homology
BLAST of CmoCh10G009340 vs. ExPASy TrEMBL
Match:
A0A6J1HB88 (uncharacterized protein LOC111461744 OS=Cucurbita moschata OX=3662 GN=LOC111461744 PE=4 SV=1)
HSP 1 Score: 424.1 bits (1089), Expect = 3.4e-115
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query: 1 MGNAMSPCLIPPSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSF 60
MGNAMSPCLIPPSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSF
Sbjct: 1 MGNAMSPCLIPPSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSF 60
Query: 61 FIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPFE 120
FIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPFE
Sbjct: 61 FIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPFE 120
Query: 121 YVRGRNGKALIKVMPEFIVRLVSPGGAYGGEGGGFLCSTPELKKHYDQLVGTSKGQVWSP 180
YVRGRNGKALIKVMPEFIVRLVSPGGAYGGEGGGFLCSTPELKKHYDQLVGTSKGQVWSP
Sbjct: 121 YVRGRNGKALIKVMPEFIVRLVSPGGAYGGEGGGFLCSTPELKKHYDQLVGTSKGQVWSP 180
Query: 181 SLETISEYKIRYSPCRFVGFKVKQKEG 208
SLETISEYKIRYSPCRFVGFKVKQKEG
Sbjct: 181 SLETISEYKIRYSPCRFVGFKVKQKEG 207
BLAST of CmoCh10G009340 vs. ExPASy TrEMBL
Match:
A0A6J1JKY3 (uncharacterized protein LOC111485518 OS=Cucurbita maxima OX=3661 GN=LOC111485518 PE=4 SV=1)
HSP 1 Score: 418.7 bits (1075), Expect = 1.4e-113
Identity = 203/207 (98.07%), Postives = 206/207 (99.52%), Query Frame = 0
Query: 1 MGNAMSPCLIPPSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSF 60
MGNA+SPC+IPPSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSF
Sbjct: 1 MGNAISPCIIPPSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSF 60
Query: 61 FIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPFE 120
FIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPF+
Sbjct: 61 FIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPFQ 120
Query: 121 YVRGRNGKALIKVMPEFIVRLVSPGGAYGGEGGGFLCSTPELKKHYDQLVGTSKGQVWSP 180
YVRGRNGKALIKVMPEFIVRLVSPGGAYGGEGGGFLCSTPELKKHYDQLVGT KGQVWSP
Sbjct: 121 YVRGRNGKALIKVMPEFIVRLVSPGGAYGGEGGGFLCSTPELKKHYDQLVGTPKGQVWSP 180
Query: 181 SLETISEYKIRYSPCRFVGFKVKQKEG 208
SLETISEYKIRYSPCRFVGFKVKQKEG
Sbjct: 181 SLETISEYKIRYSPCRFVGFKVKQKEG 207
BLAST of CmoCh10G009340 vs. ExPASy TrEMBL
Match:
A0A5A7UN34 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00360 PE=4 SV=1)
HSP 1 Score: 345.1 bits (884), Expect = 2.0e-91
Identity = 168/212 (79.25%), Postives = 186/212 (87.74%), Query Frame = 0
Query: 1 MGNAMSPCLIPPSIT-NRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADS 60
MGNA+SPCLI SI+ RHR SAVKL+F+ GPT+ L G+HHFAGEIMFQFPDM+VCHA+S
Sbjct: 1 MGNAVSPCLISISISLRRHRPSAVKLVFTDGPTKFLVGNHHFAGEIMFQFPDMMVCHAES 60
Query: 61 FFIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPF 120
FFIGH IPSL+I+D+LL GETYLVLPIDRF+ DVLSTSSLA IGAGN +AEKFS CPF
Sbjct: 61 FFIGHPIPSLSIDDELLVGETYLVLPIDRFASVDVLSTSSLAMIGAGNMSAEKFSGPCPF 120
Query: 121 EYVRGRNGKALIKVMPEFIVRLVSP----GGAYGGEGGGFLCSTPELKKHYDQLVGTSKG 180
EYVRG NG+ LIKVMPEFIVRL+SP GG GG GGGFLCSTPELKKHYDQLVG++KG
Sbjct: 121 EYVRGTNGRVLIKVMPEFIVRLISPAAMDGGESGGGGGGFLCSTPELKKHYDQLVGSTKG 180
Query: 181 QVWSPSLETISEYKIRYSPCRFVGFKVKQKEG 208
QVWSP LETISEYKIRYSPCRFVGFK+KQKEG
Sbjct: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212
BLAST of CmoCh10G009340 vs. ExPASy TrEMBL
Match:
A0A1S3BP11 (uncharacterized protein LOC103491983 OS=Cucumis melo OX=3656 GN=LOC103491983 PE=4 SV=1)
HSP 1 Score: 345.1 bits (884), Expect = 2.0e-91
Identity = 168/212 (79.25%), Postives = 186/212 (87.74%), Query Frame = 0
Query: 1 MGNAMSPCLIPPSIT-NRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADS 60
MGNA+SPCLI SI+ RHR SAVKL+F+ GPT+ L G+HHFAGEIMFQFPDM+VCHA+S
Sbjct: 1 MGNAVSPCLISISISLRRHRPSAVKLVFTDGPTKFLVGNHHFAGEIMFQFPDMMVCHAES 60
Query: 61 FFIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPF 120
FFIGH IPSL+I+D+LL GETYLVLPIDRF+ DVLSTSSLA IGAGN +AEKFS CPF
Sbjct: 61 FFIGHPIPSLSIDDELLVGETYLVLPIDRFASVDVLSTSSLAMIGAGNMSAEKFSGPCPF 120
Query: 121 EYVRGRNGKALIKVMPEFIVRLVSP----GGAYGGEGGGFLCSTPELKKHYDQLVGTSKG 180
EYVRG NG+ LIKVMPEFIVRL+SP GG GG GGGFLCSTPELKKHYDQLVG++KG
Sbjct: 121 EYVRGTNGRVLIKVMPEFIVRLISPAAVDGGESGGGGGGFLCSTPELKKHYDQLVGSTKG 180
Query: 181 QVWSPSLETISEYKIRYSPCRFVGFKVKQKEG 208
QVWSP LETISEYKIRYSPCRFVGFK+KQKEG
Sbjct: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212
BLAST of CmoCh10G009340 vs. ExPASy TrEMBL
Match:
A0A0A0LZV5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G627480 PE=4 SV=1)
HSP 1 Score: 336.3 bits (861), Expect = 9.3e-89
Identity = 163/212 (76.89%), Postives = 183/212 (86.32%), Query Frame = 0
Query: 1 MGNAMSPCLIPPSITNRH-RSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADS 60
MGNA+SPCL+ SI+ H R S VKL+F++GPT+ LAG HHFAGEIMFQFPDM+VCHA+S
Sbjct: 1 MGNAVSPCLLSISISRCHRRPSTVKLVFTNGPTKFLAGDHHFAGEIMFQFPDMMVCHAES 60
Query: 61 FFIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPF 120
FFIGH IPSL+I+D+L+AGETYL+LPIDRF+ DVLSTSSLA IGAGN + EKFS CPF
Sbjct: 61 FFIGHPIPSLSIDDQLIAGETYLILPIDRFASVDVLSTSSLATIGAGNMSVEKFSGPCPF 120
Query: 121 EYVRGRNGKALIKVMPEFIVRLVSPGGAYGGE----GGGFLCSTPELKKHYDQLVGTSKG 180
EYVRG NGK LIKVMPEFIVRL+S GGE GGGFLCSTPELKKHYDQLVG++KG
Sbjct: 121 EYVRGTNGKVLIKVMPEFIVRLISQAAMDGGESEGGGGGFLCSTPELKKHYDQLVGSTKG 180
Query: 181 QVWSPSLETISEYKIRYSPCRFVGFKVKQKEG 208
QVWSP LETISEYKIRYSPCRFVGFK+KQKEG
Sbjct: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212
BLAST of CmoCh10G009340 vs. TAIR 10
Match:
AT5G12340.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 173.7 bits (439), Expect = 1.5e-43
Identity = 102/223 (45.74%), Postives = 131/223 (58.74%), Query Frame = 0
Query: 1 MGNAMSPCLIPPSITNRHRSSAVKLIFSSGPTRILAG-SHHFAGEIMFQFPDMIVCHADS 60
MG ++ P I R + + F T+ L G H AGEIMF+FPD IVCHADS
Sbjct: 1 MGRSLINSCFP--IIRRRQGIVTLVFFEHVSTKTLCGFKKHVAGEIMFEFPDQIVCHADS 60
Query: 61 FFIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKF------ 120
F+IG +IP+LA++D L+ G+TY VLPI+RF +L+TS L+ + E
Sbjct: 61 FYIGRQIPALAMDDYLIPGQTYFVLPIERFQYK-ILTTSCLSIFNSNLENVRSNTPPLNF 120
Query: 121 ---SSSCPFEYVRGRNGKALIKVMPEFIVRLVSPG-------GAYGGEGGGFLCSTPELK 180
SS PFEY +G NGK LIKV PEFI+ L+ GE +C++PELK
Sbjct: 121 TAPSSPPPFEYSQGPNGKILIKVSPEFIISLICKNRNIREEEATSCGENSA-ICNSPELK 180
Query: 181 KHYDQLVGTSKGQVWSPSLETISEYKIRYSPCRFVGFKVKQKE 207
K YDQLVGT + +WSP+L+TISE+KIR SP RF G KQ E
Sbjct: 181 KQYDQLVGT-REHMWSPNLQTISEHKIRVSPLRFFGLNRKQDE 218
BLAST of CmoCh10G009340 vs. TAIR 10
Match:
AT1G28190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12340.1); Has 166 Blast hits to 162 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 5; Plants - 124; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). )
HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 65/198 (32.83%), Postives = 93/198 (46.97%), Query Frame = 0
Query: 8 CLIP-PSITNRHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADSFFIGHRI 67
CL P P T+ +KL+ S G ++ E+ FP +C +D +IG +
Sbjct: 25 CLHPRPDRTS--NGGRIKLVRSDGSLQVY-DRPVVVSELTKDFPKHKICRSDLLYIGQKT 84
Query: 68 PSLAIEDKLLAGETYLVLPIDRFSLNDV--LSTSSLAAIGAGNEAAEKFSSS-CPFEYVR 127
P L+ + L G Y +LP D F ND+ L+ ++L G +K PF +
Sbjct: 85 PVLSETETLKLGLNYFLLPSDFFK-NDLSFLTIATLKTPQNGGVLVKKTQQQPQPFLIQK 144
Query: 128 GRNGKAL-IKVMPEFIVRLVSPGGAY-----------GGEGGGFLCSTPELKKHYDQLVG 187
G G+ L I+V EF+ L+ G GGEG G +C+T +LKK Y QLVG
Sbjct: 145 GEKGERLRIRVSEEFVSELMMEGKKNRVNEEEEEEEGGGEGEGRVCTTVKLKKDYVQLVG 204
Query: 188 TSKGQVWSPSLETISEYK 190
+ W P LETI+E K
Sbjct: 205 LRR---WKPKLETITETK 215
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1HB88 | 3.4e-115 | 100.00 | uncharacterized protein LOC111461744 OS=Cucurbita moschata OX=3662 GN=LOC1114617... | [more] |
A0A6J1JKY3 | 1.4e-113 | 98.07 | uncharacterized protein LOC111485518 OS=Cucurbita maxima OX=3661 GN=LOC111485518... | [more] |
A0A5A7UN34 | 2.0e-91 | 79.25 | DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... | [more] |
A0A1S3BP11 | 2.0e-91 | 79.25 | uncharacterized protein LOC103491983 OS=Cucumis melo OX=3656 GN=LOC103491983 PE=... | [more] |
A0A0A0LZV5 | 9.3e-89 | 76.89 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G627480 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT5G12340.1 | 1.5e-43 | 45.74 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
AT1G28190.1 | 1.1e-14 | 32.83 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |