CmoCh10G008690 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G008690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein TIC 20
Location	Cmo_Chr10: 4129001 .. 4129633 (-)
RNA-Seq Expression	CmoCh10G008690
Synteny	CmoCh10G008690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAATGGCTTCCTGTTCCATCCCTCTCCTCAATCTCTCTATCAAACCCGCCATTAAAGCCGCACTAATACCTCACTACTCCGCCATCAAATCTCGCCACTGTTTTTCTCTCCCCCTTCTTCCCTCCAAACCCGCAAAATCTCCCGCCATTCGCATGTCCTACAACCCTACTCCGGCCACCGACCGCCTCATCTCCGCCGTCGCCTACACTCTCCCCTTCTTCAACTCCCTCCAGTATGGTCGCTTCCTCTTCGCTCAGTACCCGGTTCTCGGCCTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCGCACTCGAGCTTCATCGCCTTCTTCGCCTTCTACTTGGGCGTGGTCCGTAACCCTAGCTTCAGTCGCTACGCGAGGTTCAATTCGATGCAGGCGTTGACTCTGGACGTGCTGCTGGTGGTGCCGTTGTTGGTACAGAGGATTCTGAGTCCCGGTCAAAGCGGATTAGGGTTCCAGATCATGGCTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTTTATAGTGTGGTTTCCTGCATTCTGGGTCGAACCCCTCACCTACCCATTGTTGCTGATGCTGCTGGCAGGCAGGTTTAG

mRNA sequence

ATGACAATGGCTTCCTGTTCCATCCCTCTCCTCAATCTCTCTATCAAACCCGCCATTAAAGCCGCACTAATACCTCACTACTCCGCCATCAAATCTCGCCACTGTTTTTCTCTCCCCCTTCTTCCCTCCAAACCCGCAAAATCTCCCGCCATTCGCATGTCCTACAACCCTACTCCGGCCACCGACCGCCTCATCTCCGCCGTCGCCTACACTCTCCCCTTCTTCAACTCCCTCCAGTATGGTCGCTTCCTCTTCGCTCAGTACCCGGTTCTCGGCCTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCGCACTCGAGCTTCATCGCCTTCTTCGCCTTCTACTTGGGCGTGGTCCGTAACCCTAGCTTCAGTCGCTACGCGAGGTTCAATTCGATGCAGGCGTTGACTCTGGACGTGCTGCTGGTGGTGCCGTTGTTGGTACAGAGGATTCTGAGTCCCGGTCAAAGCGGATTAGGGTTCCAGATCATGGCTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTTTATAGTGTGGTTTCCTGCATTCTGGGTCGAACCCCTCACCTACCCATTGTTGCTGATGCTGCTGGCAGGCAGGTTTAG

Coding sequence (CDS)

ATGACAATGGCTTCCTGTTCCATCCCTCTCCTCAATCTCTCTATCAAACCCGCCATTAAAGCCGCACTAATACCTCACTACTCCGCCATCAAATCTCGCCACTGTTTTTCTCTCCCCCTTCTTCCCTCCAAACCCGCAAAATCTCCCGCCATTCGCATGTCCTACAACCCTACTCCGGCCACCGACCGCCTCATCTCCGCCGTCGCCTACACTCTCCCCTTCTTCAACTCCCTCCAGTATGGTCGCTTCCTCTTCGCTCAGTACCCGGTTCTCGGCCTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCGCACTCGAGCTTCATCGCCTTCTTCGCCTTCTACTTGGGCGTGGTCCGTAACCCTAGCTTCAGTCGCTACGCGAGGTTCAATTCGATGCAGGCGTTGACTCTGGACGTGCTGCTGGTGGTGCCGTTGTTGGTACAGAGGATTCTGAGTCCCGGTCAAAGCGGATTAGGGTTCCAGATCATGGCTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTTTATAGTGTGGTTTCCTGCATTCTGGGTCGAACCCCTCACCTACCCATTGTTGCTGATGCTGCTGGCAGGCAGGTTTAG

Protein sequence

MTMASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLGVVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVFSVLCFLYSVVSCILGRTPHLPIVADAAGRQV

Homology

[Close]

BLAST of CmoCh10G008690 vs. ExPASy Swiss-Prot
Match: O82251 (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.0e-60
Identity = 113/169 (66.86%), Postives = 136/169 (80.47%), Query Frame = 0


Query: 43  SKPAKSPAIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPIL 102
           S+ A +   R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LGL FEP+ PIL
Sbjct: 40  SRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPIL 99

Query: 103 GLYRSIPHSSFIAFFAFYLGVVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQ- 162
            LYRS+P++SF+AFF  YLGVVRN SFSRY RFN+MQA+TLDVLL VP+L+ RIL PGQ 
Sbjct: 100 NLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQG 159

Query: 163 SGLGFQIMAWSHNGLFVFSVLCFLYSVVSCILGRTPHLPIVADAAGRQV 211
            G G + M W H G+FVFS +CF+Y VVS +LG+TP++P VADAAGRQ+
Sbjct: 160 GGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]

BLAST of CmoCh10G008690 vs. ExPASy Swiss-Prot
Match: Q9FM67 (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-32
Identity = 67/151 (44.37%), Postives = 100/151 (66.23%), Query Frame = 0


Query: 60  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAF 119
           A+DR+ISAV Y  PFF+ +QYG+F+  QY    +  +PL P +  ++S P + F+ F   
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 120 YLGVVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVF 179
           Y  VVRNP+FSRY RFN+MQA+ LDVLL+ P L++R  +P + G G  ++    + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 180 SVLCFLYSVVSCILGRTPHLPIVADAAGRQV 211
            ++  +Y   +C+ G TP LP+VA+AA RQV
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]

BLAST of CmoCh10G008690 vs. ExPASy Swiss-Prot
Match: P73387 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.1e-20
Identity = 55/152 (36.18%), Postives = 91/152 (59.87%), Query Frame = 0


Query: 62  DRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYL 121
           DR  SA+ Y +P  ++  +G FL  Q+PVL + + P++P+L  Y   P +SFI F   ++
Sbjct: 11  DRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFIIFIVLFM 70

Query: 122 GVVRNPSFSRYARFNSMQALTLDVLL-VVPLLVQRILSP--GQSGLGFQIMAWSHNGLFV 181
            VVRN + S + RFN+MQA+ + +LL +  L+V  ++ P  GQ GL  + +   +N  F+
Sbjct: 71  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQ-GLVTETL---YNFAFL 130

Query: 182 FSVLCFLYSVVSCILGRTPHLPIVADAAGRQV 211
            ++ C  + +V  +LGR   +P ++DAA  QV
Sbjct: 131 GALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

[Close]

BLAST of CmoCh10G008690 vs. ExPASy TrEMBL
Match: A0A6J1HBN6 (Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111461378 PE=3 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.3e-111
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MTMASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPA 60
           MTMASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPA
Sbjct: 1   MTMASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPA 60

Query: 61  TDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFY 120
           TDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFY
Sbjct: 61  TDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFY 120

Query: 121 LGVVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVFS 180
           LGVVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVFS
Sbjct: 121 LGVVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVFS 180

Query: 181 VLCFLYSVVSCILGRTPHLPIVADAAGRQV 211
           VLCFLYSVVSCILGRTPHLPIVADAAGRQV
Sbjct: 181 VLCFLYSVVSCILGRTPHLPIVADAAGRQV 210

[Close]

BLAST of CmoCh10G008690 vs. ExPASy TrEMBL
Match: A0A6J1JJ22 (Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111485044 PE=3 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 5.7e-110
Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 0


Query: 1   MTMASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPA 60
           MTMASCSIPLLNLS KPAIKAALIPHYSAIKSRHCFSLPLLPS+PAKSPAIRMSYNPTPA
Sbjct: 1   MTMASCSIPLLNLSTKPAIKAALIPHYSAIKSRHCFSLPLLPSRPAKSPAIRMSYNPTPA 60

Query: 61  TDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFY 120
           TDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFY
Sbjct: 61  TDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFY 120

Query: 121 LGVVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVFS 180
           LGVVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPG+SGLGFQIMAWSHNGLFVFS
Sbjct: 121 LGVVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGRSGLGFQIMAWSHNGLFVFS 180

Query: 181 VLCFLYSVVSCILGRTPHLPIVADAAGRQV 211
           VLCFLYSVVSCILGRTPHLPIVADAAGRQV
Sbjct: 181 VLCFLYSVVSCILGRTPHLPIVADAAGRQV 210

[Close]

BLAST of CmoCh10G008690 vs. ExPASy TrEMBL
Match: A0A0A0LXS7 (Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.2e-93
Identity = 178/208 (85.58%), Postives = 189/208 (90.87%), Query Frame = 0


Query: 3   MASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPATD 62
           MAS SIPLLNLS K +I+AAL PH SAIKSRH  SLP LPSK  K   IRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG AFEPLLPILGLYRSIPHSSF+AFFA YLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVFSVL 182
           VVRNPSF+ Y RFNSMQA+TLDVLLVVPLL+QRILSPG+SG+GF+IM WSHNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 183 CFLYSVVSCILGRTPHLPIVADAAGRQV 211
           CFLYSVVSC+LGRTPHLPIVADAAGRQ+
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]

BLAST of CmoCh10G008690 vs. ExPASy TrEMBL
Match: A0A1S3B9C6 (Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103487217 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.8e-93
Identity = 179/211 (84.83%), Postives = 190/211 (90.05%), Query Frame = 0


Query: 3   MASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPS---KPAKSPAIRMSYNPTP 62
           MAS SIPLLNLS K AI+AAL PH S IKSRH FSLP LPS   K AKS  IRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 63  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAF 122
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG AFEPLLPILGLYRSIPHSSF+AFFA 
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 123 YLGVVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVF 182
           YLGVVRNPSFS Y RFNSMQA+TLDVLLVVPLL+QRILSPG+ G+GF+IM WSHNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 183 SVLCFLYSVVSCILGRTPHLPIVADAAGRQV 211
           SVLCFLYS+VSC+LGRTPHLPIVADAAGRQ+
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]

BLAST of CmoCh10G008690 vs. ExPASy TrEMBL
Match: A0A5D3E499 (Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00600 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.8e-93
Identity = 179/211 (84.83%), Postives = 190/211 (90.05%), Query Frame = 0


Query: 3   MASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPS---KPAKSPAIRMSYNPTP 62
           MAS SIPLLNLS K AI+AAL PH S IKSRH FSLP LPS   K AKS  IRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 63  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAF 122
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG AFEPLLPILGLYRSIPHSSF+AFFA 
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 123 YLGVVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVF 182
           YLGVVRNPSFS Y RFNSMQA+TLDVLLVVPLL+QRILSPG+ G+GF+IM WSHNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 183 SVLCFLYSVVSCILGRTPHLPIVADAAGRQV 211
           SVLCFLYS+VSC+LGRTPHLPIVADAAGRQ+
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]

BLAST of CmoCh10G008690 vs. TAIR 10
Match: AT2G47840.1 (Uncharacterised conserved protein ycf60 )

HSP 1 Score: 233.0 bits (593), Expect = 2.2e-61
Identity = 113/169 (66.86%), Postives = 136/169 (80.47%), Query Frame = 0


Query: 43  SKPAKSPAIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPIL 102
           S+ A +   R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LGL FEP+ PIL
Sbjct: 40  SRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPIL 99

Query: 103 GLYRSIPHSSFIAFFAFYLGVVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQ- 162
            LYRS+P++SF+AFF  YLGVVRN SFSRY RFN+MQA+TLDVLL VP+L+ RIL PGQ 
Sbjct: 100 NLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQG 159

Query: 163 SGLGFQIMAWSHNGLFVFSVLCFLYSVVSCILGRTPHLPIVADAAGRQV 211
            G G + M W H G+FVFS +CF+Y VVS +LG+TP++P VADAAGRQ+
Sbjct: 160 GGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]

BLAST of CmoCh10G008690 vs. TAIR 10
Match: AT5G55710.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-33
Identity = 67/151 (44.37%), Postives = 100/151 (66.23%), Query Frame = 0


Query: 60  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAF 119
           A+DR+ISAV Y  PFF+ +QYG+F+  QY    +  +PL P +  ++S P + F+ F   
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 120 YLGVVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVF 179
           Y  VVRNP+FSRY RFN+MQA+ LDVLL+ P L++R  +P + G G  ++    + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 180 SVLCFLYSVVSCILGRTPHLPIVADAAGRQV 211
            ++  +Y   +C+ G TP LP+VA+AA RQV
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

The following BLAST results are available for this feature:

BLAST of CmoCh10G008690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82251	3.0e-60	66.86	Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=...	[more]
Q9FM67	1.6e-32	44.37	Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 ...	[more]
P73387	3.1e-20	36.18	Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ...	[more]

BLAST of CmoCh10G008690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HBN6	2.3e-111	100.00	Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111461378 PE=3 SV=1	[more]
A0A6J1JJ22	5.7e-110	98.57	Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111485044 PE=3 SV=1	[more]
A0A0A0LXS7	2.2e-93	85.58	Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=3 SV=1	[more]
A0A1S3B9C6	4.8e-93	84.83	Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103487217 PE=3 SV=1	[more]
A0A5D3E499	4.8e-93	84.83	Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G006...	[more]

BLAST of CmoCh10G008690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47840.1	2.2e-61	66.86	Uncharacterised conserved protein ycf60	[more]
AT5G55710.1	1.1e-33	44.37	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 63..206 e-value: 4.6E-43 score: 147.1
IPR005691	Chloroplast protein import component Tic20	PANTHER	PTHR33510	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 50..210
None	No IPR available	PANTHER	PTHR33510:SF5	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 50..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G008690.1	CmoCh10G008690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane