CmoCh10G007140 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G007140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S30
LocationCmo_Chr10: 3280764 .. 3281745 (+)
RNA-Seq ExpressionCmoCh10G007140
SyntenyCmoCh10G007140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCCTCTGCGGCTTGTCATCGGACGTTAAGCACCAGGAAGGTACCGAAGCAAGCAATCTGCCATGGGTAAGCGAAACCCTAACTTGTCATATGACGACTTTCGATCATTCAAAGTGTATTTAGTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTCTTGTGTTTATCGGTTCTTTCATCTGTATGAATTTGTTTGTGTGTTGTGTTGGTTTAATCGATTTTCAGGTAAGGTTCACGGATCTCTGGCTCGTGCTGGGAAGGTGAGAGGTCAAACTCCGAAAGTAGCGAAGCAGGACAAGAAGAAGAAACCCCGTGGGCGTGCGCACAAGCGGATGCAATACAATCGCAGATTCGTCACTGCTGGTAAACAATCGTTGTTAAATTCATTTGTTTTTTCCAATGTGTTGCCGGTCTAGAATATCTGATTTAGGTTTTTATTGTGTCAATACTGTATCCAATCACTATTTTACGGATTATGGTAGTTGTGTTATTTGTTAGATTACACTTGGCCCTGTATCAGGATCGTTATTTTGATCACATTGTTATGATTTTCCTATTAGGATTTGAGAAGCATCATTCTAACGTATGATTTAATTTTGTTTGATCTTTATAGTGGTTGGCTTTGGAAAGAAGAGAGGACCCAACTCCTCTGAGAAGTAAGCAAACGGCGAAATCATGAGGAGATTTTCCGCTCGAGAGGCATGGTTCTGTGATTTATTAAGCTTTTTCCTCCTATTTCTCATAGATGTTTTAGTTTATTGAAGATTTTGACCGTGTTAAAGATACTTATTTCGACAATATATTAA

mRNA sequence

ATCTCCTCTGCGGCTTGTCATCGGACGTTAAGCACCAGGAAGGTACCGAAGCAAGCAATCTGCCATGGGTAAGGTTCACGGATCTCTGGCTCGTGCTGGGAAGGTGAGAGGTCAAACTCCGAAAGTAGCGAAGCAGGACAAGAAGAAGAAACCCCGTGGGCGTGCGCACAAGCGGATGCAATACAATCGCAGATTCGTCACTGCTGTGGTTGGCTTTGGAAAGAAGAGAGGACCCAACTCCTCTGAGAAATGTTTTAGTTTATTGAAGATTTTGACCGTGTTAAAGATACTTATTTCGACAATATATTAA

Coding sequence (CDS)

ATGGGTAAGGTTCACGGATCTCTGGCTCGTGCTGGGAAGGTGAGAGGTCAAACTCCGAAAGTAGCGAAGCAGGACAAGAAGAAGAAACCCCGTGGGCGTGCGCACAAGCGGATGCAATACAATCGCAGATTCGTCACTGCTGTGGTTGGCTTTGGAAAGAAGAGAGGACCCAACTCCTCTGAGAAATGTTTTAGTTTATTGAAGATTTTGACCGTGTTAAAGATACTTATTTCGACAATATATTAA

Protein sequence

MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKCFSLLKILTVLKILISTIY
Homology
[Close]
BLAST of CmoCh10G007140 vs. ExPASy Swiss-Prot
Match: P49689 (40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 6.5e-27
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of CmoCh10G007140 vs. ExPASy Swiss-Prot
Match: P62866 (40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]
BLAST of CmoCh10G007140 vs. ExPASy Swiss-Prot
Match: P62860 (40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]
BLAST of CmoCh10G007140 vs. ExPASy Swiss-Prot
Match: P62861 (40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]
BLAST of CmoCh10G007140 vs. ExPASy Swiss-Prot
Match: P62862 (40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]
BLAST of CmoCh10G007140 vs. ExPASy TrEMBL
Match: A0A5N5KNX7 (40S ribosomal protein S30 OS=Salix brachista OX=2182728 GN=DKX38_018721 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.4e-26
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EKCF 65
          EK F
Sbjct: 61 EKLF 64

[Close]
BLAST of CmoCh10G007140 vs. ExPASy TrEMBL
Match: A0A368PSS0 (40S ribosomal protein S30 OS=Setaria italica OX=4555 GN=SETIT_1G356000v2 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of CmoCh10G007140 vs. ExPASy TrEMBL
Match: M5WRX6 (40S ribosomal protein S30 OS=Prunus persica OX=3760 GN=PRUPE_3G053900 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of CmoCh10G007140 vs. ExPASy TrEMBL
Match: A0A6J1KXK5 (40S ribosomal protein S30 OS=Cucurbita maxima OX=3661 GN=LOC111498467 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of CmoCh10G007140 vs. ExPASy TrEMBL
Match: A0A7I8KYK5 (40S ribosomal protein S30 OS=Spirodela intermedia OX=51605 GN=SI7747_09012508 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of CmoCh10G007140 vs. TAIR 10
Match: AT2G19750.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.9 bits (302), Expect = 4.6e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of CmoCh10G007140 vs. TAIR 10
Match: AT4G29390.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.9 bits (302), Expect = 4.6e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of CmoCh10G007140 vs. TAIR 10
Match: AT5G56670.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.9 bits (302), Expect = 4.6e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

The following BLAST results are available for this feature:
BLAST of CmoCh10G007140 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P496896.5e-2796.7740S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3[more]
P628663.2e-1879.3140S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1[more]
P628603.2e-1879.3140S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1[more]
P628613.2e-1879.3140S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1[more]
P628623.2e-1879.3140S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1[more]
BLAST of CmoCh10G007140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N5KNX77.4e-2698.4440S ribosomal protein S30 OS=Salix brachista OX=2182728 GN=DKX38_018721 PE=3 SV=... [more]
A0A368PSS02.8e-25100.0040S ribosomal protein S30 OS=Setaria italica OX=4555 GN=SETIT_1G356000v2 PE=3 SV... [more]
M5WRX62.8e-25100.0040S ribosomal protein S30 OS=Prunus persica OX=3760 GN=PRUPE_3G053900 PE=3 SV=1[more]
A0A6J1KXK52.8e-25100.0040S ribosomal protein S30 OS=Cucurbita maxima OX=3661 GN=LOC111498467 PE=3 SV=1[more]
A0A7I8KYK52.8e-25100.0040S ribosomal protein S30 OS=Spirodela intermedia OX=51605 GN=SI7747_09012508 PE... [more]
BLAST of CmoCh10G007140 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G19750.14.6e-2896.77Ribosomal protein S30 family protein [more]
AT4G29390.14.6e-2896.77Ribosomal protein S30 family protein [more]
AT5G56670.14.6e-2896.77Ribosomal protein S30 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006846Ribosomal protein S30PFAMPF04758Ribosomal_S30coord: 3..59
e-value: 3.7E-30
score: 103.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..39
NoneNo IPR availablePANTHERPTHR12650:SF2840S RIBOSOMAL PROTEIN S30coord: 1..62
NoneNo IPR availablePANTHERPTHR1265040S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBIcoord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G007140.1CmoCh10G007140.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome