CmoCh10G004510 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G004510
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionSmall nuclear ribonucleoprotein E
LocationCmo_Chr10: 2033077 .. 2037319 (-)
RNA-Seq ExpressionCmoCh10G004510
SyntenyCmoCh10G004510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTAGTTATTGCGACAGCGAATGAGGTGGGACAACAATTTCCTTCACTGCTGTTGTTTCCTTGTAATTCCCAAAAACAAATTATTGTTAATCACATGGTCTCCTCCCCTGTCCAAATCACAATTCCTCTAGATATTCTCTACTATAAGCGTAACCTTTAGTAGTTTTGTTTTAAACTTCTTCAAAAAGCCTCATTATCAATGAAGATAGTATTTCTCACTTGTAAACTCGTAATCTTTCGGTTTACTCAATAATTCTCACCAAAATTAATCAAGTTTTTAATATTATTATGTGGTCTTTTTTTTACTTTTTTTTTTTTAATTTTTTTTTTTTATTCCGGTCTGGATTATGTGAGCGCTAATTTCGTTTGGAAAAGAGCGGGACCATATAATTAGGGCGCGACTAAAATGCGCGCGATGCTTTTAGTTCGAAGCATCGGTCTCTGGACGTGAAGTGGGAGTGCTCTAGGGTTTACATTTCGTATCGAAGATTCTCCTCACTGCCAAAACAAATTCGGTAGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACTCAACCGATTGTACGTGCGGAATCTCTTCATTTTTCTTCCTTCCTTGATTATACTTTGGGCTGCCTTTATCTATTTCTGCGTTTTACTGATAATTTCCGGATGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTCTCTTTTGATCACGGTGTCGCTGTATCTTTGGAACTAGAACTTGATATTCAGATTTCTTCAAAGTGTAAGAACTTACGTCAATGCTTAATCATCTCACCTGTTTTTTTCTGGCCTAACTCGGTTTTCTGATTCGAGTTTGTAATCAATGCAGAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAAGACCTTAGGATCGAAGGCCGAATTATTGTAAGGTTTTGCTTATTGCTGCTTACTATTTTCTTTTTATACTGGCTATTTATGTAATGCGGATTGAAGCCTACGTTTTCCTATACGTCGATCTTTTGGCATGTATTCATGATTGATAGATGCTCCAACTTTATTGTTGGACAATTTACTCTCTCATATGCTCCTTACAGAAATCCTCTGATTTCAGTGGAGCACAGGACATGAGTGTTAAAAATATCTTCGATATCCTGGATAAAGACCTCAAGCTCCTACTTCACATCCACATCATGAATTTCCGCAAAATTTCTAGAGTTGAAACAAATTCAATCGTGTAGGCGGTTTATTAGGTACAAGTAGAATTGGAACCTACTTGAAATTCATGTTACGTAATAAATGGGCATGCCTTCAAGATTGTGCTTTAGTATTTCGATTTCCTTTTACATTGCTGTCAAAAGTTGCACACATGCTGGAAATTGGGTGAAATTTGGGACATAGCTTGAAATTGCCGCTCATGTTGGTTATCACCTAAACTCGCTCTTGGAATAGGAATGGATCATAGTACAGAATTCTAATTTCATATTTCTTTGTGTAGTTAGTGAGTGTTATTTGAATCTCAGTTCTAAATAGATCAAGTCTCTTATGGAAAAAATTTCACGGTTAGAGTTATATCTCAGTATTCTTTCCAATTCAACCAGACCGTTGGGGTTGGAACTAGGTTTCCCTGAAACCTCATAATGCCAAAGGCAATGGTCAATTACTTCTATGATCTGCAGTTTTCTCCATGAAATTGTTTCATCTTCTGTTGCCGGAGTGCACGCCTTGAAATGAAAATTGCTTTAAGCGATGTCCCCATGCCTGGTAATTGATTTCCTTCTGTCTATTCGTCCATGAAGTTATTTTATTCTTCCACATAAGGTTGCGCCCTGTTCTTACTCAATTAAGATGGTTTCCTTTCTCTTCTGTGCGCAATTCTCCTCATCAATCTATGAAAAATGTGACCAGTTCTGCAGAAAACTTTTCCTACCAAGGACTGAACGCTGTTTTCAGAATTCAGACAGCAAGCATGTTTGGTCGTTATTCCTCTTGTGAACTCAGTGAATCTAGTCTTTAGTCTCTTAACTTTTGATATTTAATTTAATGAAATAGCGTATTTCATGTCTCTTTCATCTACTTCATCTTAAAAATTACTGCAATGCTAGGAAGCACAAACACTTTGCTCGACAAAGTGTCTGTGTTAGACACAAATATGTTTGGACACACTCTCAACACTTGTCCAACACACAAAATTGCATGTTTCTTTTTTTTTAATAGTTAAGGACACGTCTCACACACAGGGGACATACCTAAAAAACCTCAAACCTTTGAAACGGGGCGGCACTGAGGTGAAGTTAATAGGGGGTAGAATGGAGGGAAATCACAAATGAAGGTGAAGAGAATAAATGAAGACGAAAGAATCCGTGGAAAAGAGGGCTTCGTGGGGTTTATTTCTAAAAGAAGTACAACTTTTTTATAACCTTTCATGTTGAGTCTGGCAAGTTGGGCTTTTGTTCTTTATTGGGTTTCTTTAAGTGGGCTTAGATGATTCAACATATTGGTCATTTAATTTTTATGCACTATTTTTAATTTGAACTTAAATTCAATAGGGATTTTTTCTTGATTCACGTTTTTTTAAAAATAGTTAGTAAAAAGGTATACTTTTTTCAGTTTGATTTTTTAATATTATCTAAATAACATAACGGGTCCTCAACATGTCCATGTCCTACATTTTTAGAAATTGGTGTGTTGTCATGTCCATGTCGTTTCTGCGTCTGTGTCCGTGCTTTTTAGTTGCAATGTAATTCTTCTTAGTTTCTTTTGTGCATCCATTGCTTCTGATTTCTATTCTAAGCAAGCAAAAAGCTTTAGCGATAGAGTCCTCGATGCACTTTGAAAGACATTGTTTGTAGTTCTACTGCAACTAATCTATCATACCCTGTCTCTGATCACTTTTTCCAATATATCTCATTCTGTAGTTCAATTATGTAATTAGGGAGTAAATAGTCTGCTCGTTGATTGTTAAGTGATCTCAGTATGCTGCTTATCTTTTCATTCACTAGACCCACTGCTAGGACCGTAATTTTCAGTGTTGAATGAATATTTCCCCAAGCCTTGGGCTTAGGTTTCCTCCCTTTTATAATTTCATACAATCTATGAAATTGTCCCTCACCCAAAAAAGATTGTTGTTTGGTCATCTAATTTTTCCCAATTAGCTAACAAAATTTATCTTGTAGCTTTCTCAACTGTTAGCTTATATGCCTCAGCTTCTGTAATTTACATCCAAGAATATGTTCATGGATTATCTTGAACTACAAAATTTGATTTTATTGGCCCTTCGTTTGTTGTACTTACCTATGTTTTGGCTGATTATTAAATGCTTTTATTATAACTTATACAGGAGGTAGTCAGTGGAAGCTGTTTCTTTTATATTAATGTAATCATTTTCTTGACCGAACAGGGATTTGACGAGTACATGAATTTAGTACTTGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGTAAAAAAGCACTCGGTATGTCTTCTTTCCCCCTCATTTGCTGTTGTCTTCTCTATACTTGAGTGGCGTTATCTGAAATGCCTTTCGTTTTTCCCTTCAGGGAGGATTCTTCTCAAAGGAGACAATATAACGTTAATGATGAATACGTAAGTGAAATTGATCTTGCATTTCCTCTCCATTTCCCTTACACCAATTAACTTCTTTTTTTTCTTCAAAACTTCAGGGGAAAATGATGATCATCCAGCAGACCACATTATTGAGATAGTTTTCACTTCCATCGTATGGCGTTATAGCTTTTACAATCATCTTCCTTTTGGAATTGTATCTTTCAACGTTTTAATCCATCGATGATTAACGAGTTATTATTTGGATGTATAATGTTATTTTGCTGTTGGTAGATAATATCCTTTTATTCAACTCCTAATTTATCGTCCTTACAACCGGTTGTTTATTCGTCCAATCCTTGAAATTATGGAACTAGGGTTCCTCGAATCGTGAAC

mRNA sequence

ATGGGGGGTTTACATTTCGTATCGAAGATTCTCCTCACTGCCAAAACAAATTCGGTAGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACTCAACCGATTAACTTGATATTCAGATTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAAGACCTTAGGATCGAAGGCCGAATTATTGGATTTGACGAGTACATGAATTTAGTACTTGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGTAAAAAAGCACTCGGGAGGATTCTTCTCAAAGGAGACAATATAACGTTAATGATGAATACGGGAAAATGATGATCATCCAGCAGACCACATTATTGAGATAGTTTTCACTTCCATCGTATGGCGTTATAGCTTTTACAATCATCTTCCTTTTGGAATTGTATCTTTCAACGTTTTAATCCATCGATGATTAACGAGTTATTATTTGGATGTATAATGTTATTTTGCTGTTGGTAGATAATATCCTTTTATTCAACTCCTAATTTATCGTCCTTACAACCGGTTGTTTATTCGTCCAATCCTTGAAATTATGGAACTAGGGTTCCTCGAATCGTGAAC

Coding sequence (CDS)

ATGGGGGGTTTACATTTCGTATCGAAGATTCTCCTCACTGCCAAAACAAATTCGGTAGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACTCAACCGATTAACTTGATATTCAGATTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAAGACCTTAGGATCGAAGGCCGAATTATTGGATTTGACGAGTACATGAATTTAGTACTTGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGTAAAAAAGCACTCGGGAGGATTCTTCTCAAAGGAGACAATATAACGTTAATGATGAATACGGGAAAATGA

Protein sequence

MGGLHFVSKILLTAKTNSVAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNTGK
Homology
[Close]
BLAST of CmoCh10G004510 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.8e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 25  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 84
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 85  KSKKALGRILLKGDNITLMMN 106
           KS+K LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of CmoCh10G004510 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.8e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 25  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 84
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 85  KSKKALGRILLKGDNITLMMN 106
           KS+K LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of CmoCh10G004510 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.8e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 25  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 84
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 85  KSKKALGRILLKGDNITLMMN 106
           KS+K LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of CmoCh10G004510 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.8e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 25  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 84
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 85  KSKKALGRILLKGDNITLMMN 106
           KS+K LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of CmoCh10G004510 vs. ExPASy Swiss-Prot
Match: A1XQR9 (Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.8e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 25  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 84
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 85  KSKKALGRILLKGDNITLMMN 106
           KS+K LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of CmoCh10G004510 vs. ExPASy TrEMBL
Match: A0A1J6IPM5 (Sm protein E OS=Nicotiana attenuata OX=49451 GN=A4A49_04200 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.1e-40
Identity = 92/110 (83.64%), Postives = 98/110 (89.09%), Query Frame = 0 

Query: 1   MGGLH--FVSKILLTAKTNSVAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR 60
           +GGL     S++    +T  +AMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR
Sbjct: 161 IGGLRGDISSELYFVGETGVLAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR 220

Query: 61  IEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNTGK 109
           IEGRIIGFDEYMNLVLDDAEEVNVKKKS+K LGRILLKGDNITLMMNTGK
Sbjct: 221 IEGRIIGFDEYMNLVLDDAEEVNVKKKSRKQLGRILLKGDNITLMMNTGK 270

[Close]
BLAST of CmoCh10G004510 vs. ExPASy TrEMBL
Match: A0A6J1JLU4 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111485738 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.1e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 21  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 80
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 81  NVKKKSKKALGRILLKGDNITLMMNTGK 109
           NVKKKSKKALGRILLKGDNITLMMNTGK
Sbjct: 61  NVKKKSKKALGRILLKGDNITLMMNTGK 88

[Close]
BLAST of CmoCh10G004510 vs. ExPASy TrEMBL
Match: A0A6J1E6Q3 (Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111429915 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.1e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 21  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 80
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 81  NVKKKSKKALGRILLKGDNITLMMNTGK 109
           NVKKKSKKALGRILLKGDNITLMMNTGK
Sbjct: 61  NVKKKSKKALGRILLKGDNITLMMNTGK 88

[Close]
BLAST of CmoCh10G004510 vs. ExPASy TrEMBL
Match: A0A6J1ICX7 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111471407 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.6e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 21  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 80
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 81  NVKKKSKKALGRILLKGDNITLMMNTGK 109
           NVKKKSKK+LGRILLKGDNITLMMNTGK
Sbjct: 61  NVKKKSKKSLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of CmoCh10G004510 vs. ExPASy TrEMBL
Match: A0A6J1F0M2 (Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111438400 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.6e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 21  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 80
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 81  NVKKKSKKALGRILLKGDNITLMMNTGK 109
           NVKKKSKK+LGRILLKGDNITLMMNTGK
Sbjct: 61  NVKKKSKKSLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of CmoCh10G004510 vs. NCBI nr
Match: XP_038880616.1 (small nuclear ribonucleoprotein E-like isoform X1 [Benincasa hispida])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 18  SVAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDA 77
           S+AMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDA
Sbjct: 37  SIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDA 96

Query: 78  EEVNVKKKSKKALGRILLKGDNITLMMNTGK 109
           EEVNVKKKSKKALGRILLKGDNITLMMNTGK
Sbjct: 97  EEVNVKKKSKKALGRILLKGDNITLMMNTGK 127

[Close]
BLAST of CmoCh10G004510 vs. NCBI nr
Match: OIS97104.1 (hypothetical protein A4A49_04200 [Nicotiana attenuata])

HSP 1 Score: 173.7 bits (439), Expect = 8.6e-40
Identity = 92/110 (83.64%), Postives = 98/110 (89.09%), Query Frame = 0 

Query: 1   MGGLH--FVSKILLTAKTNSVAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR 60
           +GGL     S++    +T  +AMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR
Sbjct: 161 IGGLRGDISSELYFVGETGVLAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR 220

Query: 61  IEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNTGK 109
           IEGRIIGFDEYMNLVLDDAEEVNVKKKS+K LGRILLKGDNITLMMNTGK
Sbjct: 221 IEGRIIGFDEYMNLVLDDAEEVNVKKKSRKQLGRILLKGDNITLMMNTGK 270

[Close]
BLAST of CmoCh10G004510 vs. NCBI nr
Match: XP_022921760.1 (small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita moschata] >XP_022988524.1 small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita maxima] >XP_023516210.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >KAG6589730.1 Small nuclear ribonucleoprotein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.4 bits (433), Expect = 4.3e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 21  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 80
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 81  NVKKKSKKALGRILLKGDNITLMMNTGK 109
           NVKKKSKKALGRILLKGDNITLMMNTGK
Sbjct: 61  NVKKKSKKALGRILLKGDNITLMMNTGK 88

[Close]
BLAST of CmoCh10G004510 vs. NCBI nr
Match: XP_038880617.1 (small nuclear ribonucleoprotein E-like isoform X2 [Benincasa hispida])

HSP 1 Score: 171.4 bits (433), Expect = 4.3e-39
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 18  SVAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDA 77
           S+AMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDA
Sbjct: 37  SIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDA 96

Query: 78  EEVNVKKKSKKALGRILLKGDNITLMMNT 107
           EEVNVKKKSKKALGRILLKGDNITLMMNT
Sbjct: 97  EEVNVKKKSKKALGRILLKGDNITLMMNT 125

[Close]
BLAST of CmoCh10G004510 vs. NCBI nr
Match: XP_022932078.1 (small nuclear ribonucleoprotein E-like [Cucurbita moschata] >XP_022972899.1 small nuclear ribonucleoprotein E-like [Cucurbita maxima] >XP_023520877.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >XP_023520878.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >KAG6607609.1 Small nuclear ribonucleoprotein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170.2 bits (430), Expect = 9.5e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 21  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 80
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 81  NVKKKSKKALGRILLKGDNITLMMNTGK 109
           NVKKKSKK+LGRILLKGDNITLMMNTGK
Sbjct: 61  NVKKKSKKSLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of CmoCh10G004510 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-39
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 21  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 80
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 81  NVKKKSKKALGRILLKGDNITLMMNTGK 109
           ++KK ++K LGRILLKGDNITLMMNTGK
Sbjct: 61  SIKKNTRKPLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of CmoCh10G004510 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-39
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 21  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 80
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 81  NVKKKSKKALGRILLKGDNITLMMNTGK 109
           ++KKK++K LGRILLKGDNITLMMN GK
Sbjct: 61  SIKKKTRKPLGRILLKGDNITLMMNAGK 88

[Close]
BLAST of CmoCh10G004510 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 127.1 bits (318), Expect = 8.6e-30
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 21 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 80
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 81 NVKKKSKKALG 92
          ++KK ++K LG
Sbjct: 61 SIKKNTRKPLG 71

[Close]
BLAST of CmoCh10G004510 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.9e-05
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 33  PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKA--L 92
           P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + ++   L
Sbjct: 10  PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 69

Query: 93  GRILLKGDNITLMMNTG 108
            +ILL G+NI +++  G
Sbjct: 70  DQILLNGNNIAILVPGG 82

The following BLAST results are available for this feature:
BLAST of CmoCh10G004510 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4FUI27.8e-2871.60Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1[more]
P623037.8e-2871.60Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1[more]
P623047.8e-2871.60Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1[more]
P623057.8e-2871.60Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1[more]
A1XQR97.8e-2871.60Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1[more]
BLAST of CmoCh10G004510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1J6IPM54.1e-4083.64Sm protein E OS=Nicotiana attenuata OX=49451 GN=A4A49_04200 PE=3 SV=1[more]
A0A6J1JLU42.1e-39100.00Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111485738 PE... [more]
A0A6J1E6Q32.1e-39100.00Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111429915 ... [more]
A0A6J1ICX74.6e-3998.86Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111471407 PE... [more]
A0A6J1F0M24.6e-3998.86Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111438400 ... [more]
BLAST of CmoCh10G004510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880616.12.3e-4098.90small nuclear ribonucleoprotein E-like isoform X1 [Benincasa hispida][more]
OIS97104.18.6e-4083.64hypothetical protein A4A49_04200 [Nicotiana attenuata][more]
XP_022921760.14.3e-39100.00small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita moschata] >XP_02298... [more]
XP_038880617.14.3e-3998.88small nuclear ribonucleoprotein E-like isoform X2 [Benincasa hispida][more]
XP_022932078.19.5e-3998.86small nuclear ribonucleoprotein E-like [Cucurbita moschata] >XP_022972899.1 smal... [more]
BLAST of CmoCh10G004510 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G18740.11.6e-3990.91Small nuclear ribonucleoprotein family protein [more]
AT4G30330.11.6e-3990.91Small nuclear ribonucleoprotein family protein [more]
AT2G18740.28.6e-3088.73Small nuclear ribonucleoprotein family protein [more]
AT5G48870.11.9e-0535.06Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 39..105
e-value: 1.5E-17
score: 74.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 40..103
e-value: 7.0E-18
score: 64.1
NoneNo IPR availableGENE3D2.30.30.100coord: 21..106
e-value: 1.8E-41
score: 141.8
NoneNo IPR availablePANTHERPTHR11193:SF10SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 21..107
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 21..107
IPR027078Small nuclear ribonucleoprotein ECDDcd01718Sm_Ecoord: 27..105
e-value: 1.96676E-52
score: 157.33
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 32..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G004510.1CmoCh10G004510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding