
CmoCh10G004460 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATGCATATCTGCTCATCCCCATCGCCATTATTCTCACCCTCCTAAGCTCATCCGGCCCCGCCGCCGCAGCTCCGGTGAGGTCCGACAGAGTCCTGCAAAAGCAATTCCTCGGCCCTCACAATGCCGCCAGATACGCTCTCCGATTGGCCCCCTTGGTTTGGGACAACAAACTGGCTCGCTACGCACAGTGGTACGCGAACAAGCGGCGAGGGGATTGTGCCCTCCGTCACTCTGGCGGACCTTACGGTGAAAACATCTTCTGGGGCAGCGGCAATGCTTGGAATCCGGCACAGGCTGTGTCGGATTGGGTGTCGGAGCGGAAGTGGTACAGTTATTGGGCCAATTCTTGCGTGGAGGGTGAACTGCGTGGGCATTATACTCAAATTGTGTGGCGGTCGACACGGCGGATTGGGTGCGCTAGAGTCACCTGCAACGATGGTAAAGGCGTCTTCATCACTTGCAACTATGACCCTCCTGGTAATTACATCGGGGAGAGACCTTATTAAACGCCATTAATTATCTTCATCATGGGTAAAAGTTCTGTTGCTCATGTCCTTGTCAAATTCACATGTAATTGATATGTGCTGTATCCCCAATAAATATATATATATATATCTTTCATTTTAATTTCCGTACGGAATAATAAAATTTTGAAATAAAACTCTATTAGGAAGAGATTATGAGTTAATAATAAACAATACAATATTGTAAATGATCATAGGCATATTAGATTTACAATATGTTTGTAATCTTGGGGAATAATTGTGTATTATAATGATTCCATTGATTTCAGTCTTAATTATTGTTGCCAAAAATTAAATGTAGAGCATAGGGTAAAAAAGATATTGAGGTAAGAATAATAGATTTATAGGAAGCAGTGGCGGTAGAATTATGAGTGTTCAGACGGTCAGAGATTCTGAACGTGGAAACATGCATCTGTCGCCGCTCATTTAAATTCCCAACTACTTTAGGCCTATGTTCTGGACGGTGGGCTCCACAACCCACTCGGATTCTTTTTCAGATGGGCTTTAGTTGGGCCCAACACTGAGTCCAAGTCAGGCCCATGTCAATAATAGAGAGTTTTTTTTTTTATCAACATTTATTCAATTTTAATATGAACGATTTATTTCATTATTATTCTTTGTCATTATTGACTATTACCATTATAATTGATTGATTTTATTATTACAGCAAAAGTAAATGTTTAAATACGCTTAAATAAAAGAGTAAATGTATTTATCTAAAGGGTAAGATTTCACCTTGGTTTTAGAGATAACGAAGTTTTAACTCAGTGGCGAAACTTCTCACTAGGGCGTTTTAAAAACAAGCGAAACCGAGAGGGATATAGCTATTACCGGCCGAAAGTTCCATGTGAATGGTAACTCAAACTTGGGCGGTGGTTGCTTTGACACTCCGTAGATGGTTTTGGTTGTTTGTTTGCAGGTGCACACCAGATGGTTGAGAAGTGTTGTGGGAGAGAACTTGGGGCGTAA ATGCATGCATATCTGCTCATCCCCATCGCCATTATTCTCACCCTCCTAAGCTCATCCGGCCCCGCCGCCGCAGCTCCGGTGAGGTCCGACAGAGTCCTGCAAAAGCAATTCCTCGGCCCTCACAATGCCGCCAGATACGCTCTCCGATTGGCCCCCTTGGTTTGGGACAACAAACTGGCTCGCTACGCACAGTGGTACGCGAACAAGCGGCGAGGGGATTGTGCCCTCCGTCACTCTGGCGGACCTTACGGTGAAAACATCTTCTGGGGCAGCGGCAATGCTTGGAATCCGGCACAGGCTGTGTCGGATTGGGTGTCGGAGCGGAAGTGGTACAGTTATTGGGCCAATTCTTGCGTGGAGGGTGAACTGCGTGGGCATTATACTCAAATTGTGTGGCGGTCGACACGGCGGATTGGGTGCGCTAGAGTCACCTGCAACGATGGTAAAGGCGTCTTCATCACTTGCAACTATGACCCTCCTGGTGCACACCAGATGGTTGAGAAGTGTTGTGGGAGAGAACTTGGGGCGTAA ATGCATGCATATCTGCTCATCCCCATCGCCATTATTCTCACCCTCCTAAGCTCATCCGGCCCCGCCGCCGCAGCTCCGGTGAGGTCCGACAGAGTCCTGCAAAAGCAATTCCTCGGCCCTCACAATGCCGCCAGATACGCTCTCCGATTGGCCCCCTTGGTTTGGGACAACAAACTGGCTCGCTACGCACAGTGGTACGCGAACAAGCGGCGAGGGGATTGTGCCCTCCGTCACTCTGGCGGACCTTACGGTGAAAACATCTTCTGGGGCAGCGGCAATGCTTGGAATCCGGCACAGGCTGTGTCGGATTGGGTGTCGGAGCGGAAGTGGTACAGTTATTGGGCCAATTCTTGCGTGGAGGGTGAACTGCGTGGGCATTATACTCAAATTGTGTGGCGGTCGACACGGCGGATTGGGTGCGCTAGAGTCACCTGCAACGATGGTAAAGGCGTCTTCATCACTTGCAACTATGACCCTCCTGGTGCACACCAGATGGTTGAGAAGTGTTGTGGGAGAGAACTTGGGGCGTAA MHAYLLIPIAIILTLLSSSGPAAAAPVRSDRVLQKQFLGPHNAARYALRLAPLVWDNKLARYAQWYANKRRGDCALRHSGGPYGENIFWGSGNAWNPAQAVSDWVSERKWYSYWANSCVEGELRGHYTQIVWRSTRRIGCARVTCNDGKGVFITCNYDPPGAHQMVEKCCGRELGA Homology
BLAST of CmoCh10G004460 vs. ExPASy Swiss-Prot
Match: Q40374 (Pathogenesis-related protein PR-1 OS=Medicago truncatula OX=3880 GN=PR-1 PE=2 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 2.7e-54 Identity = 94/153 (61.44%), Postives = 114/153 (74.51%), Query Frame = 0
BLAST of CmoCh10G004460 vs. ExPASy Swiss-Prot
Match: Q00008 (Pathogenesis-related protein PRMS OS=Zea mays OX=4577 GN=PRMS PE=2 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 2.4e-42 Identity = 79/154 (51.30%), Postives = 103/154 (66.88%), Query Frame = 0
BLAST of CmoCh10G004460 vs. ExPASy Swiss-Prot
Match: P35793 (Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare OX=4513 PE=2 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 1.2e-41 Identity = 80/155 (51.61%), Postives = 106/155 (68.39%), Query Frame = 0
BLAST of CmoCh10G004460 vs. ExPASy Swiss-Prot
Match: P35792 (Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.5e-41 Identity = 79/154 (51.30%), Postives = 107/154 (69.48%), Query Frame = 0
BLAST of CmoCh10G004460 vs. ExPASy Swiss-Prot
Match: Q05968 (Pathogenesis-related protein 1 OS=Hordeum vulgare OX=4513 PE=2 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 2.0e-41 Identity = 79/154 (51.30%), Postives = 106/154 (68.83%), Query Frame = 0
BLAST of CmoCh10G004460 vs. ExPASy TrEMBL
Match: A0A6J1E2D3 (pathogenesis-related protein PR-1-like OS=Cucurbita moschata OX=3662 GN=LOC111429942 PE=4 SV=1) HSP 1 Score: 348.2 bits (892), Expect = 2.0e-92 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
BLAST of CmoCh10G004460 vs. ExPASy TrEMBL
Match: A0A6J1JD89 (pathogenesis-related protein PR-1-like OS=Cucurbita maxima OX=3661 GN=LOC111485737 PE=4 SV=1) HSP 1 Score: 345.1 bits (884), Expect = 1.7e-91 Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0
BLAST of CmoCh10G004460 vs. ExPASy TrEMBL
Match: A0A5D3CE49 (Pathogenesis-related protein PR-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00870 PE=4 SV=1) HSP 1 Score: 310.1 bits (793), Expect = 6.0e-81 Identity = 143/163 (87.73%), Postives = 152/163 (93.25%), Query Frame = 0
BLAST of CmoCh10G004460 vs. ExPASy TrEMBL
Match: A0A1S3BWR0 (pathogenesis-related protein PR-1 OS=Cucumis melo OX=3656 GN=LOC103494292 PE=4 SV=1) HSP 1 Score: 310.1 bits (793), Expect = 6.0e-81 Identity = 143/163 (87.73%), Postives = 152/163 (93.25%), Query Frame = 0
BLAST of CmoCh10G004460 vs. ExPASy TrEMBL
Match: A0A6J1ES44 (pathogenesis-related protein PR-1-like OS=Cucurbita moschata OX=3662 GN=LOC111436010 PE=4 SV=1) HSP 1 Score: 300.4 bits (768), Expect = 4.8e-78 Identity = 141/161 (87.58%), Postives = 148/161 (91.93%), Query Frame = 0
BLAST of CmoCh10G004460 vs. NCBI nr
Match: XP_022921796.1 (pathogenesis-related protein PR-1-like [Cucurbita moschata]) HSP 1 Score: 348.2 bits (892), Expect = 4.1e-92 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
BLAST of CmoCh10G004460 vs. NCBI nr
Match: XP_022988522.1 (pathogenesis-related protein PR-1-like [Cucurbita maxima]) HSP 1 Score: 345.1 bits (884), Expect = 3.5e-91 Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0
BLAST of CmoCh10G004460 vs. NCBI nr
Match: XP_023516778.1 (pathogenesis-related protein PR-1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86 Identity = 154/161 (95.65%), Postives = 155/161 (96.27%), Query Frame = 0
BLAST of CmoCh10G004460 vs. NCBI nr
Match: XP_008453637.1 (PREDICTED: pathogenesis-related protein PR-1 [Cucumis melo] >KAA0056235.1 pathogenesis-related protein PR-1 [Cucumis melo var. makuwa] >TYK09488.1 pathogenesis-related protein PR-1 [Cucumis melo var. makuwa]) HSP 1 Score: 310.1 bits (793), Expect = 1.2e-80 Identity = 143/163 (87.73%), Postives = 152/163 (93.25%), Query Frame = 0
BLAST of CmoCh10G004460 vs. NCBI nr
Match: XP_022929438.1 (pathogenesis-related protein PR-1-like [Cucurbita moschata] >XP_023529539.1 pathogenesis-related protein PR-1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 300.4 bits (768), Expect = 9.9e-78 Identity = 141/161 (87.58%), Postives = 148/161 (91.93%), Query Frame = 0
BLAST of CmoCh10G004460 vs. TAIR 10
Match: AT4G30320.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein ) HSP 1 Score: 204.1 bits (518), Expect = 9.0e-53 Identity = 88/128 (68.75%), Postives = 104/128 (81.25%), Query Frame = 0
BLAST of CmoCh10G004460 vs. TAIR 10
Match: AT5G57625.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein ) HSP 1 Score: 185.3 bits (469), Expect = 4.3e-47 Identity = 78/129 (60.47%), Postives = 96/129 (74.42%), Query Frame = 0
BLAST of CmoCh10G004460 vs. TAIR 10
Match: AT4G25790.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein ) HSP 1 Score: 180.3 bits (456), Expect = 1.4e-45 Identity = 78/128 (60.94%), Postives = 93/128 (72.66%), Query Frame = 0
BLAST of CmoCh10G004460 vs. TAIR 10
Match: AT4G25780.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein ) HSP 1 Score: 169.5 bits (428), Expect = 2.5e-42 Identity = 77/130 (59.23%), Postives = 97/130 (74.62%), Query Frame = 0
BLAST of CmoCh10G004460 vs. TAIR 10
Match: AT4G31470.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein ) HSP 1 Score: 154.8 bits (390), Expect = 6.3e-38 Identity = 80/168 (47.62%), Postives = 95/168 (56.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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