CmoCh10G004400 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G004400
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionF-box domain-containing protein
LocationCmo_Chr10: 1996288 .. 1996914 (-)
RNA-Seq ExpressionCmoCh10G004400
SyntenyCmoCh10G004400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGGCCGGTGACAGGGTAAATTTCTTATTTCATATACCCTTTCTTAATGTGGTTTGATTGATTAGGATCAAGGATTCCCAACACTTTTTTGTTGCTTTCAAAAGTTTCCCATTACTGTATGAAAGATGGTTCGGTGGCTAATGAATAATCCTTGTTATTTTTAGTTGGTTTTTAATGCATATAAATATAACTGTTCTGATTCTTATGCGCCTATTTGCTGACATCTTCAAGTAAATATTACCTTATTTGTTGCCATTCAGCTGTTTGAACTTCCATTCATTTGTCATATCAATGTTTCCATGTTTGAACTTTATGTCATCTCTTCTATTTTCTCTTCAATTTATATTTTTTTCTCTTATTTTCCCTCTCTAGTTCATTACTCTTTTATAACTCTTCTTCCATTTATTGCCTCGAGCTCTTGCGAGAGCCATTGGTTAGCTGTGGAAGAAGCTGGACCAGACCAGAAGACCAAACGCAAGCGCTGTCGGCATTGAAGTTTCTAAAGGAGGTTTCAAATGGGGCTTGGGTCCAGTCTGTTTTCACAAACCCACCTCTCGTGGCCCAATCATCAGCATTCCACAAGCTGGAGTATATTCTCATTGGTTGCTTCTTTGGAAATTGA

mRNA sequence

ATGGGTTGGCCGGTGACAGGGATCAAGGATTCCCAACACTTTTTTGTTGCTTTCAAAAGTTTCCCATTACTTTGGTTTTTAATGCATATAAATATAACTGTTCTGATTCTTATGCGCCTATTTGCTGACATCTTCAATTCATTACTCTTTTATAACTCTTCTTCCATTTATTGCCTCGAGCTCTTGCGAGAGCCATTGGTTAGCTGTGGAAGAAGCTGGACCAGACCAGAAGACCAAACGCAAGCGCTGTCGGCATTGAAGTTTCTAAAGGAGGTTTCAAATGGGGCTTGGGTCCAGTCTGTTTTCACAAACCCACCTCTCGTGGCCCAATCATCAGCATTCCACAAGCTGGAGTATATTCTCATTGGTTGCTTCTTTGGAAATTGA

Coding sequence (CDS)

ATGGGTTGGCCGGTGACAGGGATCAAGGATTCCCAACACTTTTTTGTTGCTTTCAAAAGTTTCCCATTACTTTGGTTTTTAATGCATATAAATATAACTGTTCTGATTCTTATGCGCCTATTTGCTGACATCTTCAATTCATTACTCTTTTATAACTCTTCTTCCATTTATTGCCTCGAGCTCTTGCGAGAGCCATTGGTTAGCTGTGGAAGAAGCTGGACCAGACCAGAAGACCAAACGCAAGCGCTGTCGGCATTGAAGTTTCTAAAGGAGGTTTCAAATGGGGCTTGGGTCCAGTCTGTTTTCACAAACCCACCTCTCGTGGCCCAATCATCAGCATTCCACAAGCTGGAGTATATTCTCATTGGTTGCTTCTTTGGAAATTGA

Protein sequence

MGWPVTGIKDSQHFFVAFKSFPLLWFLMHINITVLILMRLFADIFNSLLFYNSSSIYCLELLREPLVSCGRSWTRPEDQTQALSALKFLKEVSNGAWVQSVFTNPPLVAQSSAFHKLEYILIGCFFGN
Homology
BLAST of CmoCh10G004400 vs. ExPASy TrEMBL
Match: A0A445ENG9 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g001490 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.7e-11
Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 76  PEDQTQALSALKFLKEVSNGAWVQSVFTNPPLVAQSSAFHKLEYILIGCFFG 128
           P D  QA SALKFL E  NGA+VQSVFT+PPLVAQSSAFHKLEYILIG  FG
Sbjct: 41  PLDHMQA-SALKFLYEAVNGAFVQSVFTSPPLVAQSSAFHKLEYILIGWLFG 91

BLAST of CmoCh10G004400 vs. ExPASy TrEMBL
Match: A0A392N3L2 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-09
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0

Query: 77  EDQTQALSALKFLKEVSNGAWVQSVFTNPPLVAQSSAFHKLEYILIGCFFG 128
           E QTQA  ALKFL    NGAW QSVFT+PPLVAQ SAFH+LEYIL+  FFG
Sbjct: 12  EVQTQA-CALKFLYVAVNGAWAQSVFTSPPLVAQFSAFHRLEYILMAWFFG 61

BLAST of CmoCh10G004400 vs. ExPASy TrEMBL
Match: A0A5A7Q9Z0 (Methionine aminopeptidase 1B OS=Striga asiatica OX=4170 GN=STAS_18504 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 52  NSSSIYCLELL----REPLVS--CGRSWTRPEDQTQALSALKFLKEVSNGAWVQSVFTNP 111
           N +  YC EL      + L    C +    PE      +ALKF+ E   GAW+QSVFT+P
Sbjct: 45  NLALFYCTELKIDCENQELADEFCEQELVAPEQ----ANALKFVYEAVKGAWLQSVFTSP 104

Query: 112 PLVAQSSAFHKLEYILIGCFFG 128
           PLVAQSSAF +LEY  +G  FG
Sbjct: 105 PLVAQSSAFQRLEYTHMGWLFG 122

BLAST of CmoCh10G004400 vs. ExPASy TrEMBL
Match: A0A7J7HWZ4 (F-box domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_003839 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07
Identity = 36/52 (69.23%), Postives = 37/52 (71.15%), Query Frame = 0

Query: 76  PEDQTQALSALKFLKEVSNGAWVQSVFTNPPLVAQSSAFHKLEYILIGCFFG 128
           PE  T A SALKF  EV  GA VQSV  +PPLVAQSSAF  LEY LIG FFG
Sbjct: 162 PEGHTHA-SALKFAYEVVKGACVQSVLMSPPLVAQSSAFQMLEYSLIGWFFG 212

BLAST of CmoCh10G004400 vs. ExPASy TrEMBL
Match: C0PDK9 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 33/53 (62.26%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 76  PEDQTQALSALKFLKEVSNGAWVQSVFTNPPLVAQSSAFHKLEYILIGCFFGN 129
           P  QTQA SALK  KE + GA  QS  T PP VAQSSAFH+L Y L+GC  GN
Sbjct: 32  PPSQTQA-SALKPRKEATKGALDQSALTRPPCVAQSSAFHRLAYSLMGCVLGN 83

BLAST of CmoCh10G004400 vs. NCBI nr
Match: RYR30295.1 (hypothetical protein Ahy_B01g055097 isoform D [Arachis hypogaea] >RYR77000.1 hypothetical protein Ahy_A01g001490 isoform E [Arachis hypogaea])

HSP 1 Score: 77.8 bits (190), Expect = 7.6e-11
Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 76  PEDQTQALSALKFLKEVSNGAWVQSVFTNPPLVAQSSAFHKLEYILIGCFFG 128
           P D  QA SALKFL E  NGA+VQSVFT+PPLVAQSSAFHKLEYILIG  FG
Sbjct: 41  PLDHMQA-SALKFLYEAVNGAFVQSVFTSPPLVAQSSAFHKLEYILIGWLFG 91

BLAST of CmoCh10G004400 vs. NCBI nr
Match: MCH93084.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 71.6 bits (174), Expect = 5.4e-09
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0

Query: 77  EDQTQALSALKFLKEVSNGAWVQSVFTNPPLVAQSSAFHKLEYILIGCFFG 128
           E QTQA  ALKFL    NGAW QSVFT+PPLVAQ SAFH+LEYIL+  FFG
Sbjct: 12  EVQTQA-CALKFLYVAVNGAWAQSVFTSPPLVAQFSAFHRLEYILMAWFFG 61

BLAST of CmoCh10G004400 vs. NCBI nr
Match: GER41768.1 (methionine aminopeptidase 1B [Striga asiatica])

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-07
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 52  NSSSIYCLELL----REPLVS--CGRSWTRPEDQTQALSALKFLKEVSNGAWVQSVFTNP 111
           N +  YC EL      + L    C +    PE      +ALKF+ E   GAW+QSVFT+P
Sbjct: 45  NLALFYCTELKIDCENQELADEFCEQELVAPEQ----ANALKFVYEAVKGAWLQSVFTSP 104

Query: 112 PLVAQSSAFHKLEYILIGCFFG 128
           PLVAQSSAF +LEY  +G  FG
Sbjct: 105 PLVAQSSAFQRLEYTHMGWLFG 122

BLAST of CmoCh10G004400 vs. NCBI nr
Match: KAF5956614.1 (hypothetical protein HYC85_003839 [Camellia sinensis])

HSP 1 Score: 64.7 bits (156), Expect = 6.6e-07
Identity = 36/52 (69.23%), Postives = 37/52 (71.15%), Query Frame = 0

Query: 76  PEDQTQALSALKFLKEVSNGAWVQSVFTNPPLVAQSSAFHKLEYILIGCFFG 128
           PE  T A SALKF  EV  GA VQSV  +PPLVAQSSAF  LEY LIG FFG
Sbjct: 162 PEGHTHA-SALKFAYEVVKGACVQSVLMSPPLVAQSSAFQMLEYSLIGWFFG 212

BLAST of CmoCh10G004400 vs. NCBI nr
Match: ACN33275.1 (unknown [Zea mays])

HSP 1 Score: 62.8 bits (151), Expect = 2.5e-06
Identity = 33/53 (62.26%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 76  PEDQTQALSALKFLKEVSNGAWVQSVFTNPPLVAQSSAFHKLEYILIGCFFGN 129
           P  QTQA SALK  KE + GA  QS  T PP VAQSSAFH+L Y L+GC  GN
Sbjct: 32  PPSQTQA-SALKPRKEATKGALDQSALTRPPCVAQSSAFHRLAYSLMGCVLGN 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A445ENG93.7e-1178.85Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g001490 PE=4 SV=1[more]
A0A392N3L22.6e-0972.55Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1[more]
A0A5A7Q9Z01.9e-0746.34Methionine aminopeptidase 1B OS=Striga asiatica OX=4170 GN=STAS_18504 PE=4 SV=1[more]
A0A7J7HWZ43.2e-0769.23F-box domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_003839 PE=... [more]
C0PDK91.2e-0662.26Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
RYR30295.17.6e-1178.85hypothetical protein Ahy_B01g055097 isoform D [Arachis hypogaea] >RYR77000.1 hyp... [more]
MCH93084.15.4e-0972.55hypothetical protein [Trifolium medium][more]
GER41768.13.9e-0746.34methionine aminopeptidase 1B [Striga asiatica][more]
KAF5956614.16.6e-0769.23hypothetical protein HYC85_003839 [Camellia sinensis][more]
ACN33275.12.5e-0662.26unknown [Zea mays][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G004400.1CmoCh10G004400.1mRNA