CmoCh10G004310 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G004310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DUF761 domain-containing protein
Location	Cmo_Chr10: 1967465 .. 1967845 (-)
RNA-Seq Expression	CmoCh10G004310
Synteny	CmoCh10G004310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGACTAGCTTGCTGGGTCGGCTGAGGAAGGCGGTGGAGAAGCTGAAATTTGTGATGAAGTTCAACATCCAAAGCTGGCGTTTGGCGGCGATGTTGGGGAGGACTTCGTCGAGAAACCTCCGGCTTAGCTTCAATGAAAGCCCGGGGTTGAAGGTCTGTAAAGAGGATATTATAGAGTCGTCTGAACACTCGAATTCTTCATCTCGAAGAGGACTACAAAGGACGCCAAGCTATGCTTCTGAAGACGATGTGGACAAGCGAGCGGAGGCTTTTATAGCGAATTTCTATCGCCAGCTTAGGATCGAGCGCCAGGTTTCGCTTGAGCTTCGATACTGCCGTGGGAGTAGCTCTAAGCAGCTTATAGTTTCTCCTTGA

mRNA sequence

ATGGCGGCGACTAGCTTGCTGGGTCGGCTGAGGAAGGCGGTGGAGAAGCTGAAATTTGTGATGAAGTTCAACATCCAAAGCTGGCGTTTGGCGGCGATGTTGGGGAGGACTTCGTCGAGAAACCTCCGGCTTAGCTTCAATGAAAGCCCGGGGTTGAAGGTCTGTAAAGAGGATATTATAGAGTCGTCTGAACACTCGAATTCTTCATCTCGAAGAGGACTACAAAGGACGCCAAGCTATGCTTCTGAAGACGATGTGGACAAGCGAGCGGAGGCTTTTATAGCGAATTTCTATCGCCAGCTTAGGATCGAGCGCCAGGTTTCGCTTGAGCTTCGATACTGCCGTGGGAGTAGCTCTAAGCAGCTTATAGTTTCTCCTTGA

Coding sequence (CDS)

ATGGCGGCGACTAGCTTGCTGGGTCGGCTGAGGAAGGCGGTGGAGAAGCTGAAATTTGTGATGAAGTTCAACATCCAAAGCTGGCGTTTGGCGGCGATGTTGGGGAGGACTTCGTCGAGAAACCTCCGGCTTAGCTTCAATGAAAGCCCGGGGTTGAAGGTCTGTAAAGAGGATATTATAGAGTCGTCTGAACACTCGAATTCTTCATCTCGAAGAGGACTACAAAGGACGCCAAGCTATGCTTCTGAAGACGATGTGGACAAGCGAGCGGAGGCTTTTATAGCGAATTTCTATCGCCAGCTTAGGATCGAGCGCCAGGTTTCGCTTGAGCTTCGATACTGCCGTGGGAGTAGCTCTAAGCAGCTTATAGTTTCTCCTTGA

Protein sequence

MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDIIESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSKQLIVSP

Homology

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BLAST of CmoCh10G004310 vs. ExPASy TrEMBL
Match: A0A6J1E1K7 (uncharacterized protein LOC111429947 OS=Cucurbita moschata OX=3662 GN=LOC111429947 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.2e-60
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60
           MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII
Sbjct: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK 120
           ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK
Sbjct: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK 120

Query: 121 QLIVSP 127
           QLIVSP
Sbjct: 121 QLIVSP 126

[Close]

BLAST of CmoCh10G004310 vs. ExPASy TrEMBL
Match: A0A6J1JIQ4 (uncharacterized protein LOC111484948 OS=Cucurbita maxima OX=3661 GN=LOC111484948 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.5e-57
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60
           MAATSLLGRLR AVEKLKF+MKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII
Sbjct: 1   MAATSLLGRLRNAVEKLKFMMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK 120
           ESSEHSNSSSR GLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLEL+YCRG+SSK
Sbjct: 61  ESSEHSNSSSRGGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELQYCRGNSSK 120

Query: 121 QLIVSP 127
           QLIVSP
Sbjct: 121 QLIVSP 126

[Close]

BLAST of CmoCh10G004310 vs. ExPASy TrEMBL
Match: A0A0A0LUK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423060 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.3e-42
Identity = 95/118 (80.51%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60
           M A SLLGRLRKAV+K++F+M F+IQ WRLAAMLGRTSSRNLRLSF E PGLK C EDII
Sbjct: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60

Query: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSS 119
              E S SSS RGLQRT SYASEDDVD RAEAFIANFYRQLRIERQVSLEL+YCRG+S
Sbjct: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNS 118

[Close]

BLAST of CmoCh10G004310 vs. ExPASy TrEMBL
Match: A0A6J1C4F5 (uncharacterized protein LOC111007290 OS=Momordica charantia OX=3673 GN=LOC111007290 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.4e-41
Identity = 93/127 (73.23%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60
           MA +SLLGRLRKAV K++F++ F+IQSWRLAAM+GRTSSRNLRLSFNE PGLK C EDI 
Sbjct: 1   MAGSSLLGRLRKAVRKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTEDIT 60

Query: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSS-S 120
           ESS+H +     GLQRT SYASEDDVDKRA+ FIANFYRQL+IERQVSLEL+YCRG+S +
Sbjct: 61  ESSQHYSP----GLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFN 120

Query: 121 KQLIVSP 127
             L++SP
Sbjct: 121 NHLLISP 123

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BLAST of CmoCh10G004310 vs. ExPASy TrEMBL
Match: A0A5D3CK96 (DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00610 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.4e-39
Identity = 95/119 (79.83%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLK-VCKEDI 60
           M A SLLGRLRKAV+K+KF+M F+IQ WRLAAMLGRTSSRNLRLSFNE PGLK  C EDI
Sbjct: 1   MEAISLLGRLRKAVKKIKFMMNFSIQRWRLAAMLGRTSSRNLRLSFNERPGLKAACSEDI 60

Query: 61  IESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSS 119
           I   E  +SSS RGLQRT SYASEDDVD RAEAFIANFYRQLRIERQVSLEL+YCR +S
Sbjct: 61  IMEEEPVSSSS-RGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRRNS 118

[Close]

BLAST of CmoCh10G004310 vs. NCBI nr
Match: XP_022921804.1 (uncharacterized protein LOC111429947 [Cucurbita moschata])

HSP 1 Score: 240.4 bits (612), Expect = 8.7e-60
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60
           MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII
Sbjct: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK 120
           ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK
Sbjct: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK 120

Query: 121 QLIVSP 127
           QLIVSP
Sbjct: 121 QLIVSP 126

[Close]

BLAST of CmoCh10G004310 vs. NCBI nr
Match: KAG7023392.1 (hypothetical protein SDJN02_14417, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.7 bits (605), Expect = 5.6e-59
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60
           MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII
Sbjct: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK 120
           ESSEHSNSSSR GLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK
Sbjct: 61  ESSEHSNSSSRGGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK 120

Query: 121 QLIVSP 127
           QLIVSP
Sbjct: 121 QLIVSP 126

[Close]

BLAST of CmoCh10G004310 vs. NCBI nr
Match: XP_022987374.1 (uncharacterized protein LOC111484948 [Cucurbita maxima])

HSP 1 Score: 231.9 bits (590), Expect = 3.1e-57
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60
           MAATSLLGRLR AVEKLKF+MKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII
Sbjct: 1   MAATSLLGRLRNAVEKLKFMMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK 120
           ESSEHSNSSSR GLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLEL+YCRG+SSK
Sbjct: 61  ESSEHSNSSSRGGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELQYCRGNSSK 120

Query: 121 QLIVSP 127
           QLIVSP
Sbjct: 121 QLIVSP 126

[Close]

BLAST of CmoCh10G004310 vs. NCBI nr
Match: XP_023515447.1 (uncharacterized protein LOC111779603 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.2 bits (583), Expect = 2.0e-56
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60
           MAATSLLGRLRKAVEKLKF+MKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII
Sbjct: 1   MAATSLLGRLRKAVEKLKFMMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK 120
           ESSEHSNSSS RGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRG+S K
Sbjct: 61  ESSEHSNSSS-RGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGNSFK 120

Query: 121 QLIVSP 127
           QLIVSP
Sbjct: 121 QLIVSP 125

[Close]

BLAST of CmoCh10G004310 vs. NCBI nr
Match: KAG6589712.1 (hypothetical protein SDJN03_15135, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.4 bits (503), Expect = 3.8e-47
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60
           MAAT+LLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII
Sbjct: 1   MAATNLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQ 107
           ESSEHSNSSSR GLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQ
Sbjct: 61  ESSEHSNSSSRGGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQ 106

[Close]

BLAST of CmoCh10G004310 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-25
Identity = 68/126 (53.97%), Postives = 86/126 (68.25%), Query Frame = 0


Query: 5   SLLGRLRKAVEKLKFVMKFNIQS-WRLAAMLG-RTSSRNLRLSFNESPGLKVCKEDIIES 64
           SLL RLR+AV K+KFV+ F I S W L  MLG  +SS +LRLSFN+ PGL        E+
Sbjct: 8   SLLNRLRQAVNKVKFVLSFKINSLWGLVPMLGSSSSSSSLRLSFNDRPGLTAA---FTEN 67

Query: 65  SEHSNSSSRRGLQRTPSY--ASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK 124
              S  SSR  L RT SY  +S++D+D +AE FIANFYRQL+IERQ+SLEL+YC+G++  
Sbjct: 68  EPDSTGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQS 127

Query: 125 QLIVSP 127
               SP
Sbjct: 128 FNYRSP 130

The following BLAST results are available for this feature:

BLAST of CmoCh10G004310 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh10G004310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1K7	4.2e-60	100.00	uncharacterized protein LOC111429947 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A6J1JIQ4	1.5e-57	96.03	uncharacterized protein LOC111484948 OS=Cucurbita maxima OX=3661 GN=LOC111484948...	[more]
A0A0A0LUK4	2.3e-42	80.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423060 PE=4 SV=1	[more]
A0A6J1C4F5	3.4e-41	73.23	uncharacterized protein LOC111007290 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A5D3CK96	2.4e-39	79.83	DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of CmoCh10G004310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921804.1	8.7e-60	100.00	uncharacterized protein LOC111429947 [Cucurbita moschata]	[more]
KAG7023392.1	5.6e-59	99.21	hypothetical protein SDJN02_14417, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022987374.1	3.1e-57	96.03	uncharacterized protein LOC111484948 [Cucurbita maxima]	[more]
XP_023515447.1	2.0e-56	96.83	uncharacterized protein LOC111779603 [Cucurbita pepo subsp. pepo]	[more]
KAG6589712.1	3.8e-47	98.11	hypothetical protein SDJN03_15135, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh10G004310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57510.1	1.5e-25	53.97	unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 83..114 e-value: 5.0E-13 score: 48.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..84
None	No IPR available	PANTHER	PTHR33098:SF64	OS08G0448100 PROTEIN	coord: 1..121
None	No IPR available	PANTHER	PTHR33098	COTTON FIBER (DUF761)	coord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G004310.1	CmoCh10G004310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071456	cellular response to hypoxia