Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACGAACACCGTCTTCATCTCTCTGAAAACCCCTTTTCATTACTCCAAGCAAATGAATTATTCGTCCACAAAATCCTCTCGCGAAACTCCTCAGTCGGCCGCTCTGCCCGTCTCCCTGCCTGTCGCCTGCCCGGTCAAATCCCCTTCATTTGGGAAGCACAGCCCGGCCTGCCCAAGGACAAACCCTCTGAAAATCTCCAGCCACCGCCGTCGCCAAACTCCGTCCAAGGCGCCTCGAAAACTCCTCACCAAGTCCCCGAGCAGCAGGAGGCAGCTAAGATTTGGTTTTGGATGAAGCCGAGGAAGAAACTGAGGAATGTGGTTAAGAAAAACGGTGCGTTTGGATCCTCCTCCTCATCGAGACGACATGTCAATCAAGAGAGTGAGTTTTATAGAAAATCAAACGACGAGTCGTCATCGTCTTTGAGTTGTATTTCTCATTCTCTGTCTTCCAGTTCTTCGTCGTCCAATGGCTATGCCCGACGTCGGTCTAAACTCAGTAGCCTGGCCAAAGGGTTCTTACGGTGGGCCTTCTGATTGA
mRNA sequence
ATGGGAAACGAACACCGTCTTCATCTCTCTGAAAACCCCTTTTCATTACTCCAAGCAAATGAATTATTCGTCCACAAAATCCTCTCGCGAAACTCCTCAGTCGGCCGCTCTGCCCGTCTCCCTGCCTGTCGCCTGCCCGGTCAAATCCCCTTCATTTGGGAAGCACAGCCCGGCCTGCCCAAGGACAAACCCTCTGAAAATCTCCAGCCACCGCCGTCGCCAAACTCCGTCCAAGGCGCCTCGAAAACTCCTCACCAAGTCCCCGAGCAGCAGGAGGCAGCTAAGATTTGGTTTTGGATGAAGCCGAGGAAGAAACTGAGGAATGTGGTTAAGAAAAACGGTGCGTTTGGATCCTCCTCCTCATCGAGACGACATGTCAATCAAGAGAGTGAGTTTTATAGAAAATCAAACGACGAGTCGTCATCGTCTTTGAGTTTTCTTCGTCGTCCAATGGCTATGCCCGACGTCGGTCTAAACTCAGTAGCCTGGCCAAAGGGTTCTTACGGTGGGCCTTCTGATTGA
Coding sequence (CDS)
ATGGGAAACGAACACCGTCTTCATCTCTCTGAAAACCCCTTTTCATTACTCCAAGCAAATGAATTATTCGTCCACAAAATCCTCTCGCGAAACTCCTCAGTCGGCCGCTCTGCCCGTCTCCCTGCCTGTCGCCTGCCCGGTCAAATCCCCTTCATTTGGGAAGCACAGCCCGGCCTGCCCAAGGACAAACCCTCTGAAAATCTCCAGCCACCGCCGTCGCCAAACTCCGTCCAAGGCGCCTCGAAAACTCCTCACCAAGTCCCCGAGCAGCAGGAGGCAGCTAAGATTTGGTTTTGGATGAAGCCGAGGAAGAAACTGAGGAATGTGGTTAAGAAAAACGGTGCGTTTGGATCCTCCTCCTCATCGAGACGACATGTCAATCAAGAGAGTGAGTTTTATAGAAAATCAAACGACGAGTCGTCATCGTCTTTGAGTTTTCTTCGTCGTCCAATGGCTATGCCCGACGTCGGTCTAAACTCAGTAGCCTGGCCAAAGGGTTCTTACGGTGGGCCTTCTGATTGA
Protein sequence
MGNEHRLHLSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKDKPSENLQPPPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAFGSSSSSRRHVNQESEFYRKSNDESSSSLSFLRRPMAMPDVGLNSVAWPKGSYGGPSD
Homology
BLAST of CmoCh10G004240 vs. ExPASy TrEMBL
Match:
A0A6J1JJ17 (uncharacterized protein LOC111485037 OS=Cucurbita maxima OX=3661 GN=LOC111485037 PE=4 SV=1)
HSP 1 Score: 262.3 bits (669), Expect = 1.4e-66
Identity = 132/143 (92.31%), Postives = 134/143 (93.71%), Query Frame = 0
Query: 1 MGNEHRLHLSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLP 60
MGN+HRLH SENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLP
Sbjct: 1 MGNDHRLHPSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLP 60
Query: 61 KDKPSENLQPPPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAFGSSS 120
KDKPSENL PPP PN V G SKTPHQVP+QQEAAKIW WMKPRKKLRNVVKKNGAFGSSS
Sbjct: 61 KDKPSENLHPPPPPNYVDGTSKTPHQVPKQQEAAKIWSWMKPRKKLRNVVKKNGAFGSSS 120
Query: 121 SSRRHVNQESEFYRKSNDESSSS 144
SSR HVNQESEF RKSNDESSSS
Sbjct: 121 SSRPHVNQESEFCRKSNDESSSS 143
BLAST of CmoCh10G004240 vs. ExPASy TrEMBL
Match:
A0A5A7UQX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005980 PE=4 SV=1)
HSP 1 Score: 181.8 bits (460), Expect = 2.4e-42
Identity = 103/147 (70.07%), Postives = 112/147 (76.19%), Query Frame = 0
Query: 4 EHRLH-LSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKD 63
+H LH LSE PFSLLQAN+ FVHKILSRNSS GRSARLPAC LPGQIPF WE QPGLPK+
Sbjct: 5 DHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKN 64
Query: 64 KPSENLQP---PPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAFGSS 123
+PSE P PP +S G SKTPH VP +Q KIWFW K R+K R VKKNGA GSS
Sbjct: 65 QPSETPPPAELPPPSSSAFGLSKTPHVVP-KQAPVKIWFWNKQRRKSRRAVKKNGALGSS 124
Query: 124 SSSRRHVNQESEF-YRKSNDESSSSLS 146
SS RRHV++ESEF RKSNDES SS S
Sbjct: 125 SSPRRHVDRESEFCRRKSNDESPSSSS 150
BLAST of CmoCh10G004240 vs. ExPASy TrEMBL
Match:
A0A5D3CKX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00370 PE=4 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 1.6e-41
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0
Query: 4 EHRLH-LSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKD 63
+H LH LSE PFSLLQAN+ FVHKILSRNSS GRSARLPAC LPGQIPF WE QPGLPK+
Sbjct: 5 DHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKN 64
Query: 64 KPSENLQP---PPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAFGSS 123
+PSE P PP +S G SKTPH VP +Q KIWFW K R+K R VKKNGA GSS
Sbjct: 65 QPSETPPPAELPPPSSSAFGLSKTPHVVP-KQAPVKIWFWNKQRRKSRRAVKKNGALGSS 124
Query: 124 SSSRRHVNQESEF-YRKSNDESSSSLS 146
SS RRHV++ESEF RKSND S SS S
Sbjct: 125 SSPRRHVDRESEFCRRKSNDGSPSSSS 150
BLAST of CmoCh10G004240 vs. ExPASy TrEMBL
Match:
A0A0A0LWV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 2.1e-41
Identity = 102/147 (69.39%), Postives = 115/147 (78.23%), Query Frame = 0
Query: 4 EHRLH-LSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKD 63
+H LH LSE PFSLLQAN+LFVHKILSRNSS GRSARLPAC LPGQ+PF WEAQPGLPK+
Sbjct: 5 DHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKN 64
Query: 64 KPSENLQP---PPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAFGSS 123
+PS+N P PP +S G SKTPH VP +Q KIWFW K R+K R VKK+GA G S
Sbjct: 65 QPSDNPPPVKLPPPSSSALGLSKTPHVVP-KQAPVKIWFWNKQRRKSRRAVKKSGALG-S 124
Query: 124 SSSRRHVNQESEFYR-KSNDESSSSLS 146
SS RRHV+++SEF R KSNDESSSS S
Sbjct: 125 SSPRRHVDRDSEFCRKKSNDESSSSSS 149
BLAST of CmoCh10G004240 vs. ExPASy TrEMBL
Match:
W9QV27 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012857 PE=4 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 2.7e-09
Identity = 51/137 (37.23%), Postives = 71/137 (51.82%), Query Frame = 0
Query: 1 MGNEHRLHLSENPFSLLQANELFVHKILSRNSSVGR-SARLPACRLPGQIPFIWEAQPGL 60
MG R + + P S+ QA+E FV KILSRNSSVG S+ L R P ++PF WE+QPG
Sbjct: 1 MGKVLRKNPKKPPISVFQADERFVKKILSRNSSVGNCSSHLQNFRTPAEVPFNWESQPGK 60
Query: 61 PKDKPS-ENLQPPPSPNSVQGASKTPHQVPEQ-----------QEAAKIWFWMKPRKKLR 120
PKD P+ E +PPP ++ P VP + Q+ ++ W K ++
Sbjct: 61 PKDPPTGEFFRPPPVDLLPSPEARAPRYVPARSPPRADGTVVSQQTLRVRLWKKLIERGH 120
Query: 121 NVVKKNGAFGSSSSSRR 125
VKK A S ++ R
Sbjct: 121 KTVKKVRAKAPSLTAAR 137
BLAST of CmoCh10G004240 vs. NCBI nr
Match:
KAG6589705.1 (Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 292.0 bits (746), Expect = 3.5e-75
Identity = 147/162 (90.74%), Postives = 150/162 (92.59%), Query Frame = 0
Query: 1 MGNEHRLHLSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLP 60
MGNEHRLHLSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLP
Sbjct: 1 MGNEHRLHLSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLP 60
Query: 61 KDKPSENLQPPPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAFGSSS 120
KDKPSENLQPPPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAFGSSS
Sbjct: 61 KDKPSENLQPPPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAFGSSS 120
Query: 121 SSRRHVNQESEFYRKSNDESSSSLSFLRRPMAMPDVGLNSVA 163
SSRRHVNQESEFYRKSNDESSSSLS + ++ N A
Sbjct: 121 SSRRHVNQESEFYRKSNDESSSSLSCISHSLSSSSSSSNGYA 162
BLAST of CmoCh10G004240 vs. NCBI nr
Match:
XP_022987494.1 (uncharacterized protein LOC111485037 [Cucurbita maxima])
HSP 1 Score: 262.3 bits (669), Expect = 2.9e-66
Identity = 132/143 (92.31%), Postives = 134/143 (93.71%), Query Frame = 0
Query: 1 MGNEHRLHLSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLP 60
MGN+HRLH SENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLP
Sbjct: 1 MGNDHRLHPSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLP 60
Query: 61 KDKPSENLQPPPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAFGSSS 120
KDKPSENL PPP PN V G SKTPHQVP+QQEAAKIW WMKPRKKLRNVVKKNGAFGSSS
Sbjct: 61 KDKPSENLHPPPPPNYVDGTSKTPHQVPKQQEAAKIWSWMKPRKKLRNVVKKNGAFGSSS 120
Query: 121 SSRRHVNQESEFYRKSNDESSSS 144
SSR HVNQESEF RKSNDESSSS
Sbjct: 121 SSRPHVNQESEFCRKSNDESSSS 143
BLAST of CmoCh10G004240 vs. NCBI nr
Match:
KAA0058272.1 (hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa])
HSP 1 Score: 181.8 bits (460), Expect = 5.0e-42
Identity = 103/147 (70.07%), Postives = 112/147 (76.19%), Query Frame = 0
Query: 4 EHRLH-LSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKD 63
+H LH LSE PFSLLQAN+ FVHKILSRNSS GRSARLPAC LPGQIPF WE QPGLPK+
Sbjct: 5 DHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKN 64
Query: 64 KPSENLQP---PPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAFGSS 123
+PSE P PP +S G SKTPH VP +Q KIWFW K R+K R VKKNGA GSS
Sbjct: 65 QPSETPPPAELPPPSSSAFGLSKTPHVVP-KQAPVKIWFWNKQRRKSRRAVKKNGALGSS 124
Query: 124 SSSRRHVNQESEF-YRKSNDESSSSLS 146
SS RRHV++ESEF RKSNDES SS S
Sbjct: 125 SSPRRHVDRESEFCRRKSNDESPSSSS 150
BLAST of CmoCh10G004240 vs. NCBI nr
Match:
TYK11824.1 (hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa])
HSP 1 Score: 179.1 bits (453), Expect = 3.3e-41
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0
Query: 4 EHRLH-LSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKD 63
+H LH LSE PFSLLQAN+ FVHKILSRNSS GRSARLPAC LPGQIPF WE QPGLPK+
Sbjct: 5 DHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKN 64
Query: 64 KPSENLQP---PPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAFGSS 123
+PSE P PP +S G SKTPH VP +Q KIWFW K R+K R VKKNGA GSS
Sbjct: 65 QPSETPPPAELPPPSSSAFGLSKTPHVVP-KQAPVKIWFWNKQRRKSRRAVKKNGALGSS 124
Query: 124 SSSRRHVNQESEF-YRKSNDESSSSLS 146
SS RRHV++ESEF RKSND S SS S
Sbjct: 125 SSPRRHVDRESEFCRRKSNDGSPSSSS 150
BLAST of CmoCh10G004240 vs. NCBI nr
Match:
KGN65459.1 (hypothetical protein Csa_020126 [Cucumis sativus])
HSP 1 Score: 178.7 bits (452), Expect = 4.3e-41
Identity = 102/147 (69.39%), Postives = 115/147 (78.23%), Query Frame = 0
Query: 4 EHRLH-LSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKD 63
+H LH LSE PFSLLQAN+LFVHKILSRNSS GRSARLPAC LPGQ+PF WEAQPGLPK+
Sbjct: 5 DHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKN 64
Query: 64 KPSENLQP---PPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAFGSS 123
+PS+N P PP +S G SKTPH VP +Q KIWFW K R+K R VKK+GA G S
Sbjct: 65 QPSDNPPPVKLPPPSSSALGLSKTPHVVP-KQAPVKIWFWNKQRRKSRRAVKKSGALG-S 124
Query: 124 SSSRRHVNQESEFYR-KSNDESSSSLS 146
SS RRHV+++SEF R KSNDESSSS S
Sbjct: 125 SSPRRHVDRDSEFCRKKSNDESSSSSS 149
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1JJ17 | 1.4e-66 | 92.31 | uncharacterized protein LOC111485037 OS=Cucurbita maxima OX=3661 GN=LOC111485037... | [more] |
| A0A5A7UQX0 | 2.4e-42 | 70.07 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3CKX4 | 1.6e-41 | 69.39 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A0A0LWV3 | 2.1e-41 | 69.39 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1 | [more] |
| W9QV27 | 2.7e-09 | 37.23 | Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012857 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG6589705.1 | 3.5e-75 | 90.74 | Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. s... | [more] |
| XP_022987494.1 | 2.9e-66 | 92.31 | uncharacterized protein LOC111485037 [Cucurbita maxima] | [more] |
| KAA0058272.1 | 5.0e-42 | 70.07 | hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa] | [more] |
| TYK11824.1 | 3.3e-41 | 69.39 | hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa] | [more] |
| KGN65459.1 | 4.3e-41 | 69.39 | hypothetical protein Csa_020126 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
