Homology
BLAST of CmoCh10G002590 vs. ExPASy Swiss-Prot
Match:
Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)
HSP 1 Score: 965.7 bits (2495), Expect = 5.6e-280
Identity = 574/1474 (38.94%), Postives = 831/1474 (56.38%), Query Frame = 0
Query: 6 NTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEET 65
N S +++ KLT NYL+WS Q+ L GF+DGS P TI + +
Sbjct: 11 NNTSILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPR- 70
Query: 66 GNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFAS---- 125
+NP++T W QD+L+ S + +++ V + TTA + W TL + +A+
Sbjct: 71 ------VNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYG 130
Query: 126 -----------------TIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPL 185
TI DY + + D LA +GK ++ +E + +L+ L +Y P+
Sbjct: 131 HVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPV 190
Query: 186 VTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQL----SSANNVNRISIRGGANGGRG 245
+ I + T+++++ +L++E + L + + ++ ++ N + NG R
Sbjct: 191 IDQIAAKDTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRN 250
Query: 246 SR--GRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAY 305
+R R+ NS Q T +P SK CQICG H A +C Q +
Sbjct: 251 NRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYLGK---CQICGVQGHSAKRCSQL--QHF 310
Query: 306 QAENNLKQ-----------AALATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTD 365
+ N +Q A LA S NW +D+GAT HIT+D L+ + YTG D
Sbjct: 311 LSSVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGD 370
Query: 366 QIQVANGAGLSISHIGNSLISGSS--LVLKHILYVPKINKHLISVQRLASDNNAVVEFHP 425
+ VA+G+ + ISH G++ +S S L L +ILYVP I+K+LISV RL + N VEF P
Sbjct: 371 DVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFP 430
Query: 426 NYFLVKDRVTKKLLLHGRCKNGLYVLPHNFSQ-----ALLTAKLSKEQWHRRLGHPASPI 485
F VKD T LL G+ K+ LY P SQ A ++K + WH RLGHPA I
Sbjct: 431 ASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPSI 490
Query: 486 TIRILQDNNLAIDTNIPSSSICNACQLGKAHQLPFGSSQHVSTAPLQLIHTDVWGPSIAS 545
++ + +L++ C+ C + K++++PF S ST PL+ I++DVW I S
Sbjct: 491 LNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPILS 550
Query: 546 VNNSKYYVSFVDDFSRYVWIYFLRCKSDVESVFLQFQKHVETMLNTKIRSVQSDWGGEYH 605
+N +YYV FVD F+RY W+Y L+ KS V+ F+ F+ +E T+I + SD GGE+
Sbjct: 551 HDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFV 610
Query: 606 RLHNYFKSTGIEHHISCPHTHQQNGLVERKHRHIVETGLALLAQANMPLSYWDEAFNTAC 665
L YF GI H S PHT + NGL ERKHRHIVETGL LL+ A++P +YW AF A
Sbjct: 611 ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAV 670
Query: 666 FLINRMPSRTIQQDTPLHKLFGKSPDYSMLRVFGCACWPNLRPYNNKKLSFRTTRCIFLG 725
+LINR+P+ +Q ++P KLFG SP+Y LRVFGCAC+P LRPYN KL ++ +C+FLG
Sbjct: 671 YLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLG 730
Query: 726 YSSSHKGYKCLNRSTGRIYISRDVVFDENIFPF--------------EESK--------- 785
YS + Y CL+ T R+YISR V FDEN FPF ES
Sbjct: 731 YSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTL 790
Query: 786 -------PPNKTTNPHHPVLLP------------ALAKLANFYTENALTDIEPVVSNSHM 845
P ++PHH P + + L + ++ + + EP +
Sbjct: 791 PTRTPVLPAPSCSDPHHAATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNG 850
Query: 846 NDGQTDNIASDNLSGVSLSSADNTRSSEEIAEYEAESSSINAQNQTHEHVSDQPTEAASQ 905
T + + S +++ N ++E ++ A+S S AQ+ + S PT +AS
Sbjct: 851 PQPTTQPTQTQTQTHSSQNTSQNNPTNESPSQL-AQSLSTPAQSSSS---SPSPTTSASS 910
Query: 906 H--------------PMRTRLRNNIVQA-----KQFTDGTIRYSETSRKFASAVTITTPI 965
P ++ NN QA T + + K++ AV++
Sbjct: 911 SSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLA--- 970
Query: 966 IETATEPRNLQEAMQHPRWRGAMNDELSALKRNATWDLVPPKPG-INLIDSKWVYKVKRK 1025
+EPR +A++ RWR AM E++A N TWDLVPP P + ++ +W++ K
Sbjct: 971 --AESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYN 1030
Query: 1026 ADGSVERLKARLVAKGFKQRFGVDYTDTFSPVIKPSTIRVILSLAVTKGWNMRQVDIQNA 1085
+DGS+ R KARLVAKG+ QR G+DY +TFSPVIK ++IR++L +AV + W +RQ+D+ NA
Sbjct: 1031 SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1090
Query: 1086 FLHGILKEEVYMRQPPGFQDSAKPKNYICKLKKALYGLKQAPKAWHSRLTGKLIELGFKA 1145
FL G L ++VYM QPPGF D +P NY+CKL+KALYGLKQAP+AW+ L L+ +GF
Sbjct: 1091 FLQGTLTDDVYMSQPPGFIDKDRP-NYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVN 1150
Query: 1146 SVADSSLFILKNREITIYMLIYVDDIIIVSSSDQATERLIQKLKIDFAVKDLGGLEYFLG 1205
SV+D+SLF+L+ + +YML+YVDDI+I + + L F+VKD L YFLG
Sbjct: 1151 SVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLG 1210
Query: 1206 IEVKKTRDGIILSQRRYALDLLKRVNMEKCKPMSTPMGSAEKLFREQGIPLSAEEQFKYR 1265
IE K+ G+ LSQRRY LDLL R NM KP++TPM + KL G L+ + +YR
Sbjct: 1211 IEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLT--DPTEYR 1270
Query: 1266 STVGALQYLTMTRPDLAFAVNKVCQYLHTPTDAHWGAVKRILRYVKGTLALGVKIQK-ST 1325
VG+LQYL TRPD+++AVN++ Q++H PT+ H A+KRILRY+ GT G+ ++K +T
Sbjct: 1271 GIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNT 1330
Query: 1326 MMLSGFSDADWAGCPDDRRSTSGFAVFLGANLISWSSRKQATVSRSSTEAEYKAIANLTA 1372
+ L +SDADWAG DD ST+G+ V+LG + ISWSS+KQ V RSSTEAEY+++AN ++
Sbjct: 1331 LSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSS 1390
BLAST of CmoCh10G002590 vs. ExPASy Swiss-Prot
Match:
Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)
HSP 1 Score: 961.8 bits (2485), Expect = 8.1e-279
Identity = 564/1458 (38.68%), Postives = 827/1458 (56.72%), Query Frame = 0
Query: 5 NNTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEE 64
N + + ++S V KLT NYL+WS Q+ L GF+DGS P P TI +
Sbjct: 12 NTNILNVNMSNV--TKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPR 71
Query: 65 TGNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTIA 124
+NP++T W QD+L+ S I +++ V + TTA + W TL + +A+
Sbjct: 72 -------VNPDYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSY 131
Query: 125 DYFRKVKHLG--DTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDVYTVSDVYA 184
+ +++ + D LA +GK ++ +E + +L+ L DY P++ I + ++++++
Sbjct: 132 GHVTQLRFITRFDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHE 191
Query: 185 HMLSYEMRHLRKGTFEQLSSANNVNRISIRG-GANGGRGSRGRSRQLNSGHGQSRRTVNN 244
+++ E + L + E + NV ++ R N + +RG +R N+ + +S +
Sbjct: 192 RLINRESKLLALNSAEVVPITANV--VTHRNTNTNRNQNNRGDNRNYNNNNNRSNSWQPS 251
Query: 245 PGRQPSKTQSSSGIV--CQICGKPNHDALQC--WHRFDQAYQAENNLK-------QAALA 304
S + + CQIC H A +C H+F + + +A LA
Sbjct: 252 SSGSRSDNRQPKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLA 311
Query: 305 TSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAGLSISHIGNSLI--S 364
+ + NW +D+GAT HIT+D L+ + YTG D + +A+G+ + I+H G++ + S
Sbjct: 312 VNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTS 371
Query: 365 GSSLVLKHILYVPKINKHLISVQRLASDNNAVVEFHPNYFLVKDRVTKKLLLHGRCKNGL 424
SL L +LYVP I+K+LISV RL + N VEF P F VKD T LL G+ K+ L
Sbjct: 372 SRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDEL 431
Query: 425 YVLPHNFSQALL-----TAKLSKEQWHRRLGHPASPITIRILQDNNLAIDTNIPSSSICN 484
Y P SQA+ +K + WH RLGHP+ I ++ +++L + C+
Sbjct: 432 YEWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCS 491
Query: 485 ACQLGKAHQLPFGSSQHVSTAPLQLIHTDVWGPSIASVNNSKYYVSFVDDFSRYVWIYFL 544
C + K+H++PF +S S+ PL+ I++DVW I S++N +YYV FVD F+RY W+Y L
Sbjct: 492 DCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVIFVDHFTRYTWLYPL 551
Query: 545 RCKSDVESVFLQFQKHVETMLNTKIRSVQSDWGGEYHRLHNYFKSTGIEHHISCPHTHQQ 604
+ KS V+ F+ F+ VE T+I ++ SD GGE+ L +Y GI H S PHT +
Sbjct: 552 KQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEH 611
Query: 605 NGLVERKHRHIVETGLALLAQANMPLSYWDEAFNTACFLINRMPSRTIQQDTPLHKLFGK 664
NGL ERKHRHIVE GL LL+ A++P +YW AF+ A +LINR+P+ +Q +P KLFG+
Sbjct: 612 NGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQ 671
Query: 665 SPDYSMLRVFGCACWPNLRPYNNKKLSFRTTRCIFLGYSSSHKGYKCLNRSTGRIYISRD 724
P+Y L+VFGCAC+P LRPYN KL ++ +C F+GYS + Y CL+ TGR+Y SR
Sbjct: 672 PPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRH 731
Query: 725 VVFDENIFPF--------------EESKP--PNKTTNPHHPVLLPALAKLANFYTENALT 784
V FDE FPF +S P P+ TT P P++LPA L + T
Sbjct: 732 VQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCLG----PHLDT 791
Query: 785 DIEPVVSNSHMNDGQTDNIASDNLSGVSLSSADNTRSSEEIAEYEAESSSINAQNQTHEH 844
P S S + T ++S NL S+SS SSE A +QT
Sbjct: 792 SPRPPSSPSPL---CTTQVSSSNLPSSSISSPS---SSEPTAPSHNGPQPTAQPHQTQNS 851
Query: 845 VSDQP--------TEAASQHPMRTRLRNNIVQAKQFTDGTIRYSETSRKFASA------- 904
S+ P + + + + L + + + + SE + +S+
Sbjct: 852 NSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPSTSISEPNSPSSSSTSTPPLP 911
Query: 905 -VTITTPIIE----------------------------------TATEPRNLQEAMQHPR 964
V PII+ +EPR +AM+ R
Sbjct: 912 PVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYATSLAANSEPRTAIQAMKDDR 971
Query: 965 WRGAMNDELSALKRNATWDLV-PPKPGINLIDSKWVYKVKRKADGSVERLKARLVAKGFK 1024
WR AM E++A N TWDLV PP P + ++ +W++ K +DGS+ R KARLVAKG+
Sbjct: 972 WRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYN 1031
Query: 1025 QRFGVDYTDTFSPVIKPSTIRVILSLAVTKGWNMRQVDIQNAFLHGILKEEVYMRQPPGF 1084
QR G+DY +TFSPVIK ++IR++L +AV + W +RQ+D+ NAFL G L +EVYM QPPGF
Sbjct: 1032 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGF 1091
Query: 1085 QDSAKPKNYICKLKKALYGLKQAPKAWHSRLTGKLIELGFKASVADSSLFILKNREITIY 1144
D +P +Y+C+L+KA+YGLKQAP+AW+ L L+ +GF S++D+SLF+L+ IY
Sbjct: 1092 VDKDRP-DYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIY 1151
Query: 1145 MLIYVDDIIIVSSSDQATERLIQKLKIDFAVKDLGGLEYFLGIEVKKTRDGIILSQRRYA 1204
ML+YVDDI+I + + + L F+VK+ L YFLGIE K+ G+ LSQRRY
Sbjct: 1152 MLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYT 1211
Query: 1205 LDLLKRVNMEKCKPMSTPMGSAEKLFREQGIPLSAEEQFKYRSTVGALQYLTMTRPDLAF 1264
LDLL R NM KP++TPM ++ KL G L + +YR VG+LQYL TRPDL++
Sbjct: 1212 LDLLARTNMLTAKPVATPMATSPKLTLHSGTKL--PDPTEYRGIVGSLQYLAFTRPDLSY 1271
Query: 1265 AVNKVCQYLHTPTDAHWGAVKRILRYVKGTLALGVKIQK-STMMLSGFSDADWAGCPDDR 1324
AVN++ QY+H PTD HW A+KR+LRY+ GT G+ ++K +T+ L +SDADWAG DD
Sbjct: 1272 AVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDY 1331
Query: 1325 RSTSGFAVFLGANLISWSSRKQATVSRSSTEAEYKAIANLTAEMIWIKSLLKELGVYQSK 1374
ST+G+ V+LG + ISWSS+KQ V RSSTEAEY+++AN ++E+ WI SLL ELG+ S
Sbjct: 1332 VSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSH 1391
BLAST of CmoCh10G002590 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 581.6 bits (1498), Expect = 2.3e-164
Identity = 423/1333 (31.73%), Postives = 663/1333 (49.74%), Query Frame = 0
Query: 79 WYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFAS---TIADYFRK------ 138
W D+ S I ++++V++ ++ TAR W LE + S T Y +K
Sbjct: 52 WADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALH 111
Query: 139 -------VKHLG------DTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDVYT 198
+ HL LA +G +IE+E+ +L L YD L T+I
Sbjct: 112 MSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIE 171
Query: 199 VSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGR-GSRGRSRQLNSGHGQS 258
+ DV + +L E + Q R R N GR G+RG+S+ + ++
Sbjct: 172 LKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRN 231
Query: 259 RRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAENNLKQAALATSGYT 318
N PG + + G+ N D + + N ++ + SG
Sbjct: 232 CYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSG-- 291
Query: 319 SDTNWYVDTGATDHITNDLERLTTRERYTGTD--QIQVANGAGLSISHIGNSLIS---GS 378
++ W VDT A+ H T + RY D +++ N + I+ IG+ I G
Sbjct: 292 PESEWVVDTAASHHATPVRDLFC---RYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGC 351
Query: 379 SLVLKHILYVPKINKHLISVQRLASDNNAVVEFHPNYFLVKDRVTKKLLL--HGRCKNGL 438
+LVLK + +VP + +LIS +A D + + N K R+TK L+ G + L
Sbjct: 352 TLVLKDVRHVPDLRMNLIS--GIALDRDGYESYFANQ---KWRLTKGSLVIAKGVARGTL 411
Query: 439 YVLPHNFSQALLTA---KLSKEQWHRRLGHPASPITIRILQDNNLAIDTNIPSSSICNAC 498
Y Q L A ++S + WH+R+GH S ++IL +L + C+ C
Sbjct: 412 YRTNAEICQGELNAAQDEISVDLWHKRMGH-MSEKGLQILAKKSLISYAKGTTVKPCDYC 471
Query: 499 QLGKAHQLPFGSSQHVSTAPLQLIHTDVWGP-SIASVNNSKYYVSFVDDFSRYVWIYFLR 558
GK H++ F +S L L+++DV GP I S+ +KY+V+F+DD SR +W+Y L+
Sbjct: 472 LFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILK 531
Query: 559 CKSDVESVFLQFQKHVETMLNTKIRSVQSDWGGEY--HRLHNYFKSTGIEHHISCPHTHQ 618
K V VF +F VE K++ ++SD GGEY Y S GI H + P T Q
Sbjct: 532 TKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQ 591
Query: 619 QNGLVERKHRHIVETGLALLAQANMPLSYWDEAFNTACFLINRMPSRTIQQDTPLHKLFG 678
NG+ ER +R IVE ++L A +P S+W EA TAC+LINR PS + + P
Sbjct: 592 HNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTN 651
Query: 679 KSPDYSMLRVFGCACWPNLRPYNNKKLSFRTTRCIFLGYSSSHKGYKCLNRSTGRIYISR 738
K YS L+VFGC + ++ KL ++ CIF+GY GY+ + ++ SR
Sbjct: 652 KEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSR 711
Query: 739 DVVFDENIFPFEESKPPNKTTNPHHPVLLPALAKLANFYTENALTDIEPVVSNSHMNDGQ 798
DVVF E+ D+ V N + +
Sbjct: 712 DVVFRES--------------------------------EVRTAADMSEKVKNGIIPNFV 771
Query: 799 TDNIASDNLSGVSLSSADNTRSSEEIAEYEAESSSINAQNQTHEHVSDQPTEAASQH-PM 858
T S+N + ++ + + E+ E + ++ + EH PT+ QH P+
Sbjct: 772 TIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEH----PTQGEEQHQPL 831
Query: 859 RTRLRNNIVQAKQFTDGTIRYSETSRKFASAVTITTPIIETATEPRNLQEAMQHP---RW 918
R R + SR++ S + +I EP +L+E + HP +
Sbjct: 832 RRSERPRV---------------ESRRYPSTEYV---LISDDREPESLKEVLSHPEKNQL 891
Query: 919 RGAMNDELSALKRNATWDLVPPKPGINLIDSKWVYKVKRKADGSVERLKARLVAKGFKQR 978
AM +E+ +L++N T+ LV G + KWV+K+K+ D + R KARLV KGF+Q+
Sbjct: 892 MKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQK 951
Query: 979 FGVDYTDTFSPVIKPSTIRVILSLAVTKGWNMRQVDIQNAFLHGILKEEVYMRQPPGFQD 1038
G+D+ + FSPV+K ++IR ILSLA + + Q+D++ AFLHG L+EE+YM QP GF+
Sbjct: 952 KGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEV 1011
Query: 1039 SAKPKNYICKLKKALYGLKQAPKAWHSRLTGKLIELGFKASVADSSLFILKNREIT-IYM 1098
+ K K+ +CKL K+LYGLKQAP+ W+ + + + + +D ++ + E I +
Sbjct: 1012 AGK-KHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIIL 1071
Query: 1099 LIYVDDIIIVSSSDQATERLIQKLKIDFAVKDLGGLEYFLGIEV--KKTRDGIILSQRRY 1158
L+YVDD++IV +L L F +KDLG + LG+++ ++T + LSQ +Y
Sbjct: 1072 LLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKY 1131
Query: 1159 ALDLLKRVNMEKCKPMSTPMGSAEKLFREQGIPLSAEE-----QFKYRSTVGALQY-LTM 1218
+L+R NM+ KP+STP+ KL ++ P + EE + Y S VG+L Y +
Sbjct: 1132 IERVLERFNMKNAKPVSTPLAGHLKLSKKM-CPTTVEEKGNMAKVPYSSAVGSLMYAMVC 1191
Query: 1219 TRPDLAFAVNKVCQYLHTPTDAHWGAVKRILRYVKGTLALGVKIQKSTMMLSGFSDADWA 1278
TRPD+A AV V ++L P HW AVK ILRY++GT + S +L G++DAD A
Sbjct: 1192 TRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMA 1251
Query: 1279 GCPDDRRSTSGFAVFLGANLISWSSRKQATVSRSSTEAEYKAIANLTAEMIWIKSLLKEL 1338
G D+R+S++G+ ISW S+ Q V+ S+TEAEY A EMIW+K L+EL
Sbjct: 1252 GDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQEL 1311
Query: 1339 GVYQSKAPRLWCDNLGATYLTSNPVFHARTKHIEVDFHFVREQVARKAMEVRFISSSDQV 1363
G++Q K ++CD+ A L+ N ++HARTKHI+V +H++RE V ++++V IS+++
Sbjct: 1312 GLHQ-KEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENP 1316
BLAST of CmoCh10G002590 vs. ExPASy Swiss-Prot
Match:
P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)
HSP 1 Score: 492.7 bits (1267), Expect = 1.4e-137
Identity = 409/1439 (28.42%), Postives = 670/1439 (46.56%), Query Frame = 0
Query: 24 ENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGNRKII--INPEFTVWYP 83
E Y +W +I L Q+++ VDG MP + + +E II ++ F +
Sbjct: 14 EKYAIWKFRIRALLAEQDVLKVVDGLMPNEVDD-SWKKAERCAKSTIIEYLSDSFLNFAT 73
Query: 84 QDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTIADYFRKVKHLGDTLAAIG 143
D ++ + ++ R+ ++L+ ++ +F L L A G
Sbjct: 74 SDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAG 133
Query: 144 KRIEDEELIAYMLQGLGPDYDPLVTSITTRTDV-YTVSDVYAHMLSYEMRHLRKGTFEQL 203
+IE+ + I+++L L YD ++T+I T ++ T++ V +L E+ K +
Sbjct: 134 AKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEI----KIKNDHN 193
Query: 204 SSANNVNRISIRGGANGGRGSRGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQIC 263
++ V + N + + ++R V P ++ K S + C C
Sbjct: 194 DTSKKVMNAIVHNNNNTYKNNLFKNR------------VTKP-KKIFKGNSKYKVKCHHC 253
Query: 264 GKPNHDALQCWHRFDQAYQAEN--NLKQAALATS-------------GYTSDTNWYVDTG 323
G+ H C+H + + +N N KQ ATS + + +D+G
Sbjct: 254 GREGHIKKDCFH-YKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCGFVLDSG 313
Query: 324 ATDHITNDLERLTTRERYTGTDQIQVANGAGLSISHIGN----------SLISGSSLVLK 383
A+DH+ ND E L TD ++V ++++ G L + + L+
Sbjct: 314 ASDHLIND-ESLY-------TDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLE 373
Query: 384 HILYVPKINKHLISVQRLASDNNAVVEFHPNYFLVKDRVTKKLLLHGRCKNGLYVLPH-- 443
+L+ + +L+SV+RL + +EF K VT KNGL V+ +
Sbjct: 374 DVLFCKEAAGNLMSVKRL-QEAGMSIEFD------KSGVTIS-------KNGLMVVKNSG 433
Query: 444 --------NFSQALLTAKLSK--EQWHRRLGHPASPITIRILQDN---NLAIDTNIP-SS 503
NF + AK WH R GH + + I + N + ++ N+ S
Sbjct: 434 MLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSC 493
Query: 504 SICNACQLGKAHQLPF---GSSQHVSTAPLQLIHTDVWGP-SIASVNNSKYYVSFVDDFS 563
IC C GK +LPF H+ PL ++H+DV GP + ++++ Y+V FVD F+
Sbjct: 494 EICEPCLNGKQARLPFKQLKDKTHIK-RPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFT 553
Query: 564 RYVWIYFLRCKSDVESVFLQFQKHVETMLNTKIRSVQSDWGGEY--HRLHNYFKSTGIEH 623
Y Y ++ KSDV S+F F E N K+ + D G EY + + + GI +
Sbjct: 554 HYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISY 613
Query: 624 HISCPHTHQQNGLVERKHRHIVETGLALLAQANMPLSYWDEAFNTACFLINRMPSRTI-- 683
H++ PHT Q NG+ ER R I E +++ A + S+W EA TA +LINR+PSR +
Sbjct: 614 HLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVD 673
Query: 684 QQDTPLHKLFGKSPDYSMLRVFGCACWPNLRPYNNKKLSF--RTTRCIFLGYSSSHKGYK 743
TP K P LRVFG + +++ NK+ F ++ + IF+GY + G+K
Sbjct: 674 SSKTPYEMWHNKKPYLKHLRVFGATVYVHIK---NKQGKFDDKSFKSIFVGYEPN--GFK 733
Query: 744 CLNRSTGRIYISRDVVFD------------ENIFPFEESKPPNKT-TNPHHPVL------ 803
+ + ++RDVV D E +F + + NK N ++
Sbjct: 734 LWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPN 793
Query: 804 -------LPALAKLANFYTENALTDIEPVVSNSHMNDG-QTDNIA----SDNLSGVSLSS 863
+ L +N D ++ N+ + DNI S + L+
Sbjct: 794 ESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKYFLNE 853
Query: 864 ADNTRSSEEIAEYEAESS-SINAQNQTHEHVS----DQPTEAASQHPMRTRLRNNIVQAK 923
+ + + + E + + + + +++T EH+ D PT+ + R +
Sbjct: 854 SKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRR------SER 913
Query: 924 QFTDGTIRYSETSRKFASAVTITTPII-ETATEPRNLQEAMQHPRWRGAMNDELSALKRN 983
T I Y+E V I + +Q W A+N EL+A K N
Sbjct: 914 LKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKIN 973
Query: 984 ATWDLVPPKPGINLIDSKWVYKVKRKADGSVERLKARLVAKGFKQRFGVDYTDTFSPVIK 1043
TW + N++DS+WV+ VK G+ R KARLVA+GF Q++ +DY +TF+PV +
Sbjct: 974 NTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVAR 1033
Query: 1044 PSTIRVILSLAVTKGWNMRQVDIQNAFLHGILKEEVYMRQPPGFQDSAKPKNYICKLKKA 1103
S+ R ILSL + + Q+D++ AFL+G LKEE+YMR P G ++ + +CKL KA
Sbjct: 1034 ISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNS---DNVCKLNKA 1093
Query: 1104 LYGLKQAPKAWHSRLTGKLIELGFKASVADSSLFILKNREI--TIYMLIYVDDIIIVSSS 1163
+YGLKQA + W L E F S D ++IL I IY+L+YVDD++I +
Sbjct: 1094 IYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGD 1153
Query: 1164 DQATERLIQKLKIDFAVKDLGGLEYFLGIEVKKTRDGIILSQRRYALDLLKRVNMEKCKP 1223
+ L F + DL +++F+GI ++ D I LSQ Y +L + NME C
Sbjct: 1154 MTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNA 1213
Query: 1224 MSTPMGSAEKLFREQGIPLSAEEQFK--YRSTVGALQYLTM-TRPDLAFAVNKVCQYLHT 1283
+STP+ S K+ E L+++E RS +G L Y+ + TRPDL AVN + +Y
Sbjct: 1214 VSTPLPS--KINYEL---LNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSK 1273
Query: 1284 PTDAHWGAVKRILRYVKGTLALGVKIQKSTMM---LSGFSDADWAGCPDDRRSTSGFAV- 1343
W +KR+LRY+KGT+ + + +K+ + G+ D+DWAG DR+ST+G+
Sbjct: 1274 NNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFK 1333
Query: 1344 FLGANLISWSSRKQATVSRSSTEAEYKAIANLTAEMIWIKSLLKELGVYQSKAPRLWCDN 1363
NLI W++++Q +V+ SSTEAEY A+ E +W+K LL + + +++ DN
Sbjct: 1334 MFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDN 1391
BLAST of CmoCh10G002590 vs. ExPASy Swiss-Prot
Match:
P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 5.1e-55
Identity = 112/228 (49.12%), Postives = 151/228 (66.23%), Query Frame = 0
Query: 1055 IYMLIYVDDIIIVSSSDQATERLIQKLKIDFAVKDLGGLEYFLGIEVKKTRDGIILSQRR 1114
+Y+L+YVDDI++ SS+ LI +L F++KDLG + YFLGI++K G+ LSQ +
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 1115 YALDLLKRVNMEKCKPMSTPMGSAEKLFREQGIPLSAEEQFKYRSTVGALQYLTMTRPDL 1174
YA +L M CKPMSTP+ + +RS VGALQYLT+TRPD+
Sbjct: 61 YAEQILNNAGMLDCKPMSTPL---PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDI 120
Query: 1175 AFAVNKVCQYLHTPTDAHWGAVKRILRYVKGTLALGVKIQK-STMMLSGFSDADWAGCPD 1234
++AVN VCQ +H PT A + +KR+LRYVKGT+ G+ I K S + + F D+DWAGC
Sbjct: 121 SYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTS 180
Query: 1235 DRRSTSGFAVFLGANLISWSSRKQATVSRSSTEAEYKAIANLTAEMIW 1282
RRST+GF FLG N+ISWS+++Q TVSRSSTE EY+A+A AE+ W
Sbjct: 181 TRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
BLAST of CmoCh10G002590 vs. ExPASy TrEMBL
Match:
A0A4D6GKR5 (Hopscotch gagpol polyprotein OS=Zea mays OX=4577 PE=4 SV=1)
HSP 1 Score: 1343.9 bits (3477), Expect = 0.0e+00
Identity = 726/1449 (50.10%), Postives = 952/1449 (65.70%), Query Frame = 0
Query: 17 ISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGNRKIIINPEF 76
+S KLT+ NYLLW Q+LP +R+ L + G P +TI S+ + + NP +
Sbjct: 20 VSEKLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTI----SDASDRTVTVANPAY 79
Query: 77 TVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQF----------------- 136
W +DQ VL + SS++ EVLS++V +T+ W TL +
Sbjct: 80 GRWIARDQAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALAT 139
Query: 137 ----ASTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDVY 196
AS++A+YF K++ D L A GK ++DEE ++++L GL D++PLVT++ R+D
Sbjct: 140 TKKGASSVAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPI 199
Query: 197 TVSDVYAHMLSYEMR-HLRKGTFEQL-SSANNVNR-ISIRGGANGGRG-SRGRSRQLNSG 256
T D+Y +LSYE R HL+ G+ + SSAN +R + G +GGRG SRGR R G
Sbjct: 200 TPGDLYTQLLSYENRMHLQTGSSSLMQSSANAASRGRGMSWGRSGGRGFSRGRGR----G 259
Query: 257 HGQSRRTVNNPGR-----QPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAENNLKQ 316
G SR + GR + +SS CQ+C + H AL CW+RFD+ Y +
Sbjct: 260 RGPSRGGFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQRSAN 319
Query: 317 AALATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAGLSISHIGNSL 376
+A +G S+ WY DTGATDHIT DL+RLT ++YTGTDQI ANG G++IS+IGN++
Sbjct: 320 SAAHQNG--SNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTGMTISNIGNAI 379
Query: 377 I--SGSSLVLKHILYVPKINKHLISVQRLASDNNAVVEFHPNYFLVKDRVTKKLLLHGRC 436
+ S SL L+ +L+VP +K+LISV RL +DN+ +EFH ++FL+KDR TK +LLHG+C
Sbjct: 380 VPTSSRSLHLRSVLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKC 439
Query: 437 KNGLYVLP--------HNFSQALLTAKLSKEQWHRRLGHPASPITIRILQDNNLAIDTNI 496
++GLY LP HNFS + ++ E WH+RLGHP+ I R++ +NNL +N
Sbjct: 440 RDGLYPLPPHPDLRLKHNFS----STRVPLEHWHKRLGHPSRDIVHRVISNNNLPCLSNN 499
Query: 497 PSSSICNACQLGKAHQLPFGSSQHVSTAPLQLIHTDVWGPSIASVNNSKYYVSFVDDFSR 556
++S+C+AC KAHQLP+ S S+APL LI +DV+GP+I S KYYVSF+DD+S+
Sbjct: 500 STTSVCDACLQAKAHQLPYTISMSQSSAPLMLIFSDVFGPAIDSFGRYKYYVSFIDDYSK 559
Query: 557 YVWIYFLRCKSDVESVFLQFQKHVETMLNTKIRSVQSDWGGEYHRLHNYFKSTGIEHHIS 616
+ WIY LR KSDV F +FQ VE M KI + QSDWGGEY +L+ +FK+ GI H +S
Sbjct: 560 FTWIYLLRHKSDVYKSFCEFQHLVERMFGRKIIAFQSDWGGEYEKLNAHFKTIGIHHQVS 619
Query: 617 CPHTHQQNGLVERKHRHIVETGLALLAQANMPLSYWDEAFNTACFLINRMPSRTIQQDTP 676
CPHTHQQNG ERKHRHIVE GLALLAQ++MPL YWD AF A +LINR PS+TI DTP
Sbjct: 620 CPHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKTIAHDTP 679
Query: 677 LHKLFGKSPDYSMLRVFGCACWPNLRPYNNKKLSFRTTRCIFLGYSSSHKGYKCLNRSTG 736
LHKL G +PDYS LR+FGCACWPNLRPYN KL FR+TRC+FLGYS+ HKG+KCL+ STG
Sbjct: 680 LHKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLDISTG 739
Query: 737 RIYISRDVVFDENIFPFEESKPPNKTTNPHHPVLLPALAKLANFYTENA-----LTDIEP 796
RIYISRDVVFDE++FPF +LLP + N T++A + P
Sbjct: 740 RIYISRDVVFDEHVFPFASLNKNAGVKYTSEVLLLPHDSCGNNMLTDHANNLPGSSSPLP 799
Query: 797 VVSNSHMNDGQTDNIASDNL-------------------------------SGVSLSS-- 856
++ H G ++ S+N +GVS ++
Sbjct: 800 FLA-QHFLQGNSEVPTSNNTAMALPASGPNEVSVPPALVPSSLVPAASPAPTGVSANAEP 859
Query: 857 ---ADNTRSSEEIAE------------YEAESSSINAQNQTHEHVSDQPTEAASQHPMRT 916
AD+ S +A +A SS+ H+ P AA+ RT
Sbjct: 860 APEADSLSSGPPVATESVTGVPDADPLLQAPGSSV-----AHQTPDSAPLSAAAP---RT 919
Query: 917 RLRNNIVQAKQFTDGTIRYSETSRKFASAVTITTPIIETATEPRNLQEAMQHPRWRGAMN 976
RL++ I + KQFTDGT+RY + + TEP ++ EA+ P+WR AM
Sbjct: 920 RLQHGISKPKQFTDGTVRYGNAAARI--------------TEPSSVSEALADPQWRAAME 979
Query: 977 DELSALKRNATWDLVPPKPGINLIDSKWVYKVKRKADGSVERLKARLVAKGFKQRFGVDY 1036
E AL++N TW LVPP NLID KWV+KVK ADGS++RLKARLVAKGFKQ++G+DY
Sbjct: 980 AEFQALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDY 1039
Query: 1037 TDTFSPVIKPSTIRVILSLAVTKGWNMRQVDIQNAFLHGILKEEVYMRQPPGFQDSAKPK 1096
DTFSPV+K STIR++LSLAV++ W++RQ+D+QNAFLHGIL+E VYM+QPPGF D+ P
Sbjct: 1040 DDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGFADTTHP- 1099
Query: 1097 NYICKLKKALYGLKQAPKAWHSRLTGKLIELGFKASVADSSLFILKNREITIYMLIYVDD 1156
NY C L+K+LYGLKQAP+AW+SRL+ KL LGF S AD SLFI IY+L+YVDD
Sbjct: 1100 NYHCHLQKSLYGLKQAPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVDD 1159
Query: 1157 IIIVSSSDQATERLIQKLKIDFAVKDLGGLEYFLGIEVKKTRDGIILSQRRYALDLLKRV 1216
III SS A + ++ KLK DFA+KDLG L YFLGIEV + DG++L Q +YA DLLKRV
Sbjct: 1160 IIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARDLLKRV 1219
Query: 1217 NMEKCKPMSTPMGSAEKLFREQGIPLSAEEQFKYRSTVGALQYLTMTRPDLAFAVNKVCQ 1276
ME CKP+ TP+ ++EKL G LS EE KYRS VGALQYLT+TRPDL++A+N+VCQ
Sbjct: 1220 GMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRVCQ 1279
Query: 1277 YLHTPTDAHWGAVKRILRYVKGTLALGVKIQKS-TMMLSGFSDADWAGCPDDRRSTSGFA 1336
+LH PTD HW AVKRILR ++ T+ LG+ I+ S ++MLS FSDADWAGCPDDR+ST G+A
Sbjct: 1280 FLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLSAFSDADWAGCPDDRKSTGGYA 1339
Query: 1337 VFLGANLISWSSRKQATVSRSSTEAEYKAIANLTAEMIWIKSLLKELGVYQSKAPRLWCD 1372
+FLG NLISW+S+KQ+TVSRSSTEAEYKA+AN TAE+IW++SLL ELG+ + PRLWCD
Sbjct: 1340 LFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCD 1399
BLAST of CmoCh10G002590 vs. ExPASy TrEMBL
Match:
V9GZT4 (Copia-like retrotransposon Hopscotch polyprotein OS=Zea mays OX=4577 GN=gag PE=4 SV=1)
HSP 1 Score: 1340.9 bits (3469), Expect = 0.0e+00
Identity = 718/1433 (50.10%), Postives = 942/1433 (65.74%), Query Frame = 0
Query: 17 ISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGNRKIIINPEF 76
+S KLT+ NYLLW Q+LP +R+ L + G P +TI S+ + + NP +
Sbjct: 20 VSEKLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTI----SDASDRTVTVANPAY 79
Query: 77 TVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQF----------------- 136
W +DQ VL + SS++ EVLS++V +T+ W TL +
Sbjct: 80 GRWIARDQAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALAT 139
Query: 137 ----ASTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDVY 196
AS++A+YF K++ D L A GK ++DEE ++++L GL D++PLVT++ R+D
Sbjct: 140 TKKGASSVAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPI 199
Query: 197 TVSDVYAHMLSYEMR-HLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSRQLNSGHGQ 256
T D+Y +LSYE R HL+ G+ + S+ N R RG + G G RG SR G G
Sbjct: 200 TPGDLYTQLLSYENRMHLQTGSSSLMQSSANA-RSPGRGMSWGRSGGRGFSRGRGRGRGP 259
Query: 257 SRRTVNNPGR-----QPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAENNLKQAAL 316
SR + GR + +SS CQ+C + H AL CW+RFD+ Y + +A
Sbjct: 260 SRGGFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQRSANSAA 319
Query: 317 ATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAGLSISHIGNSLI-- 376
+G S+ WY DTGATDHIT DL+RLT ++YTGTDQI ANG G++IS+IGN+++
Sbjct: 320 HQNG--SNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTGMTISNIGNAIVPT 379
Query: 377 SGSSLVLKHILYVPKINKHLISVQRLASDNNAVVEFHPNYFLVKDRVTKKLLLHGRCKNG 436
S SL L+ +L+VP +K+LISV RL +DN+ +EFH ++FL+KDR TK +LLHG+C++G
Sbjct: 380 SSRSLHLRSVLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDG 439
Query: 437 LYVLP--------HNFSQALLTAKLSKEQWHRRLGHPASPITIRILQDNNLAIDTNIPSS 496
LY LP HNFS + ++ E WH+RLGHP+ I R++ +NNL +N ++
Sbjct: 440 LYPLPPHPDLRLKHNFS----STRVPLEHWHKRLGHPSRDIVHRVISNNNLPCLSNNSTT 499
Query: 497 SICNACQLGKAHQLPFGSSQHVSTAPLQLIHTDVWGPSIASVNNSKYYVSFVDDFSRYVW 556
S+C+AC KAHQLP+ S S+APL LI +DV+GP+I S KYYVSF+DD+S++ W
Sbjct: 500 SVCDACLQAKAHQLPYTISMSQSSAPLMLIFSDVFGPAIDSFGRYKYYVSFIDDYSKFTW 559
Query: 557 IYFLRCKSDVESVFLQFQKHVETMLNTKIRSVQSDWGGEYHRLHNYFKSTGIEHHISCPH 616
IY LR KSDV F +FQ VE M KI + QSDWGGEY +L+ +FK+ GI H +SCPH
Sbjct: 560 IYLLRHKSDVYKSFCEFQHLVERMFGRKIIAFQSDWGGEYEKLNAHFKTIGIHHQVSCPH 619
Query: 617 THQQNGLVERKHRHIVETGLALLAQANMPLSYWDEAFNTACFLINRMPSRTIQQDTPLHK 676
THQQNG ERKHRHIVE GLALLAQ++MPL YWD AF A +LINR PS+TI DTPLHK
Sbjct: 620 THQQNGAAERKHRHIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKTIAHDTPLHK 679
Query: 677 LFGKSPDYSMLRVFGCACWPNLRPYNNKKLSFRTTRCIFLGYSSSHKGYKCLNRSTGRIY 736
L G +PDYS LR+FGCACWPNLRPYN KL FR+TRC+FLGYS+ HKG+KCL+ STGRIY
Sbjct: 680 LTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIY 739
Query: 737 ISRDVVFDENIFPFEESKPPNKTTNPHHPVLLPALAKLANFYTENA-----LTDIEPVVS 796
ISRDVVFDE++FPF +LLP + N T++A + P ++
Sbjct: 740 ISRDVVFDEHVFPFASLNKNAGVKYTSEVLLLPHDSCGNNMLTDHANNLPGSSSPLPFLA 799
Query: 797 NSHMNDGQTDNIASDNL-------------------------------SGVSLSS----- 856
H G ++ S+N +GVS ++
Sbjct: 800 -QHFLQGNSEVPTSNNTAMALPASGPNEVSVPPALVPSSLVPAASPAPTGVSANAEPAPE 859
Query: 857 ADNTRSSEEIAE------------YEAESSSINAQNQTHEHVSDQPTEAASQHPMRTRLR 916
AD+ S +A +A SS+ H+ P AA+ RTRL+
Sbjct: 860 ADSLSSGPPVATESVTGVPDADPLLQAPGSSV-----AHQTPDSAPLSAAAP---RTRLQ 919
Query: 917 NNIVQAKQFTDGTIRYSETSRKFASAVTITTPIIETATEPRNLQEAMQHPRWRGAMNDEL 976
+ I + KQFTDGT+RY + + TEP ++ EA+ P+WR AM E
Sbjct: 920 HGISKPKQFTDGTVRYGNAAARI--------------TEPSSVSEALADPQWRAAMEAEF 979
Query: 977 SALKRNATWDLVPPKPGINLIDSKWVYKVKRKADGSVERLKARLVAKGFKQRFGVDYTDT 1036
AL++N TW LVPP NLID KWV+KVK ADGS++RLKARLVAKGFKQ++G+DY DT
Sbjct: 980 QALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDYDDT 1039
Query: 1037 FSPVIKPSTIRVILSLAVTKGWNMRQVDIQNAFLHGILKEEVYMRQPPGFQDSAKPKNYI 1096
FSPV+K STIR++LSLAV++ W++RQ+D+QNAFLHGIL+E VYM+QPPGF D+ P NY
Sbjct: 1040 FSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGFADTTHP-NYH 1099
Query: 1097 CKLKKALYGLKQAPKAWHSRLTGKLIELGFKASVADSSLFILKNREITIYMLIYVDDIII 1156
C L+K+LYGLKQ P+AW+SRL+ KL LGF S AD SLFI IY+L+YVDDIII
Sbjct: 1100 CHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVDDIII 1159
Query: 1157 VSSSDQATERLIQKLKIDFAVKDLGGLEYFLGIEVKKTRDGIILSQRRYALDLLKRVNME 1216
SS A + ++ KLK DFA+KDLG L YFLGIEV + DG++L Q +YA DLLKRV ME
Sbjct: 1160 TGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARDLLKRVGME 1219
Query: 1217 KCKPMSTPMGSAEKLFREQGIPLSAEEQFKYRSTVGALQYLTMTRPDLAFAVNKVCQYLH 1276
CKP+ TP+ ++EKL G LS EE KYRS VGALQYLT+TRPDL++A+N+VCQ+LH
Sbjct: 1220 CCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRVCQFLH 1279
Query: 1277 TPTDAHWGAVKRILRYVKGTLALGVKIQKS-TMMLSGFSDADWAGCPDDRRSTSGFAVFL 1336
PTD HW AVKRILR ++ T+ LG+ I+ S ++MLS FSDADWAGCPDDR+ST G+A+FL
Sbjct: 1280 APTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLSAFSDADWAGCPDDRKSTGGYALFL 1339
Query: 1337 GANLISWSSRKQATVSRSSTEAEYKAIANLTAEMIWIKSLLKELGVYQSKAPRLWCDNLG 1359
G NLISW+S+KQ+TVSRSSTEAEYKA+AN TAE+IW++SLL ELG+ + PRLWCDNLG
Sbjct: 1340 GPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCDNLG 1399
BLAST of CmoCh10G002590 vs. ExPASy TrEMBL
Match:
Q75HT9 (Putative polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=B1003C08.12 PE=4 SV=1)
HSP 1 Score: 1336.6 bits (3458), Expect = 0.0e+00
Identity = 710/1443 (49.20%), Postives = 946/1443 (65.56%), Query Frame = 0
Query: 8 MSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGN 67
+S+P IS KLT++N+ LW+ QIL LR L + + AP+ I E ++
Sbjct: 10 ISNPLFGLQISDKLTKQNHPLWAAQILTTLRGAQLEEHIVSTTAAPAAEIEKEDGDKDKK 69
Query: 68 RKIII-NPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFA------ 127
KI+I NPE+ W+ QDQ VL I SS++ EVL + G TA +AW ++ F+
Sbjct: 70 TKIVIPNPEYKTWFVQDQQVLGFIFSSLSREVLQQVAGARTAAQAWNMIDDMFSCKSKAG 129
Query: 128 ------STIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSI--TTRT 187
++++Y K++ L D +AA GK +++EEL+AY++ GL ++D V + T R
Sbjct: 130 TINKGPMSMSEYIAKMRSLADKMAATGKPLDEEELVAYIINGLDSEFDAAVEGLMATARI 189
Query: 188 DVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSRQ--LNS 247
++S VY+ +LSYE R +R +SAN NR RGG G+RG R
Sbjct: 190 APVSISHVYSQLLSYENR-IRIRQAYLTTSANAANRGGGRGGRGSSTGNRGGGRGGFGRG 249
Query: 248 GHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAENNLKQAALA 307
GHG+ + + GR + + VCQ+C K H A CWHR+D +Y + L A A
Sbjct: 250 GHGRGAPSGASQGRGRG---NDTRPVCQVCHKRGHVASDCWHRYDDSYVPDEKLGGA--A 309
Query: 308 TSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAGLSISHIGNSLISGS 367
T Y DTNWYVDTGATDHIT L++LTT+ERY GTDQI A+G G SI H+G++++
Sbjct: 310 TYAYGVDTNWYVDTGATDHITGQLDKLTTKERYKGTDQIHTASGEGTSIKHVGHAIVPTP 369
Query: 368 S--LVLKHILYVPKINKHLISVQRLASDNNAVVEFHPNYFLVKDRVTKKLLLHGRCKNGL 427
S L LK++L+VP+ K+L+SV +L +DN A +E H YFL+KD+ T++ +L G C+ GL
Sbjct: 370 SHPLHLKNVLHVPEAAKNLVSVHKLVADNYAFLEIHGKYFLIKDKATRRTILEGPCRRGL 429
Query: 428 YVLPHNFS-QALLTAKLSKEQWHRRLGHPASPITIRILQDNNLAIDTNIPSSSICNACQL 487
Y LP S + A S +WH RLGHP+ PI +RIL N L +N + S+C+ACQ
Sbjct: 430 YPLPARSSLRQAFVATPSFVRWHGRLGHPSKPIVLRILSQNKLPCLSNSVNESVCDACQQ 489
Query: 488 GKAHQLPFGSSQHVSTAPLQLIHTDVWGPSIASVNNSKYYVSFVDDFSRYVWIYFLRCKS 547
K HQLPF S VS PL+LIH+DVWGP+ SV KYYVSF+DD+S++VWIYFL+ KS
Sbjct: 490 AKCHQLPFPRSTSVSNNPLELIHSDVWGPASESVGAKKYYVSFIDDYSKFVWIYFLKHKS 549
Query: 548 DVESVFLQFQKHVETMLNTKIRSVQSDWGGEYHRLHNYFKSTGIEHHISCPHTHQQNGLV 607
+V F +FQK VE + KI S+Q+DWGGEY +LH +F GI HH+SCPHTHQQNG V
Sbjct: 550 EVFQKFHEFQKLVERQFDRKILSMQTDWGGEYLKLHTFFNEIGISHHVSCPHTHQQNGAV 609
Query: 608 ERKHRHIVETGLALLAQANMPLSYWDEAFNTACFLINRMPSRTIQQDTPLHKLFGKSPDY 667
ERKHRHIVE GL+LLA A+MPL +WDEAF A +LINR+PS+ I+ DTPL +LF ++PDY
Sbjct: 610 ERKHRHIVEVGLSLLAHASMPLKFWDEAFLAATYLINRLPSKVIKFDTPLERLFKQTPDY 669
Query: 668 SMLRVFGCACWPNLRPYNNKKLSFRTTRCIFLGYSSSHKGYKCLNRSTGRIYISRDVVFD 727
LR FGCACWPNLRPYN KL FR+ +C+FLG+S+ HKG+KCL+ STGR+Y+SRDV FD
Sbjct: 670 KSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNIHKGFKCLDVSTGRVYVSRDVTFD 729
Query: 728 ENIFPFEESKPPNKTTNPHHPVLLPALA---------------KLANFYTENALTDIEPV 787
E +FPF P LLP L N NA TDI
Sbjct: 730 EQVFPFANLHPNAGARLRAEISLLPPTLINEKTSDQGGEEHHDHLFNISMPNA-TDISCA 789
Query: 788 VSNSHMND----------GQTDNIASDNL---------------------------SGVS 847
S ++N G ++A ++ SG+
Sbjct: 790 ESPRNVNSDIPGAFGRVHGANGDLAGESASDSASVQAQLQRQASGSATQGESEQQRSGIQ 849
Query: 848 LSSADNTRSSEEIA---EYEAESSSINAQNQTHEHVSDQPTEAASQHPM---RTRLRNNI 907
+ A + +S A A +SS Q+H+ S P+E+A + +TRL++ I
Sbjct: 850 PARATSPAASPTAAPPSPARAVASSSGGAQQSHQPGSSAPSESAQLSEVIRPKTRLQSGI 909
Query: 908 VQAKQFTDGTIRYSETSRKFASAVTITTPIIETATEPRNLQEAMQHPRWRGAMNDELSAL 967
+ K +TDGT+RYS ++ EP+ L EA+ W+ AM+ E AL
Sbjct: 910 RKEKIYTDGTVRYS---------------CFTSSGEPQTLHEALGDKNWKEAMDSEYQAL 969
Query: 968 KRNATWDLVPPKPGINLIDSKWVYKVKRKADGSVERLKARLVAKGFKQRFGVDYTDTFSP 1027
+N TW LVP K G N+ID KWVYKVKRKADGS++R KAR+VAKGFKQR+G+DY DTF+P
Sbjct: 970 MKNKTWHLVPSKKGQNIIDCKWVYKVKRKADGSLDRYKARVVAKGFKQRYGIDYEDTFNP 1029
Query: 1028 VIKPSTIRVILSLAVTKGWNMRQVDIQNAFLHGILKEEVYMRQPPGFQDSAKPKNYICKL 1087
V+K +TIR ILS+A+++GW +RQ+D+QNAFLHG+L+E+V+MRQPPG++ + Y+CKL
Sbjct: 1030 VVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGYE---QKDGYVCKL 1089
Query: 1088 KKALYGLKQAPKAWHSRLTGKLIELGFKASVADSSLFILKNREITIYMLIYVDDIIIVSS 1147
KALYGLKQAP+AW+SRL+ KL ELGFK+S +D+SLF ++ ++ML+YVDDII+ SS
Sbjct: 1090 DKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVAMFMLVYVDDIIVASS 1149
Query: 1148 SDQATERLIQKLKIDFAVKDLGGLEYFLGIEVKKTRDGIILSQRRYALDLLKRVNMEKCK 1207
S AT L++ L +FA+KDLG L YFLGIEVK+ +GI+L+Q +YA+D+LKRVNM CK
Sbjct: 1150 SIDATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRVNMSDCK 1209
Query: 1208 PMSTPMGSAEKLFREQGIPLSAEEQFKYRSTVGALQYLTMTRPDLAFAVNKVCQYLHTPT 1267
++TP+ +EKL +G P E+ +YRS VGALQYLT+TRPDL+F+VNKVCQYLH PT
Sbjct: 1210 AVNTPLSISEKLSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAPT 1269
Query: 1268 DAHWGAVKRILRYVKGTLALGVKIQKS-TMMLSGFSDADWAGCPDDRRSTSGFAVFLGAN 1327
HW A KRILRY+K T+ LG+KI KS ++++S FSDADWAGC DDR ST GFAVF+G N
Sbjct: 1270 TKHWAAAKRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRHSTGGFAVFIGPN 1329
Query: 1328 LISWSSRKQATVSRSSTEAEYKAIANLTAEMIWIKSLLKELGVYQSKAPRLWCDNLGATY 1372
L+SWS+RKQATVSRSSTEAEYKA+AN+TAE++WI++LL ELG+ K ++WCDN+GA Y
Sbjct: 1330 LVSWSARKQATVSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAPKIAKVWCDNIGAKY 1389
BLAST of CmoCh10G002590 vs. ExPASy TrEMBL
Match:
Q75G45 (Putative polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0043H23.10 PE=4 SV=1)
HSP 1 Score: 1336.6 bits (3458), Expect = 0.0e+00
Identity = 710/1443 (49.20%), Postives = 946/1443 (65.56%), Query Frame = 0
Query: 8 MSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGN 67
+S+P IS KLT++N+ LW+ QIL LR L + + AP+ I E ++
Sbjct: 10 ISNPLFGLQISDKLTKQNHPLWAAQILTTLRGAQLEEHIVSTTAAPAAEIEKEDGDKDKK 69
Query: 68 RKIII-NPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFA------ 127
KI+I NPE+ W+ QDQ VL I SS++ EVL + G TA +AW ++ F+
Sbjct: 70 TKIVIPNPEYKTWFVQDQQVLGFIFSSLSREVLQQVAGARTAAQAWNMIDDMFSCKSKAG 129
Query: 128 ------STIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSI--TTRT 187
++++Y K++ L D +AA GK +++EEL+AY++ GL ++D V + T R
Sbjct: 130 TINKGPMSMSEYIAKMRSLADKMAATGKPLDEEELVAYIINGLDSEFDAAVEGLMATARI 189
Query: 188 DVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSRQ--LNS 247
++S VY+ +LSYE R +R +SAN NR RGG G+RG R
Sbjct: 190 APVSISHVYSQLLSYENR-IRIRQAYLTTSANAANRGGGRGGRGSSTGNRGGGRGGFGRG 249
Query: 248 GHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAENNLKQAALA 307
GHG+ + + GR + + VCQ+C K H A CWHR+D +Y + L A A
Sbjct: 250 GHGRGAPSGASQGRGRG---NDTRPVCQVCHKRGHVASDCWHRYDDSYVPDEKLGGA--A 309
Query: 308 TSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAGLSISHIGNSLISGS 367
T Y DTNWYVDTGATDHIT L++LTT+ERY GTDQI A+G G SI H+G++++
Sbjct: 310 TYAYGVDTNWYVDTGATDHITGQLDKLTTKERYKGTDQIHTASGEGTSIKHVGHAIVPTP 369
Query: 368 S--LVLKHILYVPKINKHLISVQRLASDNNAVVEFHPNYFLVKDRVTKKLLLHGRCKNGL 427
S L LK++L+VP+ K+L+SV +L +DN A +E H YFL+KD+ T++ +L G C+ GL
Sbjct: 370 SHPLHLKNVLHVPEAAKNLVSVHKLVADNYAFLEIHGKYFLIKDKATRRTILEGPCRRGL 429
Query: 428 YVLPHNFS-QALLTAKLSKEQWHRRLGHPASPITIRILQDNNLAIDTNIPSSSICNACQL 487
Y LP S + A S +WH RLGHP+ PI +RIL N L +N + S+C+ACQ
Sbjct: 430 YPLPARSSLRQAFVATPSFVRWHGRLGHPSKPIVLRILSQNKLPCLSNSVNESVCDACQQ 489
Query: 488 GKAHQLPFGSSQHVSTAPLQLIHTDVWGPSIASVNNSKYYVSFVDDFSRYVWIYFLRCKS 547
K HQLPF S VS PL+LIH+DVWGP+ SV KYYVSF+DD+S++VWIYFL+ KS
Sbjct: 490 AKCHQLPFPRSTSVSNNPLELIHSDVWGPASESVGAKKYYVSFIDDYSKFVWIYFLKHKS 549
Query: 548 DVESVFLQFQKHVETMLNTKIRSVQSDWGGEYHRLHNYFKSTGIEHHISCPHTHQQNGLV 607
+V F +FQK VE + KI S+Q+DWGGEY +LH +F GI HH+SCPHTHQQNG V
Sbjct: 550 EVFQKFHEFQKLVERQFDRKILSMQTDWGGEYLKLHTFFNEIGISHHVSCPHTHQQNGAV 609
Query: 608 ERKHRHIVETGLALLAQANMPLSYWDEAFNTACFLINRMPSRTIQQDTPLHKLFGKSPDY 667
ERKHRHIVE GL+LLA A+MPL +WDEAF A +LINR+PS+ I+ DTPL +LF ++PDY
Sbjct: 610 ERKHRHIVEVGLSLLAHASMPLKFWDEAFLAATYLINRLPSKVIKFDTPLERLFKQTPDY 669
Query: 668 SMLRVFGCACWPNLRPYNNKKLSFRTTRCIFLGYSSSHKGYKCLNRSTGRIYISRDVVFD 727
LR FGCACWPNLRPYN KL FR+ +C+FLG+S+ HKG+KCL+ STGR+Y+SRDV FD
Sbjct: 670 KSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNIHKGFKCLDVSTGRVYVSRDVTFD 729
Query: 728 ENIFPFEESKPPNKTTNPHHPVLLPALA---------------KLANFYTENALTDIEPV 787
E +FPF P LLP L N NA TDI
Sbjct: 730 EQVFPFANLHPNAGARLRAEISLLPPTLINEKTSDQGGEEHHDHLFNISMPNA-TDISCA 789
Query: 788 VSNSHMND----------GQTDNIASDNL---------------------------SGVS 847
S ++N G ++A ++ SG+
Sbjct: 790 ESPRNVNSDIPGAFGRVHGANGDLAGESASDSASVQAQLQRQASGSATQGESEQQRSGIQ 849
Query: 848 LSSADNTRSSEEIA---EYEAESSSINAQNQTHEHVSDQPTEAASQHPM---RTRLRNNI 907
+ A + +S A A +SS Q+H+ S P+E+A + +TRL++ I
Sbjct: 850 PARATSPAASPTAAPPSPARAVASSSGGAQQSHQPGSSAPSESAQLSEVIRPKTRLQSGI 909
Query: 908 VQAKQFTDGTIRYSETSRKFASAVTITTPIIETATEPRNLQEAMQHPRWRGAMNDELSAL 967
+ K +TDGT+RYS ++ EP+ L EA+ W+ AM+ E AL
Sbjct: 910 RKEKIYTDGTVRYS---------------CFTSSGEPQTLHEALGDKNWKEAMDSEYQAL 969
Query: 968 KRNATWDLVPPKPGINLIDSKWVYKVKRKADGSVERLKARLVAKGFKQRFGVDYTDTFSP 1027
+N TW LVP K G N+ID KWVYKVKRKADGS++R KAR+VAKGFKQR+G+DY DTF+P
Sbjct: 970 MKNKTWHLVPSKKGQNIIDCKWVYKVKRKADGSLDRYKARVVAKGFKQRYGIDYEDTFNP 1029
Query: 1028 VIKPSTIRVILSLAVTKGWNMRQVDIQNAFLHGILKEEVYMRQPPGFQDSAKPKNYICKL 1087
V+K +TIR ILS+A+++GW +RQ+D+QNAFLHG+L+E+V+MRQPPG++ + Y+CKL
Sbjct: 1030 VVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGYE---QKDGYVCKL 1089
Query: 1088 KKALYGLKQAPKAWHSRLTGKLIELGFKASVADSSLFILKNREITIYMLIYVDDIIIVSS 1147
KALYGLKQAP+AW+SRL+ KL ELGFK+S +D+SLF ++ ++ML+YVDDII+ SS
Sbjct: 1090 DKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVAMFMLVYVDDIIVASS 1149
Query: 1148 SDQATERLIQKLKIDFAVKDLGGLEYFLGIEVKKTRDGIILSQRRYALDLLKRVNMEKCK 1207
S AT L++ L +FA+KDLG L YFLGIEVK+ +GI+L+Q +YA+D+LKRVNM CK
Sbjct: 1150 SIDATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRVNMSDCK 1209
Query: 1208 PMSTPMGSAEKLFREQGIPLSAEEQFKYRSTVGALQYLTMTRPDLAFAVNKVCQYLHTPT 1267
++TP+ +EKL +G P E+ +YRS VGALQYLT+TRPDL+F+VNKVCQYLH PT
Sbjct: 1210 AVNTPLSISEKLSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAPT 1269
Query: 1268 DAHWGAVKRILRYVKGTLALGVKIQKS-TMMLSGFSDADWAGCPDDRRSTSGFAVFLGAN 1327
HW A KRILRY+K T+ LG+KI KS ++++S FSDADWAGC DDR ST GFAVF+G N
Sbjct: 1270 TKHWAAAKRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRHSTGGFAVFIGPN 1329
Query: 1328 LISWSSRKQATVSRSSTEAEYKAIANLTAEMIWIKSLLKELGVYQSKAPRLWCDNLGATY 1372
L+SWS+RKQATVSRSSTEAEYKA+AN+TAE++WI++LL ELG+ K ++WCDN+GA Y
Sbjct: 1330 LVSWSARKQATVSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAPKIAKVWCDNIGAKY 1389
BLAST of CmoCh10G002590 vs. ExPASy TrEMBL
Match:
A0A3L6Q0W7 (Putative polyprotein OS=Panicum miliaceum OX=4540 GN=C2845_PM17G04270 PE=4 SV=1)
HSP 1 Score: 1319.7 bits (3414), Expect = 0.0e+00
Identity = 690/1437 (48.02%), Postives = 937/1437 (65.21%), Query Frame = 0
Query: 1 MSIPNNTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVE 60
M+ ++T ++P ++ KL++ N+ LW Q+L +R G ++G AP I +
Sbjct: 1 MASSSSTTTNPFFGFQVTEKLSKTNHTLWKAQVLAAIRGACYEGHINGKTKAPDAEIVEK 60
Query: 61 PSEETGNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFA 120
++ G NP F WY +DQ +L + SS ++V + + TA +AW +E+ F+
Sbjct: 61 KAD--GTTVTNPNPAFEAWYARDQQILWFLLSSAGKDVQAQINTAETAGQAWSAVEKMFS 120
Query: 121 S---------------------TIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGP 180
+ +I DY K+K D LAA+GK ++DEEL+A++ GL
Sbjct: 121 AQTRAKTMNVRLALTTTKKGTMSITDYVSKMKGFADELAAVGKALDDEELVAHICNGLDA 180
Query: 181 DYDPLVTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRG-GANGG 240
DY+P+VTS+TTR D ++ D+YA +LS+E R + AN RG G G
Sbjct: 181 DYNPVVTSVTTRLDPISILDLYAQLLSFETRLELQDGGSYAHVANRGRGHGNRGSGTARG 240
Query: 241 RGSRGRSRQLNSGHGQSRRTVNNPGRQP---SKTQSSSGIVCQICGKPNHDALQCWHRFD 300
RG RGR + G+G ++ N GRQP + S +CQIC K H A +CWHRFD
Sbjct: 241 RGQRGRGQARGRGNGAPKQ--RNGGRQPRPDGASGSDDPPLCQICFKTGHRASRCWHRFD 300
Query: 301 QAYQAENNLKQAALATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGA 360
+ Y E AA+A + Y DTNWY DTGATDHIT+DL +LT RE+Y G DQI A+G+
Sbjct: 301 ENYVPEERHINAAIAMNAYNVDTNWYTDTGATDHITSDLNKLTMREKYHGNDQIHTASGS 360
Query: 361 GLSISHIGNSLI--SGSSLVLKHILYVPKINKHLISVQRLASDNNAVVEFHPNYFLVKDR 420
G+ I ++G++ + SL L ++L+VPK K+L+SV RLA DN+A +EFHP++FL+KD+
Sbjct: 361 GMEIKYVGHTTVPTQSRSLHLNNVLHVPKAAKNLVSVHRLAKDNSAFIEFHPDFFLIKDQ 420
Query: 421 VTKKLLLHGRCKNGLYVLPHNFS--QALLTAKLSKEQWHRRLGHPASPITIRILQDNNLA 480
T+ +L G C+ GLY LP + S QA K + +WH RLGHP+ PI +++ NNL+
Sbjct: 421 ATRNTILKGPCRRGLYPLPVHSSVKQANAVDKPTVSRWHNRLGHPSFPIVTKVIDSNNLS 480
Query: 481 IDTNIPSSSICNACQLGKAHQLPFGSSQHVSTAPLQLIHTDVWGPSIASVNNSKYYVSFV 540
+ S+C+ACQ K+HQLP+ S ++ PL+L+H+DVWGP++ SV +YYVSFV
Sbjct: 481 CSSVSNKKSVCDACQQAKSHQLPYKRSVSSTSFPLELVHSDVWGPAVESVGRKRYYVSFV 540
Query: 541 DDFSRYVWIYFLRCKSDVESVFLQFQKHVETMLNTKIRSVQSDWGGEYHRLHNYFKSTGI 600
DDFSR+ WIYFL+ KS+V F +FQK VE + KI ++Q+DWGGEY +L+++F GI
Sbjct: 541 DDFSRFTWIYFLKYKSEVFQKFHEFQKIVERQFDRKILTMQTDWGGEYQKLNSFFSQVGI 600
Query: 601 EHHISCPHTHQQNGLVERKHRHIVETGLALLAQANMPLSYWDEAFNTACFLINRMPSRTI 660
HH+SCPH HQQNG++ERKHRHIVE GL+LLA A+MPL +WDEAF A FLINR+PS+ I
Sbjct: 601 IHHVSCPHAHQQNGVIERKHRHIVEVGLSLLAHASMPLKFWDEAFMAATFLINRLPSKVI 660
Query: 661 QQDTPLHKLFGKSPDYSMLRVFGCACWPNLRPYNNKKLSFRTTRCIFLGYSSSHKGYKCL 720
TP +L + P+Y LR FGCACWPNLRPYN KL R+ +C FLGYS+ HKGYKCL
Sbjct: 661 DNQTPFERLLKQKPEYFSLRTFGCACWPNLRPYNRHKLELRSKQCAFLGYSNLHKGYKCL 720
Query: 721 NRSTGRIYISRDVVFDENIFPFEESK--------------PPN---------------KT 780
+ +GR+YISRDV+FDE +FPF PP +
Sbjct: 721 DIQSGRVYISRDVIFDEEVFPFSTLHSNAGARLRAEIALLPPGLVPSLEMEQLVDHVFDS 780
Query: 781 TNPHHPVLLPALAKLANFY---TENALTDIEPVVSNSHMNDGQTDNIASDNLSGVSLSS- 840
TNP + A + TE PV S + D + G + +S
Sbjct: 781 TNPTNDGAHAACDNRGSSLPPNTEPEAVSTSPVRQPSGVTRPADDVVPPATSPGPAPTSH 840
Query: 841 -ADNTRSSEEIAEYEAESSSINAQNQTHEHVSDQPTEAASQHP--MRTRLRNNIVQAKQF 900
A T ++ A + + P+ A++ P RTRLR+ I + K +
Sbjct: 841 PAAGTGGTDADINSSAAADGTPVPAPEAGPPAAGPSTVATETPPRPRTRLRDGIRKPKVY 900
Query: 901 TDGTIRYSETSRKFASAVTITTPIIETATEPRNLQEAMQHPRWRGAMNDELSALKRNATW 960
TDGT+RY + EP++L EA+ W+ AM+ E AL N TW
Sbjct: 901 TDGTVRYG---------------CFTASGEPQSLDEALNSRDWKLAMDAEYDALINNKTW 960
Query: 961 DLVPPKPGINLIDSKWVYKVKRKADGSVERLKARLVAKGFKQRFGVDYTDTFSPVIKPST 1020
LVPPK GIN+ID KWVYKVKRK+DGS++R KARLVAKGF+QR+G+DY DTFSPV+KP+T
Sbjct: 961 HLVPPKKGINVIDCKWVYKVKRKSDGSLDRYKARLVAKGFRQRYGIDYEDTFSPVVKPAT 1020
Query: 1021 IRVILSLAVTKGWNMRQVDIQNAFLHGILKEEVYMRQPPGFQDSAKPKNYICKLKKALYG 1080
IR IL +AV++GW++R++D+QNAFLHG L+E+VYM+QPPG+QD +K YICKL KALYG
Sbjct: 1021 IRTILFVAVSRGWSLRELDVQNAFLHGYLEEDVYMKQPPGYQDKSK-NGYICKLDKALYG 1080
Query: 1081 LKQAPKAWHSRLTGKLIELGFKASVADSSLFILKNREITIYMLIYVDDIIIVSSSDQATE 1140
LK+AP+AW+SRL+ KL +LGFKAS AD+SLF + IY+LIYVDDII+ SS+ +AT
Sbjct: 1081 LKEAPRAWYSRLSNKLCQLGFKASKADTSLFYYNKGTVIIYILIYVDDIIVASSTQEATA 1140
Query: 1141 RLIQKLKIDFAVKDLGGLEYFLGIEVKKTRDGIILSQRRYALDLLKRVNMEKCKPMSTPM 1200
L+Q L+ +FA+KDLG L +FLGIEVKK +GI+L+Q +YA D+L+R +M +CKP+S+P+
Sbjct: 1141 CLLQDLRKEFALKDLGDLHFFLGIEVKKINNGILLTQEKYAKDVLQRAHMMECKPVSSPL 1200
Query: 1201 GSAEKLFREQGIPLSAEEQFKYRSTVGALQYLTMTRPDLAFAVNKVCQYLHTPTDAHWGA 1260
++EKL +G PL ++ YRS VG LQYL +TRPD++FAVNKVCQYLH PT HW
Sbjct: 1201 STSEKLSAHEGDPLGPQDATTYRSIVGGLQYLILTRPDISFAVNKVCQYLHAPTTVHWAT 1260
Query: 1261 VKRILRYVKGTLALGVKIQKS-TMMLSGFSDADWAGCPDDRRSTSGFAVFLGANLISWSS 1320
VKRILRY+K T+ +G+KI KS ++++S FSDADWAG DDRRST GFAVFLG+NLISWS+
Sbjct: 1261 VKRILRYLKHTMEIGLKICKSPSLLVSAFSDADWAGDQDDRRSTGGFAVFLGSNLISWSA 1320
Query: 1321 RKQATVSRSSTEAEYKAIANLTAEMIWIKSLLKELGVYQSKAPRLWCDNLGATYLTSNPV 1372
RKQ+TVSRSSTEAEYKA+AN TAE++WI++LL ELG+ K +LWCDN+GA YL++NPV
Sbjct: 1321 RKQSTVSRSSTEAEYKAVANATAEVMWIQTLLYELGIQAPKKAKLWCDNIGAKYLSANPV 1380
BLAST of CmoCh10G002590 vs. NCBI nr
Match:
KAG8087752.1 (hypothetical protein GUJ93_ZPchr0010g8288 [Zizania palustris])
HSP 1 Score: 1357.8 bits (3513), Expect = 0.0e+00
Identity = 713/1389 (51.33%), Postives = 952/1389 (68.54%), Query Frame = 0
Query: 33 ILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGNRKIIINPEFTVWYPQDQLVLSLINS 92
++P L S NL+G+ DGS AP + I+V P+ E +++ NP F W QDQ+V+S I S
Sbjct: 1 MIPCLMSYNLMGYADGSKVAPPKVISV-PATEEAEAQLLSNPAFIAWQQQDQVVVSGIRS 60
Query: 93 SVTEEVLSTMVGITTAREAWITLERQFAS---------------------TIADYFRKVK 152
S++E+VL ++ T+ + W LER FAS + DYF K+K
Sbjct: 61 SLSEDVLGHVLFRHTSADIWGELERMFASRSRAKAVQVRIQLANLKRNNMPVVDYFHKIK 120
Query: 153 HLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDVYTVSDVYAHMLSYEM-- 212
++ DTL+A G + +E++++Y+L GLGP Y+ LV S+ ++ ++ D+Y++++S+E
Sbjct: 121 NMADTLSATGSPLAEEDIVSYILAGLGPRYESLVASMAVHSEPISLGDLYSYLVSHEALI 180
Query: 213 -RHLRKGTFEQ-LSSANNVNR-ISIRGGANGGRG----SRGRSRQLNSGHGQSRRTVN-N 272
++ +G + +SSAN V+R GG GGRG RGR R G Q N N
Sbjct: 181 EQNASEGEQQHFMSSANQVSRGYQGAGGYQGGRGRGNSGRGRGRGRIGGRVQGTGGGNFN 240
Query: 273 PGRQPSKTQSSSGI---------VCQICGKPNHDALQCWHRFDQAYQAENNLKQAALATS 332
G+Q + + CQIC K HDAL CW+R+ + Y E++ A
Sbjct: 241 AGQQSHRNNYRNNTQGQARPPLPTCQICNKRGHDALNCWNRYSEDYPPEDHNAHA----- 300
Query: 333 GYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAGLSISHIGNSLISGSS- 392
Y DTNWY+D+GATDHIT+D++RL R Y G +Q+QVANGAGL I H G++ ISGSS
Sbjct: 301 -YQVDTNWYMDSGATDHITSDMQRLNVRSTYNGAEQVQVANGAGLPILHTGHTSISGSSS 360
Query: 393 -LVLKHILYVPKINKHLISVQRLASDNNAVVEFHPNYFLVKDRVTKKLLLHGRCKNGLYV 452
L L +IL+VP I+KHL+SV +LA DNNA +EFHP F VKD+ T+++L HG CK GLY
Sbjct: 361 PLKLNNILHVPNISKHLVSVHKLAVDNNAYIEFHPTSFFVKDQATQRVLHHGPCKGGLYP 420
Query: 453 LPHNFS-----QALLTAKLSKEQWHRRLGHPASPITIRILQDNNLAIDTNIPSSSICNAC 512
L + S L +K+ + WHRRLGHP+S I +L+ +L + S +C+AC
Sbjct: 421 LASSASTPLPRSILSASKVDQALWHRRLGHPSSSIASSVLE--SLKLFPLNKESHVCDAC 480
Query: 513 QLGKAHQLPFGSSQHVSTAPLQLIHTDVWGPSIASVNNSKYYVSFVDDFSRYVWIYFLRC 572
Q K+H+LPF SS VST+PL+L+H+DVWGP+I+SV+ KYYV F+DDFSR+ W+Y L+
Sbjct: 481 QQAKSHRLPFSSSSRVSTSPLELVHSDVWGPTISSVSGHKYYVIFIDDFSRFTWLYLLKH 540
Query: 573 KSDVESVFLQFQKHVETMLNTKIRSVQSDWGGEYHRLHNYFKSTGIEHHISCPHTHQQNG 632
KSDVE F+QF+ E LN KI++VQSD GGEY +LH+ F S GI H +SCPHT QQNG
Sbjct: 541 KSDVEFAFIQFKHLAENQLNAKIKAVQSDGGGEYVKLHSLFVSAGITHRVSCPHTSQQNG 600
Query: 633 LVERKHRHIVETGLALLAQANMPLSYWDEAFNTACFLINRMPSRTIQQDTPLHKLFGKSP 692
+ ERKHRH+VETGLALLAQ+++PL +WDEAF +AC+LINRMPSR +P+ +LF K
Sbjct: 601 VAERKHRHLVETGLALLAQSSIPLRFWDEAFLSACYLINRMPSRVTHAQSPIERLFKKPV 660
Query: 693 DYSMLRVFGCACWPNLRPYNNKKLSFRTTRCIFLGYSSSHKGYKCLNRSTGRIYISRDVV 752
DYS+LRVFGCACWP LRPY ++K+ FR+TRC+FLGYS HKGYKCL+ TGRIYISRDV
Sbjct: 661 DYSLLRVFGCACWPYLRPYRSRKIEFRSTRCVFLGYSGKHKGYKCLHIPTGRIYISRDVT 720
Query: 753 FDENIFPFEESKPPNKTTNPHHPVLLPALAKLANFYTENALTDIEPVVSNSHMNDGQTDN 812
FDE IFPF ++ + T + + + +L++ + + +EPV+ H+ Q N
Sbjct: 721 FDERIFPFADTSTSDSTPSTNPTDKPGSTIQLSS----PSHSTLEPVLDYHHV---QRAN 780
Query: 813 IASDNLSGVSLSSADNTRSSEEIAEYEAESSSINAQNQTHEHVSDQPTEAASQHPMR--T 872
+ + + + D+T +++ + E+ S + +S + A Q R T
Sbjct: 781 PVLFSTNDMPCGAFDDTGAADLDSPTTGETLSPAVVDDASGMISQEDPSAPPQLTSRPTT 840
Query: 873 RLRNNIVQAKQFTDGTIRYSETSRKFASAVTITTPIIETATEPRNLQEAMQHPRWRGAMN 932
RL + I + K+FTDGT+RY R F +++++ EP + EA + P WR AM
Sbjct: 841 RLSHGISKPKEFTDGTVRYPLNKRAFLASLSL------CPAEPVSYAEAAKFPEWRNAMT 900
Query: 933 DELSALKRNATWDLVPPKPGINLIDSKWVYKVKRKADGSVERLKARLVAKGFKQRFGVDY 992
E AL RN TW L+P + N++ +W++KVK KADG+++R KARLVAKGF QR G+DY
Sbjct: 901 AEYDALMRNKTWHLIPREKHHNVVGCRWIFKVKHKADGTLDRYKARLVAKGFTQREGIDY 960
Query: 993 TDTFSPVIKPSTIRVILSLAVTKGWNMRQVDIQNAFLHGILKEEVYMRQPPGFQDSAKPK 1052
DTFSPV+KP+T+R++LSLAV++GW++RQ+DIQNAFLHG L EEVYM+QPPGF++S P+
Sbjct: 961 GDTFSPVVKPTTVRLVLSLAVSRGWHLRQIDIQNAFLHGELTEEVYMQQPPGFENSQHPE 1020
Query: 1053 NYICKLKKALYGLKQAPKAWHSRLTGKLIELGFKASVADSSLFILKNREITIYMLIYVDD 1112
YICKL KALYGLKQAP+AW+ +L+ KL LGF AS +DSSLFIL ++IYML+YVDD
Sbjct: 1021 -YICKLDKALYGLKQAPRAWNIKLSTKLFSLGFTASKSDSSLFILHQPTVSIYMLVYVDD 1080
Query: 1113 IIIVSSSDQATERLIQKLKIDFAVKDLGGLEYFLGIEVKKTRDGIILSQRRYALDLLKRV 1172
III SS+ +++L+Q+L +FAVKDLG L YFLGIE DG++L+Q +Y DLL+R
Sbjct: 1081 IIIASSNADVSDKLLQQLSSEFAVKDLGQLHYFLGIEASYHDDGVVLTQGKYVQDLLRRT 1140
Query: 1173 NMEKCKPMSTPMGSAEKLFREQGIPLSAEEQFKYRSTVGALQYLTMTRPDLAFAVNKVCQ 1232
NM+ CKP TPM S EKL RE G L +E F YRSTVGALQYLT+TRPD++FAVNKVCQ
Sbjct: 1141 NMQLCKPSDTPMCSTEKLSRELGKALEDQEVFLYRSTVGALQYLTLTRPDISFAVNKVCQ 1200
Query: 1233 YLHTPTDAHWGAVKRILRYVKGTLALGVKIQKS-TMMLSGFSDADWAGCPDDRRSTSGFA 1292
+LH PTDAHW AVKRILRY+KGT +G+KI++S + LS FSDADWAGCPDDRRST GFA
Sbjct: 1201 FLHCPTDAHWEAVKRILRYLKGTCYVGLKIRRSLSQGLSAFSDADWAGCPDDRRSTGGFA 1260
Query: 1293 VFLGANLISWSSRKQATVSRSSTEAEYKAIANLTAEMIWIKSLLKELGVYQSKAPRLWCD 1352
+F G NL+SWSSRKQ+T+SRSSTEAEYKA+AN TAE+IW++SLL+EL V P+LWCD
Sbjct: 1261 IFCGPNLVSWSSRKQSTISRSSTEAEYKALANATAELIWMESLLQELKVPLQCKPKLWCD 1320
Query: 1353 NLGATYLTSNPVFHARTKHIEVDFHFVREQVARKAMEVRFISSSDQVADILTKPLSKTPF 1372
NLGATYLT+NPVFHARTKHIE+D HFVRE+V R +EV+FISS+DQVADI TKPL + F
Sbjct: 1321 NLGATYLTANPVFHARTKHIEIDVHFVRERVTRGQLEVQFISSADQVADIFTKPLPRPLF 1366
BLAST of CmoCh10G002590 vs. NCBI nr
Match:
QCC26836.1 (Hopscotch gagpol polyprotein [Zea mays])
HSP 1 Score: 1343.9 bits (3477), Expect = 0.0e+00
Identity = 726/1449 (50.10%), Postives = 952/1449 (65.70%), Query Frame = 0
Query: 17 ISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGNRKIIINPEF 76
+S KLT+ NYLLW Q+LP +R+ L + G P +TI S+ + + NP +
Sbjct: 20 VSEKLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTI----SDASDRTVTVANPAY 79
Query: 77 TVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQF----------------- 136
W +DQ VL + SS++ EVLS++V +T+ W TL +
Sbjct: 80 GRWIARDQAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALAT 139
Query: 137 ----ASTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDVY 196
AS++A+YF K++ D L A GK ++DEE ++++L GL D++PLVT++ R+D
Sbjct: 140 TKKGASSVAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPI 199
Query: 197 TVSDVYAHMLSYEMR-HLRKGTFEQL-SSANNVNR-ISIRGGANGGRG-SRGRSRQLNSG 256
T D+Y +LSYE R HL+ G+ + SSAN +R + G +GGRG SRGR R G
Sbjct: 200 TPGDLYTQLLSYENRMHLQTGSSSLMQSSANAASRGRGMSWGRSGGRGFSRGRGR----G 259
Query: 257 HGQSRRTVNNPGR-----QPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAENNLKQ 316
G SR + GR + +SS CQ+C + H AL CW+RFD+ Y +
Sbjct: 260 RGPSRGGFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQRSAN 319
Query: 317 AALATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAGLSISHIGNSL 376
+A +G S+ WY DTGATDHIT DL+RLT ++YTGTDQI ANG G++IS+IGN++
Sbjct: 320 SAAHQNG--SNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTGMTISNIGNAI 379
Query: 377 I--SGSSLVLKHILYVPKINKHLISVQRLASDNNAVVEFHPNYFLVKDRVTKKLLLHGRC 436
+ S SL L+ +L+VP +K+LISV RL +DN+ +EFH ++FL+KDR TK +LLHG+C
Sbjct: 380 VPTSSRSLHLRSVLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKC 439
Query: 437 KNGLYVLP--------HNFSQALLTAKLSKEQWHRRLGHPASPITIRILQDNNLAIDTNI 496
++GLY LP HNFS + ++ E WH+RLGHP+ I R++ +NNL +N
Sbjct: 440 RDGLYPLPPHPDLRLKHNFS----STRVPLEHWHKRLGHPSRDIVHRVISNNNLPCLSNN 499
Query: 497 PSSSICNACQLGKAHQLPFGSSQHVSTAPLQLIHTDVWGPSIASVNNSKYYVSFVDDFSR 556
++S+C+AC KAHQLP+ S S+APL LI +DV+GP+I S KYYVSF+DD+S+
Sbjct: 500 STTSVCDACLQAKAHQLPYTISMSQSSAPLMLIFSDVFGPAIDSFGRYKYYVSFIDDYSK 559
Query: 557 YVWIYFLRCKSDVESVFLQFQKHVETMLNTKIRSVQSDWGGEYHRLHNYFKSTGIEHHIS 616
+ WIY LR KSDV F +FQ VE M KI + QSDWGGEY +L+ +FK+ GI H +S
Sbjct: 560 FTWIYLLRHKSDVYKSFCEFQHLVERMFGRKIIAFQSDWGGEYEKLNAHFKTIGIHHQVS 619
Query: 617 CPHTHQQNGLVERKHRHIVETGLALLAQANMPLSYWDEAFNTACFLINRMPSRTIQQDTP 676
CPHTHQQNG ERKHRHIVE GLALLAQ++MPL YWD AF A +LINR PS+TI DTP
Sbjct: 620 CPHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKTIAHDTP 679
Query: 677 LHKLFGKSPDYSMLRVFGCACWPNLRPYNNKKLSFRTTRCIFLGYSSSHKGYKCLNRSTG 736
LHKL G +PDYS LR+FGCACWPNLRPYN KL FR+TRC+FLGYS+ HKG+KCL+ STG
Sbjct: 680 LHKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLDISTG 739
Query: 737 RIYISRDVVFDENIFPFEESKPPNKTTNPHHPVLLPALAKLANFYTENA-----LTDIEP 796
RIYISRDVVFDE++FPF +LLP + N T++A + P
Sbjct: 740 RIYISRDVVFDEHVFPFASLNKNAGVKYTSEVLLLPHDSCGNNMLTDHANNLPGSSSPLP 799
Query: 797 VVSNSHMNDGQTDNIASDNL-------------------------------SGVSLSS-- 856
++ H G ++ S+N +GVS ++
Sbjct: 800 FLA-QHFLQGNSEVPTSNNTAMALPASGPNEVSVPPALVPSSLVPAASPAPTGVSANAEP 859
Query: 857 ---ADNTRSSEEIAE------------YEAESSSINAQNQTHEHVSDQPTEAASQHPMRT 916
AD+ S +A +A SS+ H+ P AA+ RT
Sbjct: 860 APEADSLSSGPPVATESVTGVPDADPLLQAPGSSV-----AHQTPDSAPLSAAAP---RT 919
Query: 917 RLRNNIVQAKQFTDGTIRYSETSRKFASAVTITTPIIETATEPRNLQEAMQHPRWRGAMN 976
RL++ I + KQFTDGT+RY + + TEP ++ EA+ P+WR AM
Sbjct: 920 RLQHGISKPKQFTDGTVRYGNAAARI--------------TEPSSVSEALADPQWRAAME 979
Query: 977 DELSALKRNATWDLVPPKPGINLIDSKWVYKVKRKADGSVERLKARLVAKGFKQRFGVDY 1036
E AL++N TW LVPP NLID KWV+KVK ADGS++RLKARLVAKGFKQ++G+DY
Sbjct: 980 AEFQALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDY 1039
Query: 1037 TDTFSPVIKPSTIRVILSLAVTKGWNMRQVDIQNAFLHGILKEEVYMRQPPGFQDSAKPK 1096
DTFSPV+K STIR++LSLAV++ W++RQ+D+QNAFLHGIL+E VYM+QPPGF D+ P
Sbjct: 1040 DDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGFADTTHP- 1099
Query: 1097 NYICKLKKALYGLKQAPKAWHSRLTGKLIELGFKASVADSSLFILKNREITIYMLIYVDD 1156
NY C L+K+LYGLKQAP+AW+SRL+ KL LGF S AD SLFI IY+L+YVDD
Sbjct: 1100 NYHCHLQKSLYGLKQAPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVDD 1159
Query: 1157 IIIVSSSDQATERLIQKLKIDFAVKDLGGLEYFLGIEVKKTRDGIILSQRRYALDLLKRV 1216
III SS A + ++ KLK DFA+KDLG L YFLGIEV + DG++L Q +YA DLLKRV
Sbjct: 1160 IIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARDLLKRV 1219
Query: 1217 NMEKCKPMSTPMGSAEKLFREQGIPLSAEEQFKYRSTVGALQYLTMTRPDLAFAVNKVCQ 1276
ME CKP+ TP+ ++EKL G LS EE KYRS VGALQYLT+TRPDL++A+N+VCQ
Sbjct: 1220 GMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRVCQ 1279
Query: 1277 YLHTPTDAHWGAVKRILRYVKGTLALGVKIQKS-TMMLSGFSDADWAGCPDDRRSTSGFA 1336
+LH PTD HW AVKRILR ++ T+ LG+ I+ S ++MLS FSDADWAGCPDDR+ST G+A
Sbjct: 1280 FLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLSAFSDADWAGCPDDRKSTGGYA 1339
Query: 1337 VFLGANLISWSSRKQATVSRSSTEAEYKAIANLTAEMIWIKSLLKELGVYQSKAPRLWCD 1372
+FLG NLISW+S+KQ+TVSRSSTEAEYKA+AN TAE+IW++SLL ELG+ + PRLWCD
Sbjct: 1340 LFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCD 1399
BLAST of CmoCh10G002590 vs. NCBI nr
Match:
pir|T02087| (gag/pol polyprotein - maize retrotransposon Hopscotch [Zea mays] >AAA57005.1 copia-like retrotransposon Hopscotch polyprotein [Zea mays])
HSP 1 Score: 1340.9 bits (3469), Expect = 0.0e+00
Identity = 718/1433 (50.10%), Postives = 942/1433 (65.74%), Query Frame = 0
Query: 17 ISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGNRKIIINPEF 76
+S KLT+ NYLLW Q+LP +R+ L + G P +TI S+ + + NP +
Sbjct: 20 VSEKLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTI----SDASDRTVTVANPAY 79
Query: 77 TVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQF----------------- 136
W +DQ VL + SS++ EVLS++V +T+ W TL +
Sbjct: 80 GRWIARDQAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALAT 139
Query: 137 ----ASTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDVY 196
AS++A+YF K++ D L A GK ++DEE ++++L GL D++PLVT++ R+D
Sbjct: 140 TKKGASSVAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPI 199
Query: 197 TVSDVYAHMLSYEMR-HLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSRQLNSGHGQ 256
T D+Y +LSYE R HL+ G+ + S+ N R RG + G G RG SR G G
Sbjct: 200 TPGDLYTQLLSYENRMHLQTGSSSLMQSSANA-RSPGRGMSWGRSGGRGFSRGRGRGRGP 259
Query: 257 SRRTVNNPGR-----QPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAENNLKQAAL 316
SR + GR + +SS CQ+C + H AL CW+RFD+ Y + +A
Sbjct: 260 SRGGFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQRSANSAA 319
Query: 317 ATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAGLSISHIGNSLI-- 376
+G S+ WY DTGATDHIT DL+RLT ++YTGTDQI ANG G++IS+IGN+++
Sbjct: 320 HQNG--SNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTGMTISNIGNAIVPT 379
Query: 377 SGSSLVLKHILYVPKINKHLISVQRLASDNNAVVEFHPNYFLVKDRVTKKLLLHGRCKNG 436
S SL L+ +L+VP +K+LISV RL +DN+ +EFH ++FL+KDR TK +LLHG+C++G
Sbjct: 380 SSRSLHLRSVLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDG 439
Query: 437 LYVLP--------HNFSQALLTAKLSKEQWHRRLGHPASPITIRILQDNNLAIDTNIPSS 496
LY LP HNFS + ++ E WH+RLGHP+ I R++ +NNL +N ++
Sbjct: 440 LYPLPPHPDLRLKHNFS----STRVPLEHWHKRLGHPSRDIVHRVISNNNLPCLSNNSTT 499
Query: 497 SICNACQLGKAHQLPFGSSQHVSTAPLQLIHTDVWGPSIASVNNSKYYVSFVDDFSRYVW 556
S+C+AC KAHQLP+ S S+APL LI +DV+GP+I S KYYVSF+DD+S++ W
Sbjct: 500 SVCDACLQAKAHQLPYTISMSQSSAPLMLIFSDVFGPAIDSFGRYKYYVSFIDDYSKFTW 559
Query: 557 IYFLRCKSDVESVFLQFQKHVETMLNTKIRSVQSDWGGEYHRLHNYFKSTGIEHHISCPH 616
IY LR KSDV F +FQ VE M KI + QSDWGGEY +L+ +FK+ GI H +SCPH
Sbjct: 560 IYLLRHKSDVYKSFCEFQHLVERMFGRKIIAFQSDWGGEYEKLNAHFKTIGIHHQVSCPH 619
Query: 617 THQQNGLVERKHRHIVETGLALLAQANMPLSYWDEAFNTACFLINRMPSRTIQQDTPLHK 676
THQQNG ERKHRHIVE GLALLAQ++MPL YWD AF A +LINR PS+TI DTPLHK
Sbjct: 620 THQQNGAAERKHRHIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKTIAHDTPLHK 679
Query: 677 LFGKSPDYSMLRVFGCACWPNLRPYNNKKLSFRTTRCIFLGYSSSHKGYKCLNRSTGRIY 736
L G +PDYS LR+FGCACWPNLRPYN KL FR+TRC+FLGYS+ HKG+KCL+ STGRIY
Sbjct: 680 LTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIY 739
Query: 737 ISRDVVFDENIFPFEESKPPNKTTNPHHPVLLPALAKLANFYTENA-----LTDIEPVVS 796
ISRDVVFDE++FPF +LLP + N T++A + P ++
Sbjct: 740 ISRDVVFDEHVFPFASLNKNAGVKYTSEVLLLPHDSCGNNMLTDHANNLPGSSSPLPFLA 799
Query: 797 NSHMNDGQTDNIASDNL-------------------------------SGVSLSS----- 856
H G ++ S+N +GVS ++
Sbjct: 800 -QHFLQGNSEVPTSNNTAMALPASGPNEVSVPPALVPSSLVPAASPAPTGVSANAEPAPE 859
Query: 857 ADNTRSSEEIAE------------YEAESSSINAQNQTHEHVSDQPTEAASQHPMRTRLR 916
AD+ S +A +A SS+ H+ P AA+ RTRL+
Sbjct: 860 ADSLSSGPPVATESVTGVPDADPLLQAPGSSV-----AHQTPDSAPLSAAAP---RTRLQ 919
Query: 917 NNIVQAKQFTDGTIRYSETSRKFASAVTITTPIIETATEPRNLQEAMQHPRWRGAMNDEL 976
+ I + KQFTDGT+RY + + TEP ++ EA+ P+WR AM E
Sbjct: 920 HGISKPKQFTDGTVRYGNAAARI--------------TEPSSVSEALADPQWRAAMEAEF 979
Query: 977 SALKRNATWDLVPPKPGINLIDSKWVYKVKRKADGSVERLKARLVAKGFKQRFGVDYTDT 1036
AL++N TW LVPP NLID KWV+KVK ADGS++RLKARLVAKGFKQ++G+DY DT
Sbjct: 980 QALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDYDDT 1039
Query: 1037 FSPVIKPSTIRVILSLAVTKGWNMRQVDIQNAFLHGILKEEVYMRQPPGFQDSAKPKNYI 1096
FSPV+K STIR++LSLAV++ W++RQ+D+QNAFLHGIL+E VYM+QPPGF D+ P NY
Sbjct: 1040 FSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGFADTTHP-NYH 1099
Query: 1097 CKLKKALYGLKQAPKAWHSRLTGKLIELGFKASVADSSLFILKNREITIYMLIYVDDIII 1156
C L+K+LYGLKQ P+AW+SRL+ KL LGF S AD SLFI IY+L+YVDDIII
Sbjct: 1100 CHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVDDIII 1159
Query: 1157 VSSSDQATERLIQKLKIDFAVKDLGGLEYFLGIEVKKTRDGIILSQRRYALDLLKRVNME 1216
SS A + ++ KLK DFA+KDLG L YFLGIEV + DG++L Q +YA DLLKRV ME
Sbjct: 1160 TGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARDLLKRVGME 1219
Query: 1217 KCKPMSTPMGSAEKLFREQGIPLSAEEQFKYRSTVGALQYLTMTRPDLAFAVNKVCQYLH 1276
CKP+ TP+ ++EKL G LS EE KYRS VGALQYLT+TRPDL++A+N+VCQ+LH
Sbjct: 1220 CCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRVCQFLH 1279
Query: 1277 TPTDAHWGAVKRILRYVKGTLALGVKIQKS-TMMLSGFSDADWAGCPDDRRSTSGFAVFL 1336
PTD HW AVKRILR ++ T+ LG+ I+ S ++MLS FSDADWAGCPDDR+ST G+A+FL
Sbjct: 1280 APTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLSAFSDADWAGCPDDRKSTGGYALFL 1339
Query: 1337 GANLISWSSRKQATVSRSSTEAEYKAIANLTAEMIWIKSLLKELGVYQSKAPRLWCDNLG 1359
G NLISW+S+KQ+TVSRSSTEAEYKA+AN TAE+IW++SLL ELG+ + PRLWCDNLG
Sbjct: 1340 GPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCDNLG 1399
BLAST of CmoCh10G002590 vs. NCBI nr
Match:
AAT07563.1 (putative polyprotein [Oryza sativa Japonica Group] >AAT07631.1 putative polyprotein [Oryza sativa Japonica Group])
HSP 1 Score: 1336.6 bits (3458), Expect = 0.0e+00
Identity = 710/1443 (49.20%), Postives = 946/1443 (65.56%), Query Frame = 0
Query: 8 MSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGN 67
+S+P IS KLT++N+ LW+ QIL LR L + + AP+ I E ++
Sbjct: 10 ISNPLFGLQISDKLTKQNHPLWAAQILTTLRGAQLEEHIVSTTAAPAAEIEKEDGDKDKK 69
Query: 68 RKIII-NPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFA------ 127
KI+I NPE+ W+ QDQ VL I SS++ EVL + G TA +AW ++ F+
Sbjct: 70 TKIVIPNPEYKTWFVQDQQVLGFIFSSLSREVLQQVAGARTAAQAWNMIDDMFSCKSKAG 129
Query: 128 ------STIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSI--TTRT 187
++++Y K++ L D +AA GK +++EEL+AY++ GL ++D V + T R
Sbjct: 130 TINKGPMSMSEYIAKMRSLADKMAATGKPLDEEELVAYIINGLDSEFDAAVEGLMATARI 189
Query: 188 DVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSRQ--LNS 247
++S VY+ +LSYE R +R +SAN NR RGG G+RG R
Sbjct: 190 APVSISHVYSQLLSYENR-IRIRQAYLTTSANAANRGGGRGGRGSSTGNRGGGRGGFGRG 249
Query: 248 GHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAENNLKQAALA 307
GHG+ + + GR + + VCQ+C K H A CWHR+D +Y + L A A
Sbjct: 250 GHGRGAPSGASQGRGRG---NDTRPVCQVCHKRGHVASDCWHRYDDSYVPDEKLGGA--A 309
Query: 308 TSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAGLSISHIGNSLISGS 367
T Y DTNWYVDTGATDHIT L++LTT+ERY GTDQI A+G G SI H+G++++
Sbjct: 310 TYAYGVDTNWYVDTGATDHITGQLDKLTTKERYKGTDQIHTASGEGTSIKHVGHAIVPTP 369
Query: 368 S--LVLKHILYVPKINKHLISVQRLASDNNAVVEFHPNYFLVKDRVTKKLLLHGRCKNGL 427
S L LK++L+VP+ K+L+SV +L +DN A +E H YFL+KD+ T++ +L G C+ GL
Sbjct: 370 SHPLHLKNVLHVPEAAKNLVSVHKLVADNYAFLEIHGKYFLIKDKATRRTILEGPCRRGL 429
Query: 428 YVLPHNFS-QALLTAKLSKEQWHRRLGHPASPITIRILQDNNLAIDTNIPSSSICNACQL 487
Y LP S + A S +WH RLGHP+ PI +RIL N L +N + S+C+ACQ
Sbjct: 430 YPLPARSSLRQAFVATPSFVRWHGRLGHPSKPIVLRILSQNKLPCLSNSVNESVCDACQQ 489
Query: 488 GKAHQLPFGSSQHVSTAPLQLIHTDVWGPSIASVNNSKYYVSFVDDFSRYVWIYFLRCKS 547
K HQLPF S VS PL+LIH+DVWGP+ SV KYYVSF+DD+S++VWIYFL+ KS
Sbjct: 490 AKCHQLPFPRSTSVSNNPLELIHSDVWGPASESVGAKKYYVSFIDDYSKFVWIYFLKHKS 549
Query: 548 DVESVFLQFQKHVETMLNTKIRSVQSDWGGEYHRLHNYFKSTGIEHHISCPHTHQQNGLV 607
+V F +FQK VE + KI S+Q+DWGGEY +LH +F GI HH+SCPHTHQQNG V
Sbjct: 550 EVFQKFHEFQKLVERQFDRKILSMQTDWGGEYLKLHTFFNEIGISHHVSCPHTHQQNGAV 609
Query: 608 ERKHRHIVETGLALLAQANMPLSYWDEAFNTACFLINRMPSRTIQQDTPLHKLFGKSPDY 667
ERKHRHIVE GL+LLA A+MPL +WDEAF A +LINR+PS+ I+ DTPL +LF ++PDY
Sbjct: 610 ERKHRHIVEVGLSLLAHASMPLKFWDEAFLAATYLINRLPSKVIKFDTPLERLFKQTPDY 669
Query: 668 SMLRVFGCACWPNLRPYNNKKLSFRTTRCIFLGYSSSHKGYKCLNRSTGRIYISRDVVFD 727
LR FGCACWPNLRPYN KL FR+ +C+FLG+S+ HKG+KCL+ STGR+Y+SRDV FD
Sbjct: 670 KSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNIHKGFKCLDVSTGRVYVSRDVTFD 729
Query: 728 ENIFPFEESKPPNKTTNPHHPVLLPALA---------------KLANFYTENALTDIEPV 787
E +FPF P LLP L N NA TDI
Sbjct: 730 EQVFPFANLHPNAGARLRAEISLLPPTLINEKTSDQGGEEHHDHLFNISMPNA-TDISCA 789
Query: 788 VSNSHMND----------GQTDNIASDNL---------------------------SGVS 847
S ++N G ++A ++ SG+
Sbjct: 790 ESPRNVNSDIPGAFGRVHGANGDLAGESASDSASVQAQLQRQASGSATQGESEQQRSGIQ 849
Query: 848 LSSADNTRSSEEIA---EYEAESSSINAQNQTHEHVSDQPTEAASQHPM---RTRLRNNI 907
+ A + +S A A +SS Q+H+ S P+E+A + +TRL++ I
Sbjct: 850 PARATSPAASPTAAPPSPARAVASSSGGAQQSHQPGSSAPSESAQLSEVIRPKTRLQSGI 909
Query: 908 VQAKQFTDGTIRYSETSRKFASAVTITTPIIETATEPRNLQEAMQHPRWRGAMNDELSAL 967
+ K +TDGT+RYS ++ EP+ L EA+ W+ AM+ E AL
Sbjct: 910 RKEKIYTDGTVRYS---------------CFTSSGEPQTLHEALGDKNWKEAMDSEYQAL 969
Query: 968 KRNATWDLVPPKPGINLIDSKWVYKVKRKADGSVERLKARLVAKGFKQRFGVDYTDTFSP 1027
+N TW LVP K G N+ID KWVYKVKRKADGS++R KAR+VAKGFKQR+G+DY DTF+P
Sbjct: 970 MKNKTWHLVPSKKGQNIIDCKWVYKVKRKADGSLDRYKARVVAKGFKQRYGIDYEDTFNP 1029
Query: 1028 VIKPSTIRVILSLAVTKGWNMRQVDIQNAFLHGILKEEVYMRQPPGFQDSAKPKNYICKL 1087
V+K +TIR ILS+A+++GW +RQ+D+QNAFLHG+L+E+V+MRQPPG++ + Y+CKL
Sbjct: 1030 VVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGYE---QKDGYVCKL 1089
Query: 1088 KKALYGLKQAPKAWHSRLTGKLIELGFKASVADSSLFILKNREITIYMLIYVDDIIIVSS 1147
KALYGLKQAP+AW+SRL+ KL ELGFK+S +D+SLF ++ ++ML+YVDDII+ SS
Sbjct: 1090 DKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVAMFMLVYVDDIIVASS 1149
Query: 1148 SDQATERLIQKLKIDFAVKDLGGLEYFLGIEVKKTRDGIILSQRRYALDLLKRVNMEKCK 1207
S AT L++ L +FA+KDLG L YFLGIEVK+ +GI+L+Q +YA+D+LKRVNM CK
Sbjct: 1150 SIDATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRVNMSDCK 1209
Query: 1208 PMSTPMGSAEKLFREQGIPLSAEEQFKYRSTVGALQYLTMTRPDLAFAVNKVCQYLHTPT 1267
++TP+ +EKL +G P E+ +YRS VGALQYLT+TRPDL+F+VNKVCQYLH PT
Sbjct: 1210 AVNTPLSISEKLSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAPT 1269
Query: 1268 DAHWGAVKRILRYVKGTLALGVKIQKS-TMMLSGFSDADWAGCPDDRRSTSGFAVFLGAN 1327
HW A KRILRY+K T+ LG+KI KS ++++S FSDADWAGC DDR ST GFAVF+G N
Sbjct: 1270 TKHWAAAKRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRHSTGGFAVFIGPN 1329
Query: 1328 LISWSSRKQATVSRSSTEAEYKAIANLTAEMIWIKSLLKELGVYQSKAPRLWCDNLGATY 1372
L+SWS+RKQATVSRSSTEAEYKA+AN+TAE++WI++LL ELG+ K ++WCDN+GA Y
Sbjct: 1330 LVSWSARKQATVSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAPKIAKVWCDNIGAKY 1389
BLAST of CmoCh10G002590 vs. NCBI nr
Match:
XP_035817309.1 (uncharacterized protein LOC100279596 isoform X1 [Zea mays] >XP_035817310.1 uncharacterized protein LOC100279596 isoform X1 [Zea mays])
HSP 1 Score: 1333.9 bits (3451), Expect = 0.0e+00
Identity = 727/1516 (47.96%), Postives = 959/1516 (63.26%), Query Frame = 0
Query: 1 MSIPNNTM------SSPSIS-----QVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGS 60
M++ N+T SSPS+S I+V+LT+EN+ LW Q P LR+ L G+VDGS
Sbjct: 1 MALTNSTFPGTIASSSPSLSLSSLGHAITVRLTRENFFLWKAQASPVLRAHQLFGYVDGS 60
Query: 61 MPAPSQTIAVEPSEETGNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAR 120
+ APS+ I E + + NP + +WY QDQLVLS + SS++E++L M TA
Sbjct: 61 IKAPSEFITTGSGAEA---RQVPNPAYLLWYTQDQLVLSTLVSSMSEDMLGQMTQYKTAV 120
Query: 121 EAWITLERQFAS----------------------TIADYFRKVKHLGDTLAAIGKRIEDE 180
+ W L +S T + YF+++K DT+A++G + DE
Sbjct: 121 DLWTALHEMLSSHNRAQIMQVRYQLSNTKKTSDMTASAYFQRMKSYADTMASLGYPLNDE 180
Query: 181 ELIAYMLQGLGPDYDPLVTSITTRTDVYTVSDVYAHMLSYEMRHLRKG-TFEQLSSANNV 240
E++ YML GLG +++PLV +IT R D +++ ++ +LS E+R R T E LSSAN
Sbjct: 181 EILGYMLAGLGAEFEPLVAAITARDDPISLTSFFSQLLSAEVRLCRHAPTTEILSSANTA 240
Query: 241 NRISIRGGANGGRGSRGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHD 300
R G G RG R R G G R ++ G +P+ CQ+CGK HD
Sbjct: 241 TRQPFTRG--GSRGGPFRGRNQGRGRGGPGRGHSHGGVKPT---------CQVCGKYGHD 300
Query: 301 ALQCWHRFDQAYQAENNLKQAALA--TSGYTSDTNWYVDTGATDHITNDLERLTTRERYT 360
AL+C+ RF+ A+Q E++ ++A + T Y DT+W +D+GA DH+T+DL+RLTT ER++
Sbjct: 301 ALRCYQRFNHAFQPEDSRSRSANSANTGAYNIDTDWLLDSGANDHLTSDLDRLTTHERFS 360
Query: 361 GTDQIQVANGAGLSISHIGNSLISGSS--LVLKHILYVPKINKHLISVQRLASDNNAVVE 420
G D +QVANG+GLSISH G SL+ GSS L L+++L+VP ++ HL+S RLASDNN +E
Sbjct: 361 GKDTVQVANGSGLSISHFGQSLLPGSSRPLYLRNVLHVPGLSNHLLSAHRLASDNNVFIE 420
Query: 421 FHPNYFLVKDRVTKKLLLHGRCKNGLYVL---PHNFSQ----ALLTAKLSKEQWHRRLGH 480
HPN+F VKDRVT+K LL G+ NGLY + PH+ S L S + WH+RLGH
Sbjct: 421 LHPNFFCVKDRVTQKTLLRGKSHNGLYPVPCSPHSASPPSRLGLTAVMASTDLWHQRLGH 480
Query: 481 PASPITIRILQDNNLAIDTNIPSSSICNACQLGKAHQLPFGSSQHVSTAPLQLIHTDVWG 540
P+ I +L+ N LA + SSS+C++CQ K HQLPF S HVS++PL+L+H+DVWG
Sbjct: 481 PSFSIVSSVLRSNKLACAPS-QSSSVCDSCQRAKIHQLPFYKSNHVSSSPLELVHSDVWG 540
Query: 541 PSIASVNNSKYYVSFVDDFSRYVWIYFLRCKSDVESVFLQFQKHVETMLNTKIRSVQSDW 600
P+I SV KYYVSF+DD+SRY WIY L+ KSDVE F FQKHVE +LN KIR QSDW
Sbjct: 541 PAITSVGGFKYYVSFLDDYSRYTWIYLLKRKSDVEHAFHLFQKHVERLLNAKIRIFQSDW 600
Query: 601 GGEYHRLHNYFKSTGIEHHISCPHTHQQNGLVERKHRHIVETGLALLAQANMPLSYWDEA 660
GGEY RL + STGI+H ++CPHT QQNG+ ERK+RHIVETGLALLA +++P+ +WDEA
Sbjct: 601 GGEYQRLSRHLASTGIQHRVTCPHTSQQNGIAERKYRHIVETGLALLAHSSLPVKFWDEA 660
Query: 661 FNTACFLINRMPSRTIQQDTPLHKLFGKSPDYSMLRVFGCACWPNLRPYNNKKLSFRTTR 720
F TAC+LINRMP+RT+ TPL +F + P+YS+LRVFGCACWPNLRPYNN KLSFR+ +
Sbjct: 661 FITACYLINRMPTRTLHNSTPLELIFHEKPEYSLLRVFGCACWPNLRPYNNHKLSFRSKQ 720
Query: 721 CIFLGYSSSHKGYKCLNRSTGRIYISRDVVFDENIFPFEESKP---PNKTTNPHHPVLLP 780
C+FLGYSS HKGYKCL+RS GRIYISRDVVFDE++FPF S P P+ + H P
Sbjct: 721 CVFLGYSSMHKGYKCLDRSNGRIYISRDVVFDEHLFPFASSNPSCEPDAYVD-HMRNYRP 780
Query: 781 ALAKLANFYTENALTDIEPVVSNSHMNDGQTDNIASDNLSGVSLS--SADNTRSSEEIAE 840
L +N E + + S+ N + D + + +D +S A
Sbjct: 781 ELL-ASNLSVECSPVSVSDASSSDSSNHASAPSSRLDIIPAAVCTPIRSDTDHNSLPSAA 840
Query: 841 YEAESSSI-NAQNQTHEH---------VSDQPTEAASQHP-------------------- 900
SS + A +H H S P +A S P
Sbjct: 841 LPITSSDMCTAACPSHNHPTLTSPPAATSSSPPDATSPLPAATSPSPPAATSPLPAATSP 900
Query: 901 ------------------------------------------------------------ 960
Sbjct: 901 PSMLRMHEDTNTNPAETYPAAVHAPHVHSPDALSADALPPATESAAGPTDLVISTTAPTS 960
Query: 961 -MRTRLRNNIVQAKQFTDGTIRYSETSRKFASAVTITTPIIETATEPRNLQEAMQHPRWR 1020
+ TRLRNNI + TDGTIRY+ +SR F + P N A+ + +WR
Sbjct: 961 TIVTRLRNNISKPLLHTDGTIRYNPSSRSFGLSAV-----------PMNYHHALANEKWR 1020
Query: 1021 GAMNDELSALKRNATWDLVPPKPGINLIDSKWVYKVKRKADGSVERLKARLVAKGFKQRF 1080
AM+ E +AL +N TW LVP G N+I KWV+++K ADGSV++ KARLVA+GF Q+
Sbjct: 1021 LAMDAEYTALMQNGTWSLVPKPSGHNIISCKWVFRIKEHADGSVDKYKARLVARGFTQQH 1080
Query: 1081 GVDYTDTFSPVIKPSTIRVILSLAVTKGWNMRQVDIQNAFLHGILKEEVYMRQPPGFQDS 1140
G+DY +TFSPV+K ST+R++LS+A+++ W++RQ+DI NAFLHG+L E+VYM QPPGFQD
Sbjct: 1081 GIDYFETFSPVVKMSTVRLVLSIAISRQWDIRQLDISNAFLHGVLNEDVYMHQPPGFQDP 1140
Query: 1141 AKPKNYICKLKKALYGLKQAPKAWHSRLTGKLIELGFKASVADSSLFILKNREITIYMLI 1200
+KP ++CKL KA+YGLKQ+P+AW+SRL+ +L +LGF SVAD+SLF + +Y+L+
Sbjct: 1141 SKP-GFVCKLHKAIYGLKQSPRAWYSRLSDRLCQLGFVPSVADTSLFTFHQGAVIMYLLV 1200
Query: 1201 YVDDIIIVSSSDQATERLIQKLKIDFAVKDLGGLEYFLGIEVKKTRDGIILSQRRYALDL 1260
YVDDIIIVSSS T+ L+Q+L + F VKDLG L +FLGIEV G+ L+Q++YA D+
Sbjct: 1201 YVDDIIIVSSSPSITQLLLQQLSVTFPVKDLGPLHFFLGIEVASNSGGMTLTQQKYARDI 1260
Query: 1261 LKRVNMEKCKPMSTPMGSAEKLFREQGIPLSAEEQFKYRSTVGALQYLTMTRPDLAFAVN 1320
L+R +ME CK + TP+ +KL R G L ++ F YRS VGALQYLT+TRPDL+FAVN
Sbjct: 1261 LRRADMENCKSVPTPLCVTDKLSRHHGNKLGDKDAFVYRSIVGALQYLTLTRPDLSFAVN 1320
Query: 1321 KVCQYLHTPTDAHWGAVKRILRYVKGTLALGVKIQKS-TMMLSGFSDADWAGCPDDRRST 1375
KVCQ+L P D HW AVKRILR+VKGTL G+ ++K+ + +LS F+DADWAGC DDRRST
Sbjct: 1321 KVCQFLAQPADIHWEAVKRILRFVKGTLHTGLYLRKTGSTLLSIFTDADWAGCIDDRRST 1380
BLAST of CmoCh10G002590 vs. TAIR 10
Match:
AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )
HSP 1 Score: 408.3 bits (1048), Expect = 2.5e-113
Identity = 212/482 (43.98%), Postives = 305/482 (63.28%), Query Frame = 0
Query: 860 IETATEPRNLQEAMQHPRWRGAMNDELSALKRNATWDLVPPKPGINLIDSKWVYKVKRKA 919
I A EP EA + W GAM+DE+ A++ TW++ P I KWVYK+K +
Sbjct: 80 IAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNS 139
Query: 920 DGSVERLKARLVAKGFKQRFGVDYTDTFSPVIKPSTIRVILSLAVTKGWNMRQVDIQNAF 979
DG++ER KARLVAKG+ Q+ G+D+ +TFSPV K +++++IL+++ + + Q+DI NAF
Sbjct: 140 DGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAF 199
Query: 980 LHGILKEEVYMRQPPGF---QDSAKPKNYICKLKKALYGLKQAPKAWHSRLTGKLIELGF 1039
L+G L EE+YM+ PPG+ Q + P N +C LKK++YGLKQA + W + + LI GF
Sbjct: 200 LNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGF 259
Query: 1040 KASVADSSLFILKNREITIYMLIYVDDIIIVSSSDQATERLIQKLKIDFAVKDLGGLEYF 1099
S +D + F+ + + +L+YVDDIII S++D A + L +LK F ++DLG L+YF
Sbjct: 260 VQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYF 319
Query: 1100 LGIEVKKTRDGIILSQRRYALDLLKRVNMEKCKPMSTPMGSAEKLFREQGIPLSAEEQFK 1159
LG+E+ ++ GI + QR+YALDLL + CKP S PM + G +
Sbjct: 320 LGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF--VDAKA 379
Query: 1160 YRSTVGALQYLTMTRPDLAFAVNKVCQYLHTPTDAHWGAVKRILRYVKGTLALGV-KIQK 1219
YR +G L YL +TR D++FAVNK+ Q+ P AH AV +IL Y+KGT+ G+ +
Sbjct: 380 YRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQ 439
Query: 1220 STMMLSGFSDADWAGCPDDRRSTSGFAVFLGANLISWSSRKQATVSRSSTEAEYKAIANL 1279
+ M L FSDA + C D RRST+G+ +FLG +LISW S+KQ VS+SS EAEY+A++
Sbjct: 440 AEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFA 499
Query: 1280 TAEMIWIKSLLKELGVYQSKAPRLWCDNLGATYLTSNPVFHARTKHIEVDFHFVREQVAR 1338
T EM+W+ +EL + SK L+CDN A ++ +N VFH RTKHIE D H VRE+
Sbjct: 500 TDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVY 559
BLAST of CmoCh10G002590 vs. TAIR 10
Match:
ATMG00810.1 (DNA/RNA polymerases superfamily protein )
HSP 1 Score: 218.4 bits (555), Expect = 3.6e-56
Identity = 112/228 (49.12%), Postives = 151/228 (66.23%), Query Frame = 0
Query: 1055 IYMLIYVDDIIIVSSSDQATERLIQKLKIDFAVKDLGGLEYFLGIEVKKTRDGIILSQRR 1114
+Y+L+YVDDI++ SS+ LI +L F++KDLG + YFLGI++K G+ LSQ +
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 1115 YALDLLKRVNMEKCKPMSTPMGSAEKLFREQGIPLSAEEQFKYRSTVGALQYLTMTRPDL 1174
YA +L M CKPMSTP+ + +RS VGALQYLT+TRPD+
Sbjct: 61 YAEQILNNAGMLDCKPMSTPL---PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDI 120
Query: 1175 AFAVNKVCQYLHTPTDAHWGAVKRILRYVKGTLALGVKIQK-STMMLSGFSDADWAGCPD 1234
++AVN VCQ +H PT A + +KR+LRYVKGT+ G+ I K S + + F D+DWAGC
Sbjct: 121 SYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTS 180
Query: 1235 DRRSTSGFAVFLGANLISWSSRKQATVSRSSTEAEYKAIANLTAEMIW 1282
RRST+GF FLG N+ISWS+++Q TVSRSSTE EY+A+A AE+ W
Sbjct: 181 TRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
BLAST of CmoCh10G002590 vs. TAIR 10
Match:
ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )
HSP 1 Score: 111.3 bits (277), Expect = 6.2e-24
Identity = 55/112 (49.11%), Postives = 79/112 (70.54%), Query Frame = 0
Query: 852 AVTITTPIIETATEPRNLQEAMQHPRWRGAMNDELSALKRNATWDLVPPKPGINLIDSKW 911
++TITT I EP+++ A++ P W AM +EL AL RN TW LVPP N++ KW
Sbjct: 17 SLTITTTI---KKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKW 76
Query: 912 VYKVKRKADGSVERLKARLVAKGFKQRFGVDYTDTFSPVIKPSTIRVILSLA 964
V+K K +DG+++RLKARLVAKGF Q G+ + +T+SPV++ +TIR IL++A
Sbjct: 77 VFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
BLAST of CmoCh10G002590 vs. TAIR 10
Match:
ATMG00240.1 (Gag-Pol-related retrotransposon family protein )
HSP 1 Score: 80.5 bits (197), Expect = 1.2e-14
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 0
Query: 1166 YLTMTRPDLAFAVNKVCQYLHTPTDAHWGAVKRILRYVKGTLALGVKIQ-KSTMMLSGFS 1225
YLT+TRPDL FAVN++ Q+ A AV ++L YVKGT+ G+ S + L F+
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61
Query: 1226 DADWAGCPDDRRSTSGFAV-----FLGA 1248
D+DWA CPD RRS +GF FLGA
Sbjct: 62 DSDWASCPDTRRSVTGFCSLVPLWFLGA 89
BLAST of CmoCh10G002590 vs. TAIR 10
Match:
AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 58.9 bits (141), Expect = 3.7e-08
Identity = 58/261 (22.22%), Postives = 97/261 (37.16%), Query Frame = 0
Query: 17 ISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGNRKIIINPEF 76
+ + + + NY W L + S +++G +DG++ + N
Sbjct: 22 VMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTL-------------------LPTNAND 81
Query: 77 TVWYPQDQLV-LSLINSSVTEEVLSTMVGITTAREAWITLERQFAST------------- 136
W +D +V LSL + ++ + V +T+R+ W+ ++ QF +
Sbjct: 82 VNWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELR 141
Query: 137 --------IADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDV 196
+ADY+RK+K L D+L + + D L+ Y+L GL P +D ++ I R
Sbjct: 142 TKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPF 201
Query: 197 YTVSDVYAHMLSYEMR-------------HLRKGTFEQLSSANNVNRISIRGGANGGRGS 243
+ D + E R H T S A V GG G
Sbjct: 202 PSFDDAATMLQEEEDRLKRAIKPNPTHVDHSSSSTVLACSEAPPVTNFQRSGGNQMGYRG 261
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q94HW2 | 5.6e-280 | 38.94 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
| Q9ZT94 | 8.1e-279 | 38.68 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... | [more] |
| P10978 | 2.3e-164 | 31.73 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
| P04146 | 1.4e-137 | 28.42 | Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3 | [more] |
| P92519 | 5.1e-55 | 49.12 | Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A4D6GKR5 | 0.0e+00 | 50.10 | Hopscotch gagpol polyprotein OS=Zea mays OX=4577 PE=4 SV=1 | [more] |
| V9GZT4 | 0.0e+00 | 50.10 | Copia-like retrotransposon Hopscotch polyprotein OS=Zea mays OX=4577 GN=gag PE=4... | [more] |
| Q75HT9 | 0.0e+00 | 49.20 | Putative polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=B1003C08.12 PE=... | [more] |
| Q75G45 | 0.0e+00 | 49.20 | Putative polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0043H23.1... | [more] |
| A0A3L6Q0W7 | 0.0e+00 | 48.02 | Putative polyprotein OS=Panicum miliaceum OX=4540 GN=C2845_PM17G04270 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG8087752.1 | 0.0e+00 | 51.33 | hypothetical protein GUJ93_ZPchr0010g8288 [Zizania palustris] | [more] |
| QCC26836.1 | 0.0e+00 | 50.10 | Hopscotch gagpol polyprotein [Zea mays] | [more] |
| pir|T02087| | 0.0e+00 | 50.10 | gag/pol polyprotein - maize retrotransposon Hopscotch [Zea mays] >AAA57005.1 cop... | [more] |
| AAT07563.1 | 0.0e+00 | 49.20 | putative polyprotein [Oryza sativa Japonica Group] >AAT07631.1 putative polyprot... | [more] |
| XP_035817309.1 | 0.0e+00 | 47.96 | uncharacterized protein LOC100279596 isoform X1 [Zea mays] >XP_035817310.1 uncha... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT4G23160.1 | 2.5e-113 | 43.98 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 | [more] |
| ATMG00810.1 | 3.6e-56 | 49.12 | DNA/RNA polymerases superfamily protein | [more] |
| ATMG00820.1 | 6.2e-24 | 49.11 | Reverse transcriptase (RNA-dependent DNA polymerase) | [more] |
| ATMG00240.1 | 1.2e-14 | 47.73 | Gag-Pol-related retrotransposon family protein | [more] |
| AT1G34070.1 | 3.7e-08 | 22.22 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... | [more] |
