CmoCh10G002160 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G002160
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionphotosynthetic NDH subunit of subcomplex B 4, chloroplastic-like
LocationCmo_Chr10: 954711 .. 956119 (-)
RNA-Seq ExpressionCmoCh10G002160
SyntenyCmoCh10G002160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAGGCTATTGCAGGCTTCAGCATGGTCAACCCAACCCTACATAGCTCTAATCTCCACCCACACAAATCAACCCTCATCCCACAACCCAAACTGGTATAGTGTCGTCTTTTTTCTTTCTGCCTCTAAACTCCATCCATTTTAACGTGCTCTGTTTGACCATTATATTATGATTGTTGCAGCCTTCGAACTCTGGAATTTTCGGTCATCAACAACTGGTAAGTTCCTCTGATTTCCACATACAATGGAAGTAAAATTGATTGACAAATTCATTATACGGAAGTAATCAGAAGTTCATGGGATTTTGTGGAATAAATAGATTGAAGATACAAAGCGCCAAAGAGGCTCTATGGGCAAGGTGAGTGCTTTCCCAGATTGGCAATTGATGGCAGTTCTAGTTGATCACTTGGACGGCCAAAGAGACCTTGTTACCCACAAATCTATTGTGCATCTTAGTGATGAAGCTATAAAGAATGTCTGTAAGTGCTTAATTAGGCTGACTTTTATGGACATTTATTATTGTAGACTGCAGACAGAATTAGGCCATTCAAATGAAAACTAACCTTCACTTTAACCATTGTTTAATATCAGACAGTCTTTACATCATGTTCACATGTTGGGGATGTCTGTTCTTTGGCTCCATGAAGGTACCATACATTCACTTTCAATGGGTTTGAGTTAAGCCAAATTGTTGGATATTGAACAAGATTATGGCTACAGGATCCATATTATGACTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAGAAGGTGAAGTTCTTTTGTTGGGACTTGAGATCTTTAACAATGACACCACGCTGAAGGTTTTGTCTCTGTAAATGTCTGATCTTGCAGCAAGAGGACATTGAAGAAGAAGCAAGAGCAGACCTTTGGCGAGAGGAGCTGATAGAGGAGATTGAGCAGAAGGTTGGAGGGCTTAGAGAGTTGGAAGAAGCTGGAAGGAAATAAGAGATTAACAAGGGATATTGGCATCCATTTGTGTCATTAGTATAATATAGCATAAACCAGTCTGTGTATACATTAAAACACTTCAGATGCAGTAGCTGTTGGCAATATAGGGATTGTTTCAGTAAATTCTCACAGTTCTTTCCTTGTAGAAAAGGGAAACAAACGTAAACCAGCAGAAACCATCCAATAGGTAAAAAGTATCAGTTCGTCTACCATCAGAGGTAGTGACAATCTTGTATAAAAATCATCAGTTATGGGTCTGATAATTGTTTTAGGTTCATAAAGAATGAAAACTAAGGATAAGTGAGCATCAGAGAGATTCCCAACAGACGATCATCATTCTCAAGCTGAGATCTGATGTCCCTGTCTGTTTCATCGTCACTTGCTCAATTGATCAACACAAAACTGGAATCCAT

mRNA sequence

ATGGCTAAGGCTATTGCAGGCTTCAGCATGGTCAACCCAACCCTACATAGCTCTAATCTCCACCCACACAAATCAACCCTCATCCCACAACCCAAACTGCCTTCGAACTCTGGAATTTTCGGTCATCAACAACTGATTGAAGATACAAAGCGCCAAAGAGGCTCTATGGGCAAGGTGAGTGCTTTCCCAGATTGGCAATTGATGGCAGTTCTAGTTGATCACTTGGACGGCCAAAGAGACCTTGTTACCCACAAATCTATTGTGCATCTTAGTGATGAAGCTATAAAGAATGTCTACAGTCTTTACATCATGTTCACATGTTGGGGATGTCTGTTCTTTGGCTCCATGAAGGATCCATATTATGACTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAGAAGCAAGAGGACATTGAAGAAGAAGCAAGAGCAGACCTTTGGCGAGAGGAGCTGATAGAGGAGATTGAGCAGAAGGTTGGAGGGCTTAGAGAGTTGGAAGAAGCTGGAAGGAAATAAGAGATTAACAAGGGATATTGGCATCCATTTGTGTCATTAGTATAATATAGCATAAACCAGTCTGTGTATACATTAAAACACTTCAGATGCAGTAGCTGTTGGCAATATAGGGATTGTTTCAGTAAATTCTCACAGTTCTTTCCTTGTAGAAAAGGGAAACAAACGTAAACCAGCAGAAACCATCCAATAGGTAAAAAGTATCAGTTCGTCTACCATCAGAGGTAGTGACAATCTTGTATAAAAATCATCAGTTATGGGTCTGATAATTGTTTTAGGTTCATAAAGAATGAAAACTAAGGATAAGTGAGCATCAGAGAGATTCCCAACAGACGATCATCATTCTCAAGCTGAGATCTGATGTCCCTGTCTGTTTCATCGTCACTTGCTCAATTGATCAACACAAAACTGGAATCCAT

Coding sequence (CDS)

ATGGCTAAGGCTATTGCAGGCTTCAGCATGGTCAACCCAACCCTACATAGCTCTAATCTCCACCCACACAAATCAACCCTCATCCCACAACCCAAACTGCCTTCGAACTCTGGAATTTTCGGTCATCAACAACTGATTGAAGATACAAAGCGCCAAAGAGGCTCTATGGGCAAGGTGAGTGCTTTCCCAGATTGGCAATTGATGGCAGTTCTAGTTGATCACTTGGACGGCCAAAGAGACCTTGTTACCCACAAATCTATTGTGCATCTTAGTGATGAAGCTATAAAGAATGTCTACAGTCTTTACATCATGTTCACATGTTGGGGATGTCTGTTCTTTGGCTCCATGAAGGATCCATATTATGACTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAGAAGCAAGAGGACATTGAAGAAGAAGCAAGAGCAGACCTTTGGCGAGAGGAGCTGATAGAGGAGATTGAGCAGAAGGTTGGAGGGCTTAGAGAGTTGGAAGAAGCTGGAAGGAAATAA

Protein sequence

MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVSAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK
Homology
[Close]
BLAST of CmoCh10G002160 vs. ExPASy Swiss-Prot
Match: Q8RXS1 (Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB4 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.5e-49
Identity = 106/181 (58.56%), Postives = 126/181 (69.61%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKR--QRGSMGK 60
           MA+A   F+  N  + SS  H  K    P      N G +  + + E  +R   RGS+  
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGP------NHGYWLSKNVNEKRERNLMRGSLCV 60

Query: 61  VSAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
             A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS K
Sbjct: 61  RKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAK 120

Query: 121 DPYYDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGR 179
           DP+YDSE YR DGGDGTG+WVYE QEDIEE+ARA+LWREELIEEIEQKVGGLRELEEA  
Sbjct: 121 DPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVT 175

[Close]
BLAST of CmoCh10G002160 vs. ExPASy TrEMBL
Match: A0A6J1E2I6 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111429992 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 5.5e-98
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS
Sbjct: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]
BLAST of CmoCh10G002160 vs. ExPASy TrEMBL
Match: A0A6J1JG67 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111484826 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 7.9e-97
Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFSM+NPTLHSSNLHPHK+TLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEE ARADLWREELIEEIEQKVGGLRELEEAGRK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]
BLAST of CmoCh10G002160 vs. ExPASy TrEMBL
Match: A0A5A7UWT7 (Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002540 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.5e-82
Identity = 156/178 (87.64%), Postives = 164/178 (92.13%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFS++ PTLHSSNLHP KS LIP  KL SNSG F HQ+L +  K +RGS+ KV+
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVN 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEE ARADLWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]
BLAST of CmoCh10G002160 vs. ExPASy TrEMBL
Match: A0A1S3BVN6 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494001 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.5e-82
Identity = 156/178 (87.64%), Postives = 164/178 (92.13%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFS++ PTLHSSNLHP KS LIP  KL SNSG F HQ+L +  K +RGS+ KV+
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVN 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEE ARADLWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]
BLAST of CmoCh10G002160 vs. ExPASy TrEMBL
Match: A0A6J1EZP2 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111440832 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.2e-82
Identity = 154/179 (86.03%), Postives = 165/179 (92.18%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLH-SSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKV 60
           MAKAIAGFS++  TL+ SSNLHPHKST IP   L  NSG+F H+QL E +KRQRGS+G+V
Sbjct: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRV 60

Query: 61  SAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           +AFPDW LMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  NAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YYDSEVYRKDGGDGTGHWVYEKQEDIEE ARA+LWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179

[Close]
BLAST of CmoCh10G002160 vs. NCBI nr
Match: XP_022921851.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita moschata] >KAG7023202.1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 366.7 bits (940), Expect = 1.1e-97
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS
Sbjct: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]
BLAST of CmoCh10G002160 vs. NCBI nr
Match: XP_022987205.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 362.8 bits (930), Expect = 1.6e-96
Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFSM+NPTLHSSNLHPHK+TLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEE ARADLWREELIEEIEQKVGGLRELEEAGRK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]
BLAST of CmoCh10G002160 vs. NCBI nr
Match: XP_023516363.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362.1 bits (928), Expect = 2.8e-96
Identity = 175/178 (98.31%), Postives = 176/178 (98.88%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFSM+NPTLHSSNLHPHKSTLIP PKLPSNSGIFGHQQLIEDTKRQRGSMGKVS
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKSTLIPHPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEE ARADLWREELIEEIEQKVGGLRELEEAGRK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]
BLAST of CmoCh10G002160 vs. NCBI nr
Match: KAG6589514.1 (Expansin-A1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS
Sbjct: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQK 166
           YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQK 165

[Close]
BLAST of CmoCh10G002160 vs. NCBI nr
Match: XP_038880039.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 319.3 bits (817), Expect = 2.1e-83
Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFS++ PTLHSSNLH HKSTLIP  KL SNS  F HQ+  E TK +RGS+GK++
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHQHKSTLIPPSKLLSNSRAFNHQEPPEVTKPRRGSLGKLN 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEE ARADLWREELIEEIEQ+VGGL+ELEEAG+K
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 178

[Close]
BLAST of CmoCh10G002160 vs. TAIR 10
Match: AT1G18730.1 (NDH dependent flow 6 )

HSP 1 Score: 196.1 bits (497), Expect = 2.5e-50
Identity = 106/181 (58.56%), Postives = 126/181 (69.61%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKR--QRGSMGK 60
           MA+A   F+  N  + SS  H  K    P      N G +  + + E  +R   RGS+  
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGP------NHGYWLSKNVNEKRERNLMRGSLCV 60

Query: 61  VSAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
             A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS K
Sbjct: 61  RKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAK 120

Query: 121 DPYYDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGR 179
           DP+YDSE YR DGGDGTG+WVYE QEDIEE+ARA+LWREELIEEIEQKVGGLRELEEA  
Sbjct: 121 DPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVT 175

[Close]
BLAST of CmoCh10G002160 vs. TAIR 10
Match: AT1G18730.3 (NDH dependent flow 6 )

HSP 1 Score: 193.0 bits (489), Expect = 2.1e-49
Identity = 103/179 (57.54%), Postives = 123/179 (68.72%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MA+A   F+  N  + SS  H  K     Q   P++     +     +    RGS+    
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPK-----QNSGPNHGYWLSNVNEKRERNLMRGSLCVRK 60

Query: 61  AFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP
Sbjct: 61  ALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 179
           +YDSE YR DGGDGTG+WVYE QEDIEE+ARA+LWREELIEEIEQKVGGLRELEEA  K
Sbjct: 121 FYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 174

[Close]
BLAST of CmoCh10G002160 vs. TAIR 10
Match: AT1G18730.2 (NDH dependent flow 6 )

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-32
Identity = 70/141 (49.65%), Postives = 88/141 (62.41%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MA+A   F+  N  + SS  H  K     Q   P++     +     +    RGS+    
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPK-----QNSGPNHGYWLSNVNEKRERNLMRGSLCVRK 60

Query: 61  AFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP
Sbjct: 61  ALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYE 141
           +YDSE YR DGGDGTG+WVYE
Sbjct: 121 FYDSEEYRGDGGDGTGYWVYE 136

[Close]
BLAST of CmoCh10G002160 vs. TAIR 10
Match: AT1G18730.4 (NDH dependent flow 6 )

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-32
Identity = 70/141 (49.65%), Postives = 88/141 (62.41%), Query Frame = 0 

Query: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MA+A   F+  N  + SS  H  K     Q   P++     +     +    RGS+    
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPK-----QNSGPNHGYWLSNVNEKRERNLMRGSLCVRK 60

Query: 61  AFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP
Sbjct: 61  ALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYE 141
           +YDSE YR DGGDGTG+WVYE
Sbjct: 121 FYDSEEYRGDGGDGTGYWVYE 136

The following BLAST results are available for this feature:
BLAST of CmoCh10G002160 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8RXS13.5e-4958.56Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thali... [more]
BLAST of CmoCh10G002160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E2I65.5e-98100.00photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita mo... [more]
A0A6J1JG677.9e-9798.31photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita ma... [more]
A0A5A7UWT71.5e-8287.64Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S3BVN61.5e-8287.64photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucumis melo OX=3... [more]
A0A6J1EZP23.2e-8286.03photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucurbita moschat... [more]
BLAST of CmoCh10G002160 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022921851.11.1e-97100.00photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita mosc... [more]
XP_022987205.11.6e-9698.31photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxi... [more]
XP_023516363.12.8e-9698.31photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo... [more]
KAG6589514.11.8e-90100.00Expansin-A1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_038880039.12.1e-8387.08photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida][more]
BLAST of CmoCh10G002160 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G18730.12.5e-5058.56NDH dependent flow 6 [more]
AT1G18730.32.1e-4957.54NDH dependent flow 6 [more]
AT1G18730.23.0e-3249.65NDH dependent flow 6 [more]
AT1G18730.43.0e-3249.65NDH dependent flow 6 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 155..175
IPR034570Photosynthetic NDH subunit of subcomplex B 4, chloroplasticPANTHERPTHR36315PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 4, CHLOROPLASTICcoord: 1..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G002160.1CmoCh10G002160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009773 photosynthetic electron transport in photosystem I
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)