CmoCh10G001840 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G001840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	zinc finger protein BRUTUS-like At1g74770
Location	Cmo_Chr10: 837219 .. 837795 (+)
RNA-Seq Expression	CmoCh10G001840
Synteny	CmoCh10G001840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTTCATAAACCTCCCCCATTCCCCCCCTTCCCTCCTTCCGGATGCCAAATCTCCCTTCCTCTTCTTTCATGGGCGTCGGATTCCCCCTCCGACCTACTGGACCTCTATCTTCCTTGCATGGACGGCGCCACCGCCGCCTCTCTTGATCGCTCCTCCCACGCAAATCAATATCATGAAACGCCGGAAGCGCCGGAAGATTTCTACGCCGATTCCGGACTCTCACATCTTCCGCTGGCCGAGGCTCCGGTTCTAGTGCTTATTAAATTCCACACAGCGCTGCGATCCGAGCTTGCGGATTTACGGCGCGTGACGTTGGCCGCGGCGGAGAGTGGGTGTTATGGCCGCGAGTTCGTGTCGGAATTGATTCGGAGAGTCGAGTTTCTGAAACTTGCTTATAAGTACCATTGCGCCGCCGAGGATGAGGTAAGGGTTTCCATCTATTACTTATACGTATCGTTTCGTTACTCATAAAAACTGCGATCCAAAATTTGCGTTATGTTTTGTATTTCATTTCTTCTGGATTCGCCACTTTGACTTTTTTATCGTTTTTTTTTTTTAAGTATAGTCCACGTAA

mRNA sequence

TTCCTTCATAAACCTCCCCCATTCCCCCCCTTCCCTCCTTCCGGATGCCAAATCTCCCTTCCTCTTCTTTCATGGGCGTCGGATTCCCCCTCCGACCTACTGGACCTCTATCTTCCTTGCATGGACGGCGCCACCGCCGCCTCTCTTGATCGCTCCTCCCACGCAAATCAATATCATGAAACGCCGGAAGCGCCGGAAGATTTCTACGCCGATTCCGGACTCTCACATCTTCCGCTGGCCGAGGCTCCGGTTCTAGTGCTTATTAAATTCCACACAGCGCTGCGATCCGAGCTTGCGGATTTACGGCGCGTGACGTTGGCCGCGGCGGAGAGTGGGTGTTATGGCCGCGAGTTCGTGTCGGAATTGATTCGGAGAGTCGAGTTTCTGAAACTTGCTTATAAGTACCATTGCGCCGCCGAGGATGAGTCCACGTAA

Coding sequence (CDS)

ATGGACGGCGCCACCGCCGCCTCTCTTGATCGCTCCTCCCACGCAAATCAATATCATGAAACGCCGGAAGCGCCGGAAGATTTCTACGCCGATTCCGGACTCTCACATCTTCCGCTGGCCGAGGCTCCGGTTCTAGTGCTTATTAAATTCCACACAGCGCTGCGATCCGAGCTTGCGGATTTACGGCGCGTGACGTTGGCCGCGGCGGAGAGTGGGTGTTATGGCCGCGAGTTCGTGTCGGAATTGATTCGGAGAGTCGAGTTTCTGAAACTTGCTTATAAGTACCATTGCGCCGCCGAGGATGAGTCCACGTAA

Protein sequence

MDGATAASLDRSSHANQYHETPEAPEDFYADSGLSHLPLAEAPVLVLIKFHTALRSELADLRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDEST

Homology

[Close]

BLAST of CmoCh10G001840 vs. ExPASy Swiss-Prot
Match: F4HVS0 (Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-10
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 39  LAEAPVLVLIKFHTALRSELADLRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCA 98
           L++APVL  +  H A R++L +LRR    AAE+  +  +   EL R+ EFLKL YKYH A
Sbjct: 29  LSDAPVLFFVYCHKAFRAQLVELRRFATDAAEADSFSGDLAVELSRKFEFLKLVYKYHSA 88

Query: 99  AEDE 103
           AEDE
Sbjct: 89  AEDE 92

[Close]

BLAST of CmoCh10G001840 vs. ExPASy Swiss-Prot
Match: F4IDY5 (Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-08
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 32  SGLSHLPLAEAPVLVLIKFHTALRSELADLRRVTLAAAESGCYGREFVSELIRRVEFLKL 91
           S +++  L++AP+L+ + FH A R++LA+L+     A ++   G +   EL  + EFLKL
Sbjct: 33  SAVNNARLSDAPILLFVYFHKAFRAQLAELQ---FLAGDTVRSGSDLAVELRSKFEFLKL 92

Query: 92  AYKYHCAAEDE 103
            YKYH AAEDE
Sbjct: 93  VYKYHSAAEDE 100

[Close]

BLAST of CmoCh10G001840 vs. ExPASy TrEMBL
Match: A0A6J1E4B0 (zinc finger protein BRUTUS-like At1g74770 OS=Cucurbita moschata OX=3662 GN=LOC111429807 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.8e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MDGATAASLDRSSHANQYHETPEAPEDFYADSGLSHLPLAEAPVLVLIKFHTALRSELAD 60
           MDGATAASLDRSSHANQYHETPEAPEDFYADSGLSHLPLAEAPVLVLIKFHTALRSELAD
Sbjct: 1   MDGATAASLDRSSHANQYHETPEAPEDFYADSGLSHLPLAEAPVLVLIKFHTALRSELAD 60

Query: 61  LRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE 103
           LRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE
Sbjct: 61  LRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE 102

[Close]

BLAST of CmoCh10G001840 vs. ExPASy TrEMBL
Match: A0A6J1JLZ8 (zinc finger protein BRUTUS-like At1g74770 OS=Cucurbita maxima OX=3661 GN=LOC111485604 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.5e-47
Identity = 97/102 (95.10%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MDGATAASLDRSSHANQYHETPEAPEDFYADSGLSHLPLAEAPVLVLIKFHTALRSELAD 60
           MDGATAASLDRSSHANQYHETPE PEDFY+DSGLSH+PLA+APVLVLIKFHTALRSELAD
Sbjct: 1   MDGATAASLDRSSHANQYHETPETPEDFYSDSGLSHVPLAQAPVLVLIKFHTALRSELAD 60

Query: 61  LRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE 103
           LRRVTLAAAESGCYG EFVSELIRRVEFLKLAYKYHCAAEDE
Sbjct: 61  LRRVTLAAAESGCYGCEFVSELIRRVEFLKLAYKYHCAAEDE 102

[Close]

BLAST of CmoCh10G001840 vs. ExPASy TrEMBL
Match: A0A5D3BHS5 (Zinc finger protein BRUTUS-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002290 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-28
Identity = 74/103 (71.84%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1   MDGATAASLDRSSHANQYHETPEAPED-FYADSGLSHLPLAEAPVLVLIKFHTALRSELA 60
           MDGA A S D S H +     PEA ED +Y+DSGL  + L EAP+L+LIKFH ALR E+A
Sbjct: 1   MDGAAADSSDSSLHHDLPFTPPEAAEDHYYSDSGLFRVSLTEAPILLLIKFHRALRLEVA 60

Query: 61  DLRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE 103
           DLRRVTLAAAESG YG EFVS LIRRVEFLKLAYKYHCAAEDE
Sbjct: 61  DLRRVTLAAAESGGYGGEFVSGLIRRVEFLKLAYKYHCAAEDE 103

[Close]

BLAST of CmoCh10G001840 vs. ExPASy TrEMBL
Match: A0A5A7US14 (Zinc finger protein BRUTUS-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002210 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-28
Identity = 74/103 (71.84%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1   MDGATAASLDRSSHANQYHETPEAPED-FYADSGLSHLPLAEAPVLVLIKFHTALRSELA 60
           MDGA A S D S H +     PEA ED +Y+DSGL  + L EAP+L+LIKFH ALR E+A
Sbjct: 1   MDGAAADSSDSSLHHDLPFTPPEAAEDHYYSDSGLFRVSLTEAPILLLIKFHRALRLEVA 60

Query: 61  DLRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE 103
           DLRRVTLAAAESG YG EFVS LIRRVEFLKLAYKYHCAAEDE
Sbjct: 61  DLRRVTLAAAESGGYGGEFVSGLIRRVEFLKLAYKYHCAAEDE 103

[Close]

BLAST of CmoCh10G001840 vs. ExPASy TrEMBL
Match: A0A1S3BWQ4 (uncharacterized protein LOC103493963 OS=Cucumis melo OX=3656 GN=LOC103493963 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-28
Identity = 74/103 (71.84%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1   MDGATAASLDRSSHANQYHETPEAPED-FYADSGLSHLPLAEAPVLVLIKFHTALRSELA 60
           MDGA A S D S H +     PEA ED +Y+DSGL  + L EAP+L+LIKFH ALR E+A
Sbjct: 1   MDGAAADSSDSSLHHDLPFTPPEAAEDHYYSDSGLFRVSLTEAPILLLIKFHRALRLEVA 60

Query: 61  DLRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE 103
           DLRRVTLAAAESG YG EFVS LIRRVEFLKLAYKYHCAAEDE
Sbjct: 61  DLRRVTLAAAESGGYGGEFVSGLIRRVEFLKLAYKYHCAAEDE 103

[Close]

BLAST of CmoCh10G001840 vs. NCBI nr
Match: XP_022921588.1 (zinc finger protein BRUTUS-like At1g74770 [Cucurbita moschata])

HSP 1 Score: 204.1 bits (518), Expect = 5.7e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MDGATAASLDRSSHANQYHETPEAPEDFYADSGLSHLPLAEAPVLVLIKFHTALRSELAD 60
           MDGATAASLDRSSHANQYHETPEAPEDFYADSGLSHLPLAEAPVLVLIKFHTALRSELAD
Sbjct: 1   MDGATAASLDRSSHANQYHETPEAPEDFYADSGLSHLPLAEAPVLVLIKFHTALRSELAD 60

Query: 61  LRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE 103
           LRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE
Sbjct: 61  LRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE 102

[Close]

BLAST of CmoCh10G001840 vs. NCBI nr
Match: XP_023515640.1 (zinc finger protein BRUTUS-like At1g74770 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MDGATAASLDRSSHANQYHETPEAPEDFYADSGLSHLPLAEAPVLVLIKFHTALRSELAD 60
           MDGATAASLDRSSHANQYHETPEAPEDFY+DSGLSHLPLAEAPVLVLIKFHTALRSELAD
Sbjct: 1   MDGATAASLDRSSHANQYHETPEAPEDFYSDSGLSHLPLAEAPVLVLIKFHTALRSELAD 60

Query: 61  LRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE 103
           LRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE
Sbjct: 61  LRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE 102

[Close]

BLAST of CmoCh10G001840 vs. NCBI nr
Match: KAG7023174.1 (Zinc finger protein BRUTUS-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.1 bits (497), Expect = 1.6e-46
Identity = 100/105 (95.24%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MDGATAASLDRSSHANQYH---ETPEAPEDFYADSGLSHLPLAEAPVLVLIKFHTALRSE 60
           MDGATAASLDRSSHANQYH   ETPEAPEDFY+DSGLSHLPLAEAPVLVLIKFHTALRSE
Sbjct: 1   MDGATAASLDRSSHANQYHETPETPEAPEDFYSDSGLSHLPLAEAPVLVLIKFHTALRSE 60

Query: 61  LADLRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE 103
           LADLRRVTLAAAESGCYGR+FVSELIRRVEFLKLAYKYHCAAEDE
Sbjct: 61  LADLRRVTLAAAESGCYGRKFVSELIRRVEFLKLAYKYHCAAEDE 105

[Close]

BLAST of CmoCh10G001840 vs. NCBI nr
Match: XP_022988328.1 (zinc finger protein BRUTUS-like At1g74770 [Cucurbita maxima])

HSP 1 Score: 196.1 bits (497), Expect = 1.6e-46
Identity = 97/102 (95.10%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MDGATAASLDRSSHANQYHETPEAPEDFYADSGLSHLPLAEAPVLVLIKFHTALRSELAD 60
           MDGATAASLDRSSHANQYHETPE PEDFY+DSGLSH+PLA+APVLVLIKFHTALRSELAD
Sbjct: 1   MDGATAASLDRSSHANQYHETPETPEDFYSDSGLSHVPLAQAPVLVLIKFHTALRSELAD 60

Query: 61  LRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE 103
           LRRVTLAAAESGCYG EFVSELIRRVEFLKLAYKYHCAAEDE
Sbjct: 61  LRRVTLAAAESGCYGCEFVSELIRRVEFLKLAYKYHCAAEDE 102

[Close]

BLAST of CmoCh10G001840 vs. NCBI nr
Match: KAG6589489.1 (Zinc finger protein BRUTUS-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.1 bits (497), Expect = 1.6e-46
Identity = 100/105 (95.24%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MDGATAASLDRSSHANQYH---ETPEAPEDFYADSGLSHLPLAEAPVLVLIKFHTALRSE 60
           MDGATAASLDRSSHANQYH   ETPEAPEDFY+DSGLSHLPLAEAPVLVLIKFHTALRSE
Sbjct: 1   MDGATAASLDRSSHANQYHETPETPEAPEDFYSDSGLSHLPLAEAPVLVLIKFHTALRSE 60

Query: 61  LADLRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDE 103
           LADLRRVTLAAAESGCYGR+FVSELIRRVEFLKLAYKYHCAAEDE
Sbjct: 61  LADLRRVTLAAAESGCYGRKFVSELIRRVEFLKLAYKYHCAAEDE 105

[Close]

BLAST of CmoCh10G001840 vs. TAIR 10
Match: AT1G74770.1 (zinc ion binding )

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 39  LAEAPVLVLIKFHTALRSELADLRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCA 98
           L++APVL  +  H A R++L +LRR    AAE+  +  +   EL R+ EFLKL YKYH A
Sbjct: 29  LSDAPVLFFVYCHKAFRAQLVELRRFATDAAEADSFSGDLAVELSRKFEFLKLVYKYHSA 88

Query: 99  AEDE 103
           AEDE
Sbjct: 89  AEDE 92

[Close]

BLAST of CmoCh10G001840 vs. TAIR 10
Match: AT1G18910.1 (zinc ion binding;zinc ion binding )

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-09
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 32  SGLSHLPLAEAPVLVLIKFHTALRSELADLRRVTLAAAESGCYGREFVSELIRRVEFLKL 91
           S +++  L++AP+L+ + FH A R++LA+L+     A ++   G +   EL  + EFLKL
Sbjct: 33  SAVNNARLSDAPILLFVYFHKAFRAQLAELQ---FLAGDTVRSGSDLAVELRSKFEFLKL 92

Query: 92  AYKYHCAAEDE 103
            YKYH AAEDE
Sbjct: 93  VYKYHSAAEDE 100

[Close]

BLAST of CmoCh10G001840 vs. TAIR 10
Match: AT3G18290.1 (zinc finger protein-related )

HSP 1 Score: 43.9 bits (102), Expect = 9.2e-05
Identity = 26/62 (41.94%), Postives = 35/62 (56.45%), Query Frame = 0


Query: 42  APVLVLIKFHTALRSELADLRRVTLAAAESGCYGREFVSELIR-RVEFLKLAYKYHCAAE 101
           +P+L+ + FH A+ SEL  L R+ L  A     G      L+R R  FL+  YK+HC AE
Sbjct: 53  SPILIFLFFHKAVCSELEALHRLALEFAT----GHHVDLRLLRERYRFLRSIYKHHCNAE 110

Query: 102 DE 103
           DE
Sbjct: 113 DE 110

The following BLAST results are available for this feature:

BLAST of CmoCh10G001840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HVS0	3.2e-10	50.00	Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]
F4IDY5	5.1e-08	42.25	Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of CmoCh10G001840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E4B0	2.8e-49	100.00	zinc finger protein BRUTUS-like At1g74770 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1JLZ8	7.5e-47	95.10	zinc finger protein BRUTUS-like At1g74770 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A5D3BHS5	1.2e-28	71.84	Zinc finger protein BRUTUS-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7US14	1.2e-28	71.84	Zinc finger protein BRUTUS-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3BWQ4	1.2e-28	71.84	uncharacterized protein LOC103493963 OS=Cucumis melo OX=3656 GN=LOC103493963 PE=...	[more]

BLAST of CmoCh10G001840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921588.1	5.7e-49	100.00	zinc finger protein BRUTUS-like At1g74770 [Cucurbita moschata]	[more]
XP_023515640.1	1.3e-48	99.02	zinc finger protein BRUTUS-like At1g74770 [Cucurbita pepo subsp. pepo]	[more]
KAG7023174.1	1.6e-46	95.24	Zinc finger protein BRUTUS-like protein, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022988328.1	1.6e-46	95.10	zinc finger protein BRUTUS-like At1g74770 [Cucurbita maxima]	[more]
KAG6589489.1	1.6e-46	95.24	Zinc finger protein BRUTUS-like protein, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of CmoCh10G001840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74770.1	2.3e-11	50.00	zinc ion binding	[more]
AT1G18910.1	3.6e-09	42.25	zinc ion binding;zinc ion binding	[more]
AT3G18290.1	9.2e-05	41.94	zinc finger protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.120.520	nmb1532 protein domain like	coord: 35..104 e-value: 5.4E-6 score: 28.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR21319:SF39	AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED	coord: 34..102
None	No IPR available	PANTHER	PTHR21319	RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	coord: 34..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G001840.1	CmoCh10G001840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055072	iron ion homeostasis
molecular_function	GO:0008270	zinc ion binding