CmoCh10G001090 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G001090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LOB domain-containing protein
Location	Cmo_Chr10: 468151 .. 468702 (+)
RNA-Seq Expression	CmoCh10G001090
Synteny	CmoCh10G001090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCATCAAGTTCTTACAACTCTCCCTGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGTCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAGATCTTTGGGGCCAGCAACGTGACAAAGCTGCTGAATGAACTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCGTATGAGGCCGAAGCCCGAGTCCGGGACCCGGTCTATGGCTGCGTCGGAGCCATCTCCTTCCTCCAAAGGCAAGTCCAGAGGCTCCAGAAGGAACTCGACGCTGCGAATGCCGACCTAATTCGGTACGCATGCAACGAGATACCTAATGCAGGAGTAAGTCATGTGGTTCAACCAAGCCCTGGTGCTCGCCCAAGAGCTTTGGATCAGTTTCATACAAGTTCATCAACTGGGTATTACAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCACTGCCTTGGAATGAAAACTCTCCTGGAAATGACATCAATGAAGGAGGAGGGGATGGCAATATTTGA

mRNA sequence

ATGGCATCATCAAGTTCTTACAACTCTCCCTGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGTCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAGATCTTTGGGGCCAGCAACGTGACAAAGCTGCTGAATGAACTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCGTATGAGGCCGAAGCCCGAGTCCGGGACCCGGTCTATGGCTGCGTCGGAGCCATCTCCTTCCTCCAAAGGCAAGTCCAGAGGCTCCAGAAGGAACTCGACGCTGCGAATGCCGACCTAATTCGGTACGCATGCAACGAGATACCTAATGCAGGAGTAAGTCATGTGGTTCAACCAAGCCCTGGTGCTCGCCCAAGAGCTTTGGATCAGTTTCATACAAGTTCATCAACTGGGTATTACAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCACTGCCTTGGAATGAAAACTCTCCTGGAAATGACATCAATGAAGGAGGAGGGGATGGCAATATTTGA

Coding sequence (CDS)

ATGGCATCATCAAGTTCTTACAACTCTCCCTGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGTCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAGATCTTTGGGGCCAGCAACGTGACAAAGCTGCTGAATGAACTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCGTATGAGGCCGAAGCCCGAGTCCGGGACCCGGTCTATGGCTGCGTCGGAGCCATCTCCTTCCTCCAAAGGCAAGTCCAGAGGCTCCAGAAGGAACTCGACGCTGCGAATGCCGACCTAATTCGGTACGCATGCAACGAGATACCTAATGCAGGAGTAAGTCATGTGGTTCAACCAAGCCCTGGTGCTCGCCCAAGAGCTTTGGATCAGTTTCATACAAGTTCATCAACTGGGTATTACAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCACTGCCTTGGAATGAAAACTCTCCTGGAAATGACATCAATGAAGGAGGAGGGGATGGCAATATTTGA

Protein sequence

MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPNAGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGDGNI

Homology

[Close]

BLAST of CmoCh10G001090 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.4e-56
Identity = 123/186 (66.13%), Postives = 133/186 (71.51%), Query Frame = 0


Query: 2   ASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 61
           +SS+SYNSPCAACKFLRRKCM GCIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNE---- 121
           QREDAVNSLAYEAEARVRDPVYGCVGAIS+LQRQV RLQKELDAANADL  Y  +     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 IPNAGVSHVVQPSP---GARPRALDQFHTSSSTGYYNQHLPAFPMAYP--LPWNENSPGN 179
            P   V  V QP P      P     +  S ++   NQ       +Y   LPWN    G+
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNN---GH 182

[Close]

BLAST of CmoCh10G001090 vs. ExPASy Swiss-Prot
Match: Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 191.0 bits (484), Expect = 1.2e-47
Identity = 89/111 (80.18%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 4   SSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQR 63
           S+  NSPCAACKFLRRKC S C+FAPYFPPEEP KFANVH+IFGASNV+K+L+E+ PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 64  EDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYA 115
           EDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV RLQ+EL+  NADL+RYA
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]

BLAST of CmoCh10G001090 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.9e-44
Identity = 87/145 (60.00%), Postives = 107/145 (73.79%), Query Frame = 0


Query: 3   SSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQ 62
           +SSS NSPCAACKFLRRKC   C+FAPYFPP++PQKFANVHK+FGASNVTKLLNEL P Q
Sbjct: 2   ASSSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQ 61

Query: 63  REDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEI---- 122
           REDAVNSLAYEA+ R+RDPVYGCVG IS LQ Q+++LQ +L  A ++L +Y    I    
Sbjct: 62  REDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGILAAT 121

Query: 123 -PNAGVSHVVQPSPGARPRALDQFH 143
             + G++ +   + G      D +H
Sbjct: 122 HQSLGINLLAGAADGTATAVRDHYH 146

[Close]

BLAST of CmoCh10G001090 vs. ExPASy Swiss-Prot
Match: A2WXT0 (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-39
Identity = 74/105 (70.48%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 9   SPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVN 68
           SPCAACKFLRRKC   C+FAPYFPP+ PQKF +VH++FGASNVTKLLNEL P+QREDAVN
Sbjct: 37  SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVN 96

Query: 69  SLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRY 114
           SLAYEA+ R+RDPVYGCV  IS LQR +++LQ++L  A  +L +Y
Sbjct: 97  SLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKY 141

[Close]

BLAST of CmoCh10G001090 vs. ExPASy Swiss-Prot
Match: Q8LQH4 (LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=LBD6 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-39
Identity = 74/105 (70.48%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 9   SPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVN 68
           SPCAACKFLRRKC   C+FAPYFPP+ PQKF +VH++FGASNVTKLLNEL P+QREDAVN
Sbjct: 37  SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVN 96

Query: 69  SLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRY 114
           SLAYEA+ R+RDPVYGCV  IS LQR +++LQ++L  A  +L +Y
Sbjct: 97  SLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKY 141

[Close]

BLAST of CmoCh10G001090 vs. ExPASy TrEMBL
Match: A0A6J1E272 (LOB domain-containing protein 25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430134 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.3e-102
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120

Query: 121 AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD 180
           AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD
Sbjct: 121 AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD 180

Query: 181 GNI 184
           GNI
Sbjct: 181 GNI 183

[Close]

BLAST of CmoCh10G001090 vs. ExPASy TrEMBL
Match: A0A6J1E5J8 (protein LATERAL ORGAN BOUNDARIES-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430134 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.3e-102
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 59  MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 118

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN
Sbjct: 119 HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 178

Query: 121 AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD 180
           AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD
Sbjct: 179 AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD 238

Query: 181 GNI 184
           GNI
Sbjct: 239 GNI 241

[Close]

BLAST of CmoCh10G001090 vs. ExPASy TrEMBL
Match: A0A6J1JDL4 (LOB domain-containing protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC111485830 PE=3 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.1e-101
Identity = 181/183 (98.91%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120

Query: 121 AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD 180
           AGVSHVVQPSPGARPRALDQ+HTSSSTGYY+QHLPAFPMAYPLPWNENSPGNDINEGGGD
Sbjct: 121 AGVSHVVQPSPGARPRALDQYHTSSSTGYYSQHLPAFPMAYPLPWNENSPGNDINEGGGD 180

Query: 181 GNI 184
           GNI
Sbjct: 181 GNI 183

[Close]

BLAST of CmoCh10G001090 vs. ExPASy TrEMBL
Match: A0A0A0LU81 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G004170 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 3.9e-91
Identity = 171/185 (92.43%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCM GCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIR+ACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120

Query: 121 AGVSH-VVQPSP-GARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGG 180
           AGVSH VVQPS  G+RPRALDQ+HTSS+TGYYN HLPAF MAYPLPWNEN+ GN+INEGG
Sbjct: 121 AGVSHQVVQPSSLGSRPRALDQYHTSSTTGYYN-HLPAFSMAYPLPWNENTSGNNINEGG 180

Query: 181 GDGNI 184
            DGNI
Sbjct: 181 RDGNI 184

[Close]

BLAST of CmoCh10G001090 vs. ExPASy TrEMBL
Match: A0A5A7URN9 (Protein LATERAL ORGAN BOUNDARIES OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001150 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 5.7e-90
Identity = 171/186 (91.94%), Postives = 178/186 (95.70%), Query Frame = 0


Query: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCM GCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIR+ACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120

Query: 121 AGVSH-VVQPSPGA-RPR-ALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEG 180
           AGVSH VVQPS G+ RPR ALDQ+HTSS++GYYN HLPAFPMAYPLPWNEN+ GN+INEG
Sbjct: 121 AGVSHQVVQPSLGSTRPRAALDQYHTSSTSGYYN-HLPAFPMAYPLPWNENASGNNINEG 180

Query: 181 GGDGNI 184
           G DGNI
Sbjct: 181 GRDGNI 185

[Close]

BLAST of CmoCh10G001090 vs. NCBI nr
Match: KAG6589428.1 (Protein LATERAL ORGAN BOUNDARIES, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 382.1 bits (980), Expect = 2.7e-102
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 30  MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 89

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN
Sbjct: 90  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 149

Query: 121 AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD 180
           AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD
Sbjct: 150 AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD 209

Query: 181 GNI 184
           GNI
Sbjct: 210 GNI 212

[Close]

BLAST of CmoCh10G001090 vs. NCBI nr
Match: XP_022922076.1 (LOB domain-containing protein 25-like isoform X2 [Cucurbita moschata] >XP_022922077.1 LOB domain-containing protein 25-like isoform X2 [Cucurbita moschata] >XP_022922078.1 LOB domain-containing protein 25-like isoform X2 [Cucurbita moschata] >KAG7023106.1 Protein LATERAL ORGAN BOUNDARIES [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 382.1 bits (980), Expect = 2.7e-102
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120

Query: 121 AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD 180
           AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD
Sbjct: 121 AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD 180

Query: 181 GNI 184
           GNI
Sbjct: 181 GNI 183

[Close]

BLAST of CmoCh10G001090 vs. NCBI nr
Match: XP_022922073.1 (protein LATERAL ORGAN BOUNDARIES-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 382.1 bits (980), Expect = 2.7e-102
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 59  MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 118

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN
Sbjct: 119 HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 178

Query: 121 AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD 180
           AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD
Sbjct: 179 AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD 238

Query: 181 GNI 184
           GNI
Sbjct: 239 GNI 241

[Close]

BLAST of CmoCh10G001090 vs. NCBI nr
Match: XP_023515750.1 (protein LATERAL ORGAN BOUNDARIES-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.9 bits (977), Expect = 6.0e-102
Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120

Query: 121 AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD 180
           AGVSHVVQPSPGARPRALDQ+HTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD
Sbjct: 121 AGVSHVVQPSPGARPRALDQYHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD 180

Query: 181 GNI 184
           GNI
Sbjct: 181 GNI 183

[Close]

BLAST of CmoCh10G001090 vs. NCBI nr
Match: XP_022988641.1 (LOB domain-containing protein 25-like [Cucurbita maxima] >XP_022988642.1 LOB domain-containing protein 25-like [Cucurbita maxima])

HSP 1 Score: 379.0 bits (972), Expect = 2.3e-101
Identity = 181/183 (98.91%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120

Query: 121 AGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGD 180
           AGVSHVVQPSPGARPRALDQ+HTSSSTGYY+QHLPAFPMAYPLPWNENSPGNDINEGGGD
Sbjct: 121 AGVSHVVQPSPGARPRALDQYHTSSSTGYYSQHLPAFPMAYPLPWNENSPGNDINEGGGD 180

Query: 181 GNI 184
           GNI
Sbjct: 181 GNI 183

[Close]

BLAST of CmoCh10G001090 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 220.7 bits (561), Expect = 9.6e-58
Identity = 123/186 (66.13%), Postives = 133/186 (71.51%), Query Frame = 0


Query: 2   ASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 61
           +SS+SYNSPCAACKFLRRKCM GCIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNE---- 121
           QREDAVNSLAYEAEARVRDPVYGCVGAIS+LQRQV RLQKELDAANADL  Y  +     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 IPNAGVSHVVQPSP---GARPRALDQFHTSSSTGYYNQHLPAFPMAYP--LPWNENSPGN 179
            P   V  V QP P      P     +  S ++   NQ       +Y   LPWN    G+
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNN---GH 182

[Close]

BLAST of CmoCh10G001090 vs. TAIR 10
Match: AT5G63090.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 220.7 bits (561), Expect = 9.6e-58
Identity = 123/186 (66.13%), Postives = 133/186 (71.51%), Query Frame = 0


Query: 2   ASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 61
           +SS+SYNSPCAACKFLRRKCM GCIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNE---- 121
           QREDAVNSLAYEAEARVRDPVYGCVGAIS+LQRQV RLQKELDAANADL  Y  +     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 IPNAGVSHVVQPSP---GARPRALDQFHTSSSTGYYNQHLPAFPMAYP--LPWNENSPGN 179
            P   V  V QP P      P     +  S ++   NQ       +Y   LPWN    G+
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNN---GH 182

[Close]

BLAST of CmoCh10G001090 vs. TAIR 10
Match: AT5G63090.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 220.7 bits (561), Expect = 9.6e-58
Identity = 123/186 (66.13%), Postives = 133/186 (71.51%), Query Frame = 0


Query: 2   ASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 61
           +SS+SYNSPCAACKFLRRKCM GCIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNE---- 121
           QREDAVNSLAYEAEARVRDPVYGCVGAIS+LQRQV RLQKELDAANADL  Y  +     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 IPNAGVSHVVQPSP---GARPRALDQFHTSSSTGYYNQHLPAFPMAYP--LPWNENSPGN 179
            P   V  V QP P      P     +  S ++   NQ       +Y   LPWN    G+
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNN---GH 182

[Close]

BLAST of CmoCh10G001090 vs. TAIR 10
Match: AT5G63090.4 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 220.7 bits (561), Expect = 9.6e-58
Identity = 123/186 (66.13%), Postives = 133/186 (71.51%), Query Frame = 0


Query: 2   ASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 61
           +SS+SYNSPCAACKFLRRKCM GCIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNE---- 121
           QREDAVNSLAYEAEARVRDPVYGCVGAIS+LQRQV RLQKELDAANADL  Y  +     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 IPNAGVSHVVQPSP---GARPRALDQFHTSSSTGYYNQHLPAFPMAYP--LPWNENSPGN 179
            P   V  V QP P      P     +  S ++   NQ       +Y   LPWN    G+
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNN---GH 182

[Close]

BLAST of CmoCh10G001090 vs. TAIR 10
Match: AT3G27650.1 (LOB domain-containing protein 25 )

HSP 1 Score: 191.0 bits (484), Expect = 8.2e-49
Identity = 89/111 (80.18%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 4   SSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQR 63
           S+  NSPCAACKFLRRKC S C+FAPYFPPEEP KFANVH+IFGASNV+K+L+E+ PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 64  EDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYA 115
           EDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV RLQ+EL+  NADL+RYA
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

The following BLAST results are available for this feature:

BLAST of CmoCh10G001090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FML4	1.4e-56	66.13	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
Q8L8Q3	1.2e-47	80.18	LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S...	[more]
O04479	5.9e-44	60.00	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
A2WXT0	1.2e-39	70.48	LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 P...	[more]
Q8LQH4	1.2e-39	70.48	LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=LBD6...	[more]

BLAST of CmoCh10G001090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E272	1.3e-102	100.00	LOB domain-containing protein 25-like isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1E5J8	1.3e-102	100.00	protein LATERAL ORGAN BOUNDARIES-like isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JDL4	1.1e-101	98.91	LOB domain-containing protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC11148583...	[more]
A0A0A0LU81	3.9e-91	92.43	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G004170 PE=3 SV...	[more]
A0A5A7URN9	5.7e-90	91.94	Protein LATERAL ORGAN BOUNDARIES OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

BLAST of CmoCh10G001090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589428.1	2.7e-102	100.00	Protein LATERAL ORGAN BOUNDARIES, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022922076.1	2.7e-102	100.00	LOB domain-containing protein 25-like isoform X2 [Cucurbita moschata] >XP_022922...	[more]
XP_022922073.1	2.7e-102	100.00	protein LATERAL ORGAN BOUNDARIES-like isoform X1 [Cucurbita moschata]	[more]
XP_023515750.1	6.0e-102	99.45	protein LATERAL ORGAN BOUNDARIES-like [Cucurbita pepo subsp. pepo]	[more]
XP_022988641.1	2.3e-101	98.91	LOB domain-containing protein 25-like [Cucurbita maxima] >XP_022988642.1 LOB dom...	[more]

BLAST of CmoCh10G001090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63090.2	9.6e-58	66.13	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.3	9.6e-58	66.13	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.1	9.6e-58	66.13	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.4	9.6e-58	66.13	Lateral organ boundaries (LOB) domain family protein	[more]
AT3G27650.1	8.2e-49	80.18	LOB domain-containing protein 25	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 89..116
None	No IPR available	PANTHER	PTHR31301:SF82	ELONGATED PETIOLULE 1	coord: 1..182
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 1..182
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 10..107 e-value: 4.9E-42 score: 142.5
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 9..110 score: 27.767378

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G001090.1	CmoCh10G001090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane