CmoCh10G001020 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G001020
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ATP-dependent RNA helicase
Location	Cmo_Chr10: 438031 .. 439518 (+)
RNA-Seq Expression	CmoCh10G001020
Synteny	CmoCh10G001020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGTTTATGAACACTAATGATGTAAATCCTGTCTATCAATGGGTCAGTAAGGATAGTGAGAAGGTAGAGACTTTGATGAGTAAGGTGCCTGAGATTTTGGTCCTCTATAGTTATCCGAGCATTCTATTGGTACCCATCCACAATTATGGAGCTGGTTGTTTTGTAGCCTGGTTGACTCATTCATTATTGCATTGTTGGTATGGAAGTCGTCGTGGTGACAGCTGCTACTTATCCCTGCAAAGTTAAGGTGGGCACATTTATGTAGTAATGAATGTGTTATCTTACTTTTGGTCATCAGATCTTAGGAATGCAGGGATAAGGTTTTTTGCAGTTTTATCCATGCTCCCATGTTGCATGTATATATTTAATCTAACTATGACTCTCTGCTGTAGATGTGAAAGATATAAAATGTGTGATCAACTATGATTTCCCATCAAGCCTCGAGGATTATGTCCACAGAATAGGCCGAACGGGGCGTGCTGGTGCAAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGCGAAACACGCCAGAGAGCTTATAAAGATACTGCGAGAAGCAGGGCAGATCGTCTCCCCTGCATTGTCTGCTTTAGCCTCGTCTAGTGGCACTGGAGGTAACCTTCGTTTCTCCTAATCATCAGGATGGATAGTAGCATCTGATGTCAGAAGTGGTTGGCTGATTACAATTCGAAATTATTGTTTCTTCTTTTTTTTGGTGTAGGTTCTAGCTCTAAATACCGCCCTCAAGGTCACAGAGGCTTTGGTGGTAACCGAACAATGGTTTCAGGACCAAATGCGATCCCTATTGGTTTGACGAGACCAAGGCCTCGCTAGCTTTTCGCACGAGTTGGAAGGAAGCATATAAGCTAGATAAGTAGTGTATTTCAGAAATGTGGACCATTTTCATTGTGTAGTATAGTTTGAGTTATTACTAGAATAGCAATTTAGTATTGTTTGGTATGAAAAATGGACATGTGGGCATATGTGTATATAAAACCAGATTACTGGTAGACATTGCTGAGGGTGTTTGTATTAGGTCTGGTGGTTGTTGGGTTGGTGAAGGTGAAGGTGAAGAAGAAAGAAAATGAGAAGCCTATGGCTATTTTTCCCAACCTCTTCAAATTGTGATTTGATTTTGATTAAGCTTACATAACCTTAGAGGGCCCCTTTACCTTTAGTACTTCATAAGGATAATTTCATTTTAGGTAAAGAATTTATTTGGATCTCTCCCTCCTATTTGTGTTGTAAACCAGACAAAAGGCCTTCATTCATTTAGAGTATTCTTCATAATACGACTGCTGTCCTTTGCTTCTTTCTGCATAGCATCCGCCTTCCGAACAAGGCATACACATTTTCCTCTTTAGGCTGTTTCTCTTGGAAGTTTTTAAAATGCGCATGTTAGGAGATGTTAAGTGAAGGGTTTCTAAATGATTCGTTTTCTTCTAGGATCTCCACAATCCCCGCCCCCTTCGAGGCCTA

mRNA sequence

ATGCTGTTTATGAACACTAATGATGTAAATCCTGTCTATCAATGGGTCAGTAAGGATAGTGAGAAGGTAGAGACTTTGATGAGTAAGGTGCCTGAGATTTTGGTCCTCTATAGTTATCCGAGCATTCTATTGGTACCCATCCACAATTATGGAGCTGGTTGTTTTGTAGCCTGGTTGACTCATTCATTATTGCATTGTTGGTATGGAAGTCGTCGTGGTGACAGCTGCTACTTATCCCTGCAAAATGTGAAAGATATAAAATGTGTGATCAACTATGATTTCCCATCAAGCCTCGAGGATTATGTCCACAGAATAGGCCGAACGGGGCGTGCTGGTGCAAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGCGAAACACGCCAGAGAGCTTATAAAGATACTGCGAGAAGCAGGGCAGATCGTCTCCCCTGCATTGTCTGCTTTAGCCTCGTCTAGTGGCACTGGAGGTTCTAGCTCTAAATACCGCCCTCAAGGTCACAGAGGCTTTGGTGGTAACCGAACAATGGTTTCAGGACCAAATGCGATCCCTATTGGTTTGACGAGACCAAGGCCTCGCTAGCTTTTCGCACGAGTTGGAAGGAAGCATATAAGCTAGATAAGTAGTGTATTTCAGAAATGTGGACCATTTTCATTGTGTAGTATAGTTTGAGTTATTACTAGAATAGCAATTTAGTATTGTTTGGTATGAAAAATGGACATGTGGGCATATGTGTATATAAAACCAGATTACTGGTAGACATTGCTGAGGGTGTTTGTATTAGGTCTGGTGGTTGTTGGGTTGGTGAAGGTGAAGGTGAAGAAGAAAGAAAATGAGAAGCCTATGGCTATTTTTCCCAACCTCTTCAAATTGTGATTTGATTTTGATTAAGCTTACATAACCTTAGAGGGCCCCTTTACCTTTAGTACTTCATAAGGATAATTTCATTTTAGGTAAAGAATTTATTTGGATCTCTCCCTCCTATTTGTGTTGTAAACCAGACAAAAGGCCTTCATTCATTTAGAGTATTCTTCATAATACGACTGCTGTCCTTTGCTTCTTTCTGCATAGCATCCGCCTTCCGAACAAGGCATACACATTTTCCTCTTTAGGCTGTTTCTCTTGGAAGTTTTTAAAATGCGCATGTTAGGAGATGTTAAGTGAAGGGTTTCTAAATGATTCGTTTTCTTCTAGGATCTCCACAATCCCCGCCCCCTTCGAGGCCTA

Coding sequence (CDS)

ATGCTGTTTATGAACACTAATGATGTAAATCCTGTCTATCAATGGGTCAGTAAGGATAGTGAGAAGGTAGAGACTTTGATGAGTAAGGTGCCTGAGATTTTGGTCCTCTATAGTTATCCGAGCATTCTATTGGTACCCATCCACAATTATGGAGCTGGTTGTTTTGTAGCCTGGTTGACTCATTCATTATTGCATTGTTGGTATGGAAGTCGTCGTGGTGACAGCTGCTACTTATCCCTGCAAAATGTGAAAGATATAAAATGTGTGATCAACTATGATTTCCCATCAAGCCTCGAGGATTATGTCCACAGAATAGGCCGAACGGGGCGTGCTGGTGCAAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGCGAAACACGCCAGAGAGCTTATAAAGATACTGCGAGAAGCAGGGCAGATCGTCTCCCCTGCATTGTCTGCTTTAGCCTCGTCTAGTGGCACTGGAGGTTCTAGCTCTAAATACCGCCCTCAAGGTCACAGAGGCTTTGGTGGTAACCGAACAATGGTTTCAGGACCAAATGCGATCCCTATTGGTTTGACGAGACCAAGGCCTCGCTAG

Protein sequence

MLFMNTNDVNPVYQWVSKDSEKVETLMSKVPEILVLYSYPSILLVPIHNYGAGCFVAWLTHSLLHCWYGSRRGDSCYLSLQNVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR

Homology

[Close]

BLAST of CmoCh10G001020 vs. ExPASy Swiss-Prot
Match: Q8W4R3 (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana OX=3702 GN=RH30 PE=1 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 3.6e-31
Identity = 72/112 (64.29%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDIKCV+NYDFP++LEDY+HRIGRTGRAGAKG AFTFFTH+NAK AREL+KIL+EAGQ
Sbjct: 475 DVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQ 534

Query: 142 IVSPALSALASSSGTG----GSSSKYRPQ-GHRGFG-GNRTMVSGPNAIPIG 188
           +V P LSAL  SSG+G    G    +RP+ G RG G G++   S  N +P G
Sbjct: 535 VVPPTLSALVRSSGSGYGGSGGGRNFRPRGGGRGGGFGDKRSRSTSNFVPHG 586

[Close]

BLAST of CmoCh10G001020 vs. ExPASy Swiss-Prot
Match: Q5N7W4 (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0911100 PE=2 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 6.7e-30
Identity = 70/110 (63.64%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDIKCVIN+DFP++LEDY+HRIGRTGRAGA GTAFTFFT  NAK +R L+KILREAGQ
Sbjct: 561 DVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNLVKILREAGQ 620

Query: 142 IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRP 192
           +V+PAL ++A S+ + G  + +R +G  GF GNR   SG N+IPI   RP
Sbjct: 621 VVNPALESMAKSASSMGGGN-FRSRGRGGF-GNR---SGSNSIPIRGRRP 665

[Close]

BLAST of CmoCh10G001020 vs. ExPASy Swiss-Prot
Match: G0SFM2 (ATP-dependent RNA helicase DBP2 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=DBP2 PE=3 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 6.5e-25
Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +V++I  VINYD+P++ EDY+HRIGRTGRAGAKGTA TFFT ENAK AR+L+ +L+EA Q
Sbjct: 443 DVRNITHVINYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENAKQARDLVSVLQEAKQ 502

Query: 142 IVSPALSALASSSGTGGSS--SKYRPQGHRGF-GGNRTMV-SGPNAIPIGLTR 191
            V P L  +A  SG GGSS    YR +G  G+ GG+R+   SG NA+P+   R
Sbjct: 503 HVDPRLLEMARYSGGGGSSRYGGYRGRGGGGYRGGHRSAAHSGANAVPVANRR 555

[Close]

BLAST of CmoCh10G001020 vs. ExPASy Swiss-Prot
Match: Q2H720 (ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DBP2 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.5e-24
Identity = 58/112 (51.79%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +V++I  V+NYD+P++ EDY+HRIGRTGRAGAKGTA TFFT +N+K AR+L+ +L+EA Q
Sbjct: 450 DVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQARDLVGVLQEAKQ 509

Query: 142 IVSPALSALASSSGTGGSS--SKYRPQGHRGFGGNRTM-VSGPNAIPIGLTR 191
            + P L+ +    G GG+S    YR +G  GF G R+   +GPNA+P+G  R
Sbjct: 510 HIDPRLAEMVRYGGGGGNSRYGGYRGRGGGGFRGGRSQGANGPNAMPMGNRR 561

[Close]

BLAST of CmoCh10G001020 vs. ExPASy Swiss-Prot
Match: Q5QMN3 (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0197200 PE=3 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 9.4e-24
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKD+K VINYDFP SLEDYVHRIGRTGRAGAKGTA+TFFT  NA+ A++LI IL EAGQ
Sbjct: 401 DVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKDLINILEEAGQ 460

Query: 142 IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRT 177
            VSP L+ +    G    SS +R + +RG+GG R+
Sbjct: 461 KVSPELANM--GRGAPPPSSGHRDR-YRGYGGGRS 492

[Close]

BLAST of CmoCh10G001020 vs. ExPASy TrEMBL
Match: A0A6J1HMK2 (DEAD-box ATP-dependent RNA helicase 20-like OS=Cucurbita moschata OX=3662 GN=LOC111464981 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.7e-55
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ
Sbjct: 501 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 560

Query: 142 IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 195
           IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR
Sbjct: 561 IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 613

[Close]

BLAST of CmoCh10G001020 vs. ExPASy TrEMBL
Match: A0A6J1JDK6 (DEAD-box ATP-dependent RNA helicase 20-like OS=Cucurbita maxima OX=3661 GN=LOC111484847 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.8e-54
Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ
Sbjct: 501 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 560

Query: 142 IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 195
           IVSPALSALA+SS TGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR
Sbjct: 561 IVSPALSALATSSATGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 613

[Close]

BLAST of CmoCh10G001020 vs. ExPASy TrEMBL
Match: A0A0A0LP25 (Helicase C-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G004090 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 5.3e-46
Identity = 99/112 (88.39%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           NVKDIKCVIN+DFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHAR+LIKILREAGQ
Sbjct: 20  NVKDIKCVINFDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 79

Query: 142 IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGL-TRPR 193
           IV+PALSALASSSG GGS +K+R QGHRG  GNRTMVSG NAIP+GL TRPR
Sbjct: 80  IVTPALSALASSSGFGGSGAKFRSQGHRGGFGNRTMVSGSNAIPLGLTTRPR 131

[Close]

BLAST of CmoCh10G001020 vs. ExPASy TrEMBL
Match: A0A5A7URR2 (DEAD-box ATP-dependent RNA helicase 20 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001090 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 9.1e-46
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHAR+LIKILREAGQ
Sbjct: 511 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 570

Query: 142 IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGL-TRPR 193
           IV+PALS LASSSG GGS +K+RPQGHRG  G+RTMVSG NAIP+GL TRPR
Sbjct: 571 IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 622

[Close]

BLAST of CmoCh10G001020 vs. ExPASy TrEMBL
Match: A0A5D3BJX7 (DEAD-box ATP-dependent RNA helicase 20 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001110 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 9.1e-46
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHAR+LIKILREAGQ
Sbjct: 511 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 570

Query: 142 IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGL-TRPR 193
           IV+PALS LASSSG GGS +K+RPQGHRG  G+RTMVSG NAIP+GL TRPR
Sbjct: 571 IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 622

[Close]

BLAST of CmoCh10G001020 vs. NCBI nr
Match: XP_022965035.1 (DEAD-box ATP-dependent RNA helicase 20-like [Cucurbita moschata])

HSP 1 Score: 225.7 bits (574), Expect = 3.4e-55
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ
Sbjct: 501 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 560

Query: 142 IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 195
           IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR
Sbjct: 561 IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 613

[Close]

BLAST of CmoCh10G001020 vs. NCBI nr
Match: KAG6589422.1 (DEAD-box ATP-dependent RNA helicase 30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.4 bits (568), Expect = 1.7e-54
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ
Sbjct: 737 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 796

Query: 142 IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 195
           IVSPALSALASSS TGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR
Sbjct: 797 IVSPALSALASSSATGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 849

[Close]

BLAST of CmoCh10G001020 vs. NCBI nr
Match: XP_023516950.1 (DEAD-box ATP-dependent RNA helicase 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.4 bits (568), Expect = 1.7e-54
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ
Sbjct: 501 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 560

Query: 142 IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 195
           IVSPALSALASSS TGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR
Sbjct: 561 IVSPALSALASSSATGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 613

[Close]

BLAST of CmoCh10G001020 vs. NCBI nr
Match: KAG7023100.1 (DEAD-box ATP-dependent RNA helicase 30, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.4 bits (568), Expect = 1.7e-54
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ
Sbjct: 741 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 800

Query: 142 IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 195
           IVSPALSALASSS TGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR
Sbjct: 801 IVSPALSALASSSATGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 853

[Close]

BLAST of CmoCh10G001020 vs. NCBI nr
Match: XP_022987231.1 (DEAD-box ATP-dependent RNA helicase 20-like [Cucurbita maxima])

HSP 1 Score: 222.2 bits (565), Expect = 3.8e-54
Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ
Sbjct: 501 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 560

Query: 142 IVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 195
           IVSPALSALA+SS TGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR
Sbjct: 561 IVSPALSALATSSATGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 613

[Close]

BLAST of CmoCh10G001020 vs. TAIR 10
Match: AT5G63120.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-32
Identity = 72/112 (64.29%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDIKCV+NYDFP++LEDY+HRIGRTGRAGAKG AFTFFTH+NAK AREL+KIL+EAGQ
Sbjct: 475 DVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQ 534

Query: 142 IVSPALSALASSSGTG----GSSSKYRPQ-GHRGFG-GNRTMVSGPNAIPIG 188
           +V P LSAL  SSG+G    G    +RP+ G RG G G++   S  N +P G
Sbjct: 535 VVPPTLSALVRSSGSGYGGSGGGRNFRPRGGGRGGGFGDKRSRSTSNFVPHG 586

[Close]

BLAST of CmoCh10G001020 vs. TAIR 10
Match: AT1G55150.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 108.2 bits (269), Expect = 7.4e-24
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKD+K VINYDFP SLEDYVHRIGRTGRAGAKGTA+TFFT  NA+ A+EL  IL+EAGQ
Sbjct: 409 DVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQ 468

Query: 142 IVSPALSALASSS-----GTGGSSSKYRPQGHR 170
            VSP L+++  S+     G GG    +R +G R
Sbjct: 469 KVSPELASMGRSTAPPPPGLGG----FRDRGSR 497

[Close]

BLAST of CmoCh10G001020 vs. TAIR 10
Match: AT3G01540.2 (DEAD box RNA helicase 1 )

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-21
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDI+ V+NYDFP+ +EDYVHRIGRTGRAGA G AFTFF  +++KHA +LIKIL  A Q
Sbjct: 467 DVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQ 526

Query: 142 IVSPALSALASSSGTGGSSSKYR---PQGHRGFGGN 175
            V P +  +A+  G GG +   R   P G RG GG+
Sbjct: 527 RVPPQIREMATRGG-GGMNKFSRWGPPSGGRGRGGD 561

[Close]

BLAST of CmoCh10G001020 vs. TAIR 10
Match: AT3G01540.1 (DEAD box RNA helicase 1 )

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-21
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDI+ V+NYDFP+ +EDYVHRIGRTGRAGA G AFTFF  +++KHA +LIKIL  A Q
Sbjct: 467 DVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQ 526

Query: 142 IVSPALSALASSSGTGGSSSKYR---PQGHRGFGGN 175
            V P +  +A+  G GG +   R   P G RG GG+
Sbjct: 527 RVPPQIREMATRGG-GGMNKFSRWGPPSGGRGRGGD 561

[Close]

BLAST of CmoCh10G001020 vs. TAIR 10
Match: AT3G01540.3 (DEAD box RNA helicase 1 )

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-21
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 82  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQ 141
           +VKDI+ V+NYDFP+ +EDYVHRIGRTGRAGA G AFTFF  +++KHA +LIKIL  A Q
Sbjct: 467 DVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQ 526

Query: 142 IVSPALSALASSSGTGGSSSKYR---PQGHRGFGGN 175
            V P +  +A+  G GG +   R   P G RG GG+
Sbjct: 527 RVPPQIREMATRGG-GGMNKFSRWGPPSGGRGRGGD 561

The following BLAST results are available for this feature:

BLAST of CmoCh10G001020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W4R3	3.6e-31	64.29	DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana OX=3702 GN=RH30 P...	[more]
Q5N7W4	6.7e-30	63.64	DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
G0SFM2	6.5e-25	56.64	ATP-dependent RNA helicase DBP2 OS=Chaetomium thermophilum (strain DSM 1495 / CB...	[more]
Q2H720	2.5e-24	51.79	ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum (strain ATCC 6205 / CBS 1...	[more]
Q5QMN3	9.4e-24	63.16	DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of CmoCh10G001020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HMK2	1.7e-55	99.12	DEAD-box ATP-dependent RNA helicase 20-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JDK6	1.8e-54	97.35	DEAD-box ATP-dependent RNA helicase 20-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A0A0LP25	5.3e-46	88.39	Helicase C-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A5A7URR2	9.1e-46	87.50	DEAD-box ATP-dependent RNA helicase 20 isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A5D3BJX7	9.1e-46	87.50	DEAD-box ATP-dependent RNA helicase 20 isoform X1 OS=Cucumis melo var. makuwa OX...	[more]

BLAST of CmoCh10G001020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965035.1	3.4e-55	99.12	DEAD-box ATP-dependent RNA helicase 20-like [Cucurbita moschata]	[more]
KAG6589422.1	1.7e-54	98.23	DEAD-box ATP-dependent RNA helicase 30, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023516950.1	1.7e-54	98.23	DEAD-box ATP-dependent RNA helicase 20-like [Cucurbita pepo subsp. pepo]	[more]
KAG7023100.1	1.7e-54	98.23	DEAD-box ATP-dependent RNA helicase 30, partial [Cucurbita argyrosperma subsp. a...	[more]
XP_022987231.1	3.8e-54	97.35	DEAD-box ATP-dependent RNA helicase 20-like [Cucurbita maxima]	[more]

BLAST of CmoCh10G001020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63120.2	2.5e-32	64.29	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G55150.1	7.4e-24	62.37	DEA(D/H)-box RNA helicase family protein	[more]
AT3G01540.2	2.0e-21	56.25	DEAD box RNA helicase 1	[more]
AT3G01540.1	2.0e-21	56.25	DEAD box RNA helicase 1	[more]
AT3G01540.3	2.0e-21	56.25	DEAD box RNA helicase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 80..154 e-value: 1.9E-23 score: 84.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 82..149
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 82..112 e-value: 1.1E-8 score: 35.4
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 82..151 score: 10.220124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..194
None	No IPR available	PANTHER	PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	coord: 82..165
None	No IPR available	PANTHER	PTHR47958:SF73	LD32873P	coord: 82..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G001020.1	CmoCh10G001020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003724	RNA helicase activity