CmoCh10G000550 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G000550
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein indeterminate-domain 16-like
Location	Cmo_Chr10: 258002 .. 258511 (-)
RNA-Seq Expression	CmoCh10G000550
Synteny	CmoCh10G000550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTCCTTCCGACGCCTCACACCATAGCGTCGTCGTCGTCGTCATCGCACATGTCGTCCCGCCCGTCCGCGTCGTCGATGAGGTTCCGGTCGGATCCGTATGAAGCGGGTCCAGGATCGCTGGACCTGCAGCTATCGATAAGCGTGAGGCCAATCCGGCCTACGGCGGAGTGCGTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGAGCTGCGTGGAGGCGCTGAAGTGGCAGGCGGCGGAGCAAATAAGGCTGGCGGCGATGGAAAAGGCGTACGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAGATAGAATTGGCGCAGACGGAATTCGGAAGGGCTCGACAGATGTGGGAGAGGGCGCGAGAAGAAGTGGAGAAGGCGGAGCGTATGAAAGAGAGAGCCACTCGGCAAATGGACTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGGCTTCTTAA

mRNA sequence

ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTCCTTCCGACGCCTCACACCATAGCGTCGTCGTCGTCGTCATCGCACATGTCGTCCCGCCCGTCCGCGTCGTCGATGAGGTTCCGGTCGGATCCGTATGAAGCGGGTCCAGGATCGCTGGACCTGCAGCTATCGATAAGCGTGAGGCCAATCCGGCCTACGGCGGAGTGCGTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGAGCTGCGTGGAGGCGCTGAAGTGGCAGGCGGCGGAGCAAATAAGGCTGGCGGCGATGGAAAAGGCGTACGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAGATAGAATTGGCGCAGACGGAATTCGGAAGGGCTCGACAGATGTGGGAGAGGGCGCGAGAAGAAGTGGAGAAGGCGGAGCGTATGAAAGAGAGAGCCACTCGGCAAATGGACTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGGCTTCTTAA

Coding sequence (CDS)

ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTCCTTCCGACGCCTCACACCATAGCGTCGTCGTCGTCGTCATCGCACATGTCGTCCCGCCCGTCCGCGTCGTCGATGAGGTTCCGGTCGGATCCGTATGAAGCGGGTCCAGGATCGCTGGACCTGCAGCTATCGATAAGCGTGAGGCCAATCCGGCCTACGGCGGAGTGCGTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGAGCTGCGTGGAGGCGCTGAAGTGGCAGGCGGCGGAGCAAATAAGGCTGGCGGCGATGGAAAAGGCGTACGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAGATAGAATTGGCGCAGACGGAATTCGGAAGGGCTCGACAGATGTGGGAGAGGGCGCGAGAAGAAGTGGAGAAGGCGGAGCGTATGAAAGAGAGAGCCACTCGGCAAATGGACTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGGCTTCTTAA

Protein sequence

MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS

Homology

[Close]

BLAST of CmoCh10G000550 vs. ExPASy Swiss-Prot
Match: F4IPE3 (Zinc finger protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.5e-09
Identity = 33/80 (41.25%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 90  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATR 149
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EF  A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 335 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 394

Query: 150 QMDSTCMEITCQSCRQRFRA 169
           ++ ST M++TCQ+C+ +F+A
Sbjct: 395 KISSTIMQVTCQTCKGQFQA 414

[Close]

BLAST of CmoCh10G000550 vs. ExPASy Swiss-Prot
Match: Q9C9X7 (Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.1e-07
Identity = 28/64 (43.75%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 105 ERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 164
           E  R  TKR+IE+A+ EF  A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q
Sbjct: 315 EEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRRISATMMQITCHNCKQ 374

Query: 165 RFRA 169
            F+A
Sbjct: 375 HFQA 378

[Close]

BLAST of CmoCh10G000550 vs. ExPASy Swiss-Prot
Match: Q9FRH4 (Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-06
Identity = 47/143 (32.87%), Postives = 73/143 (51.05%), Query Frame = 0


Query: 25  SHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVE 84
           S+  S   A      S P+E    SL+LQLSI +      A    K E  +  E A+   
Sbjct: 214 SNQHSPAFAYPFNASSAPFE----SLELQLSIGMARTSAQARHNEKRETSLTKERAN--- 273

Query: 85  ALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKE 144
                          E   AE  R+  KR+IE+A+ +F +A+++ E A+ E+EKA  ++E
Sbjct: 274 --------------EEARKAEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVVRE 333

Query: 145 RATRQMDSTCMEITCQSCRQRFR 168
            A +++++T MEITC SC+Q F+
Sbjct: 334 EAIKRINATMMEITCHSCKQLFQ 335

[Close]

BLAST of CmoCh10G000550 vs. ExPASy TrEMBL
Match: A0A6J1E4S8 (protein indeterminate-domain 16-like OS=Cucurbita moschata OX=3662 GN=LOC111429927 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRP 60
           MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRP
Sbjct: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRP 60

Query: 61  IRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQT 120
           IRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQT
Sbjct: 61  IRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQT 120

Query: 121 EFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS 170
           EFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS
Sbjct: 121 EFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS 169

[Close]

BLAST of CmoCh10G000550 vs. ExPASy TrEMBL
Match: A0A6J1JFV3 (protein indeterminate-domain 16-like OS=Cucurbita maxima OX=3661 GN=LOC111484749 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.2e-79
Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHTI-ASSSSSSHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVR 60
           MEDEDQKELQLLPTPHTI +SSSSSSHMSSRPSASSMRFRSDPYE GPGSLDLQLSISVR
Sbjct: 1   MEDEDQKELQLLPTPHTIVSSSSSSSHMSSRPSASSMRFRSDPYEPGPGSLDLQLSISVR 60

Query: 61  PIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQ 120
           PIRPTAECVFKYE+VMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQ
Sbjct: 61  PIRPTAECVFKYEKVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQ 120

Query: 121 TEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS 170
           TEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Sbjct: 121 TEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRRS 170

[Close]

BLAST of CmoCh10G000550 vs. ExPASy TrEMBL
Match: A0A5D3BFD1 (Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00530 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.2e-71
Identity = 155/173 (89.60%), Postives = 161/173 (93.06%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGP-GSLDLQLSISVR 60
           MEDEDQKELQLLPTPH+IA  SSSSHMSSRPS SS+RFRSDP+EAG  GS+DLQLSIS+R
Sbjct: 1   MEDEDQKELQLLPTPHSIA--SSSSHMSSRPSDSSLRFRSDPFEAGSGGSVDLQLSISLR 60

Query: 61  PIRPT---AECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE 120
           PIRP     EC+FKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE
Sbjct: 61  PIRPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE 120

Query: 121 LAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS 170
           LAQTEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Sbjct: 121 LAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of CmoCh10G000550 vs. ExPASy TrEMBL
Match: A0A1S3CN02 (protein indeterminate-domain 16 OS=Cucumis melo OX=3656 GN=LOC103502321 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.2e-71
Identity = 155/173 (89.60%), Postives = 161/173 (93.06%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGP-GSLDLQLSISVR 60
           MEDEDQKELQLLPTPH+IA  SSSSHMSSRPS SS+RFRSDP+EAG  GS+DLQLSIS+R
Sbjct: 1   MEDEDQKELQLLPTPHSIA--SSSSHMSSRPSDSSLRFRSDPFEAGSGGSVDLQLSISLR 60

Query: 61  PIRPT---AECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE 120
           PIRP     EC+FKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE
Sbjct: 61  PIRPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE 120

Query: 121 LAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS 170
           LAQTEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Sbjct: 121 LAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of CmoCh10G000550 vs. ExPASy TrEMBL
Match: A0A5A7UWD1 (Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00540 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 154/173 (89.02%), Postives = 161/173 (93.06%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGP-GSLDLQLSISVR 60
           MEDEDQKELQLLPTPH+IA  SSSSHMSSRPS SS+RFRSDP+EAG  GS+DLQLSIS+R
Sbjct: 1   MEDEDQKELQLLPTPHSIA--SSSSHMSSRPSDSSLRFRSDPFEAGSGGSVDLQLSISLR 60

Query: 61  PIRPT---AECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE 120
           PIRP     EC+FKYEEVMKPEAASCVEALKWQAAEQIRLAA+EKAYAERVRELTKREIE
Sbjct: 61  PIRPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAIEKAYAERVRELTKREIE 120

Query: 121 LAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS 170
           LAQTEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Sbjct: 121 LAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of CmoCh10G000550 vs. NCBI nr
Match: XP_022921773.1 (protein indeterminate-domain 16-like [Cucurbita moschata])

HSP 1 Score: 315.5 bits (807), Expect = 2.9e-82
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRP 60
           MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRP
Sbjct: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRP 60

Query: 61  IRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQT 120
           IRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQT
Sbjct: 61  IRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQT 120

Query: 121 EFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS 170
           EFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS
Sbjct: 121 EFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS 169

[Close]

BLAST of CmoCh10G000550 vs. NCBI nr
Match: XP_023516632.1 (protein indeterminate-domain 16-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.8 bits (795), Expect = 7.0e-81
Identity = 166/167 (99.40%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRP 60
           MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRP
Sbjct: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRP 60

Query: 61  IRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQT 120
           IRPTAECVFKYEEVMKPEAA CVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQT
Sbjct: 61  IRPTAECVFKYEEVMKPEAAGCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQT 120

Query: 121 EFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR 168
           EFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
Sbjct: 121 EFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR 167

[Close]

BLAST of CmoCh10G000550 vs. NCBI nr
Match: XP_022987095.1 (protein indeterminate-domain 16-like [Cucurbita maxima])

HSP 1 Score: 304.3 bits (778), Expect = 6.6e-79
Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHTI-ASSSSSSHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVR 60
           MEDEDQKELQLLPTPHTI +SSSSSSHMSSRPSASSMRFRSDPYE GPGSLDLQLSISVR
Sbjct: 1   MEDEDQKELQLLPTPHTIVSSSSSSSHMSSRPSASSMRFRSDPYEPGPGSLDLQLSISVR 60

Query: 61  PIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQ 120
           PIRPTAECVFKYE+VMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQ
Sbjct: 61  PIRPTAECVFKYEKVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQ 120

Query: 121 TEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS 170
           TEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Sbjct: 121 TEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRRS 170

[Close]

BLAST of CmoCh10G000550 vs. NCBI nr
Match: KAG6589384.1 (Zinc finger protein SHOOT GRAVITROPISM 5, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023062.1 Protein SHOOT GRAVITROPISM 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 295.8 bits (756), Expect = 2.3e-76
Identity = 161/169 (95.27%), Postives = 161/169 (95.27%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRP 60
           MEDEDQKELQLLPTPHTIAS       SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRP
Sbjct: 1   MEDEDQKELQLLPTPHTIAS-------SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRP 60

Query: 61  IRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQT 120
           IRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQT
Sbjct: 61  IRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQT 120

Query: 121 EFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS 170
           EFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Sbjct: 121 EFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 162

[Close]

BLAST of CmoCh10G000550 vs. NCBI nr
Match: XP_038878928.1 (protein indeterminate-domain 16 [Benincasa hispida])

HSP 1 Score: 284.3 bits (726), Expect = 7.0e-73
Identity = 156/170 (91.76%), Postives = 162/170 (95.29%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYE-AGPGSLDLQLSISVR 60
           MEDEDQKELQLLPTPH+IA  SSSSHMSSRPS SS+RFRSD +E AGPGS+DLQLSIS+R
Sbjct: 1   MEDEDQKELQLLPTPHSIA--SSSSHMSSRPSDSSLRFRSDAFEAAGPGSVDLQLSISLR 60

Query: 61  PIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQ 120
           PIRP AEC+FKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQ
Sbjct: 61  PIRPAAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQ 120

Query: 121 TEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS 170
           TEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Sbjct: 121 TEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 168

[Close]

BLAST of CmoCh10G000550 vs. TAIR 10
Match: AT3G48550.1 (BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 134.4 bits (337), Expect = 8.4e-32
Identity = 87/169 (51.48%), Postives = 113/169 (66.86%), Query Frame = 0


Query: 2   EDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGP---GSLDLQLSISV 61
           + +  KELQLLP+P     S+ S     RP+  +    ++ + +       LDL+LSIS+
Sbjct: 4   QQDHHKELQLLPSP----PSTESPVRKHRPTVITTDHHNNHHRSSSMIHHDLDLKLSISL 63

Query: 62  RPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA 121
             I    E          P     VEALKWQAAEQIRLAA+EKAYAERVRELT+RE+E+A
Sbjct: 64  SSISTAEEL---------PNGG--VEALKWQAAEQIRLAAIEKAYAERVRELTRREMEMA 123

Query: 122 QTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR 168
           Q+EF RAR MW++AREEVE+AER+KER+  ++D+ C+EITC SCRQRFR
Sbjct: 124 QSEFARARVMWQKAREEVERAERLKERSMTKIDTACLEITCHSCRQRFR 157

[Close]

BLAST of CmoCh10G000550 vs. TAIR 10
Match: AT2G01940.1 (C2H2-like zinc finger protein )

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-10
Identity = 33/80 (41.25%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 90  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATR 149
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EF  A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 335 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 394

Query: 150 QMDSTCMEITCQSCRQRFRA 169
           ++ ST M++TCQ+C+ +F+A
Sbjct: 395 KISSTIMQVTCQTCKGQFQA 414

[Close]

BLAST of CmoCh10G000550 vs. TAIR 10
Match: AT2G01940.2 (C2H2-like zinc finger protein )

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-10
Identity = 33/80 (41.25%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 90  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATR 149
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EF  A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 246 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 305

Query: 150 QMDSTCMEITCQSCRQRFRA 169
           ++ ST M++TCQ+C+ +F+A
Sbjct: 306 KISSTIMQVTCQTCKGQFQA 325

[Close]

BLAST of CmoCh10G000550 vs. TAIR 10
Match: AT2G01940.3 (C2H2-like zinc finger protein )

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-10
Identity = 33/80 (41.25%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 90  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATR 149
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EF  A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 336 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 395

Query: 150 QMDSTCMEITCQSCRQRFRA 169
           ++ ST M++TCQ+C+ +F+A
Sbjct: 396 KISSTIMQVTCQTCKGQFQA 415

[Close]

BLAST of CmoCh10G000550 vs. TAIR 10
Match: AT1G68130.1 (indeterminate(ID)-domain 14 )

HSP 1 Score: 55.1 bits (131), Expect = 6.5e-08
Identity = 28/64 (43.75%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 105 ERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 164
           E  R  TKR+IE+A+ EF  A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q
Sbjct: 315 EEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRRISATMMQITCHNCKQ 374

Query: 165 RFRA 169
            F+A
Sbjct: 375 HFQA 378

The following BLAST results are available for this feature:

BLAST of CmoCh10G000550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IPE3	7.5e-09	41.25	Zinc finger protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5...	[more]
Q9C9X7	9.1e-07	43.75	Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV...	[more]
Q9FRH4	2.0e-06	32.87	Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV...	[more]

BLAST of CmoCh10G000550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E4S8	1.4e-82	100.00	protein indeterminate-domain 16-like OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A6J1JFV3	3.2e-79	97.06	protein indeterminate-domain 16-like OS=Cucurbita maxima OX=3661 GN=LOC111484749...	[more]
A0A5D3BFD1	4.2e-71	89.60	Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CN02	4.2e-71	89.60	protein indeterminate-domain 16 OS=Cucumis melo OX=3656 GN=LOC103502321 PE=4 SV=...	[more]
A0A5A7UWD1	1.2e-70	89.02	Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of CmoCh10G000550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921773.1	2.9e-82	100.00	protein indeterminate-domain 16-like [Cucurbita moschata]	[more]
XP_023516632.1	7.0e-81	99.40	protein indeterminate-domain 16-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022987095.1	6.6e-79	97.06	protein indeterminate-domain 16-like [Cucurbita maxima]	[more]
KAG6589384.1	2.3e-76	95.27	Zinc finger protein SHOOT GRAVITROPISM 5, partial [Cucurbita argyrosperma subsp....	[more]
XP_038878928.1	7.0e-73	91.76	protein indeterminate-domain 16 [Benincasa hispida]	[more]

BLAST of CmoCh10G000550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48550.1	8.4e-32	51.48	BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:...	[more]
AT2G01940.1	5.3e-10	41.25	C2H2-like zinc finger protein	[more]
AT2G01940.2	5.3e-10	41.25	C2H2-like zinc finger protein	[more]
AT2G01940.3	5.3e-10	41.25	C2H2-like zinc finger protein	[more]
AT1G68130.1	6.5e-08	43.75	indeterminate(ID)-domain 14	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 129..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	PANTHER	PTHR34946:SF2	OS03G0310200 PROTEIN	coord: 1..167
IPR039288	Zinc finger protein SHOOT GRAVITROPISM 5-like	PANTHER	PTHR34946	OS03G0310200 PROTEIN	coord: 1..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G000550.1	CmoCh10G000550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009630	gravitropism
cellular_component	GO:0005634	nucleus