CmoCh09G012430 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G012430
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionpolypyrimidine tract-binding protein homolog 3
LocationCmo_Chr09: 10677006 .. 10688107 (+)
RNA-Seq ExpressionCmoCh09G012430
SyntenyCmoCh09G012430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTGTTTGTTCTTGTTCATCTACTCGTTTAATTTTTGCTGGAATTGCTGTTTCGAGGAAGTAGTCTAGGGTTTTTTTGACCTTTGGTGCTCCTGTTTTTGCTTGTTTTGTATGAACATTGACTGTTTATTGATTGAATTATGAACTCTTTGTGGTACTCTGATTTGAGTTTTCTCTAATTTTGGGATTTTGGGTTTCTGGTTTGTGATTGGTCAAATTTCTTTTGTTTTTGGGTTTCAAGCCTGCATTGCGGCAGGACAATCACTGTTAATTGTTTATTTAAATTAATCTCTGGAAAACTGGGATTGCCAACCCTTATTGAAGCTTAATTTCTTTGCTTTCATTTAGAATGGTTGAGTTGGTCTTGTAAGCCTCTGGAAATGTTAATTTGGGTGTTTTTTTTTTTTTTTTTTTTTTTGCTGCAAGCAGTTGAGGATGACTGAACCCTCAAAGGTTATTCACGTCCGGAATGTTGGCCATGAAATATCGGAGGTTCATATCTCTCTCTCTCTATCCCTCTCAAGTTCAATTGATAGCTTTGTAATTTAAAATAATCTCTGCAAATGTATATTGGTAGATGAGCTGTTGCCATGCTGCATGCTAGTCCATGCTTCACTTGCTAAGCTACCTTGTAAATATGATTGCTTTTGATATAATTTTACATCCATTCTCTCCAATTATTACTACAGAAACTATTGCAATTTAATGGGTACTAGAGTTTAGGGGCACTGTAGATTGTGTTAGAAGTTTTTAAGTTGTAAGTGGAATTTCATTTATGTTATGATGCAACCAAGCATCAAAGGAGAGAAATCTTCAAGAGCTTTCAATCCGAATCGTTACTAATGTTTGAAAGTGTAGTAATGCAAGAGATTGGCCCTTAGAGGATTCAACCCTGCTAATCGAACTAAACTTACATAATCAGCAAGTTCAAAGAAAATTACCAAACTCCCATAACATTGTTTGAAAAAGACCGATTTCTATCCTGTTTTTTTAGTTTTTTTCTAACTTCTAAGGAAGAAACACATGAATATCGTTTAAGATATTCATTTTTTTTTCTCTATTTATATATAAAAAATGTATTGTAAGCCTTATAAAAAAGAGCCTGCTCCTTTCTTTTGGTGCCTAGCGCTTAAACCCCGGAGGGCTATTGCACTTTAGTGTACCACGCCTCGAGCTTTAAATACACTGTTCCTAATTACACACAAACTATGCTACATCAATTCCTGTCCTCTAGCTCACAACATTGTGAAGTTGTGAATGTTGTTCTGAAGGCACTTATTTTGTTGATTTGAAAATCTCCATCCAGCTTCTCTAGTTTCTCTATTTTCCTTCAATCCTCACGAAAATTGGGCTCTGATACCAAAATTGATACAACTAAGAAGCCAAGGAAAGAAATCATCAAGAACTCTCCACCAAAACATTCCTAATGTTGAATAATTATATTAGTGTGAGATATCTCTATTTCTAGAGCATTTAAGCCTGCTAAACCATCTAGAACTAACTATCACAATTAATAAATTCAAACAAAATTACCAAACAACTCCTAGTTATACATTAATTATACATCCTTTTTTATTTGTTAAATAACCAAATTGTTATTGAAAAAAAAGAAAAAAAAAATACAAGGACATAGAAGAAAAAGAGCCCACAAAAGAAAGAGGCAACATAAAGAAGGAACCTGCACAAAAGAAAGAGGCAACTTAAAGAAAGGGCCTCCAACTAGGCCATATAAGACCTAACGGCTAGTTGCCAAACGACTTAGCCATCGAAGCTCACAAAGTCATGTTGTACATAATAAGAGCCCAAACGTTTCTCCAAGACCTCTCAAGTCCTTTAAGGACTCTATTATTCCTCTTCCCCAAAGATTCCATCTAATGATGAACATTAGTTTGTCACAAAAATCTTCCTTTTCCCTTCTCACAAGGAGCGCGAAGAAGAAACTCCTTGATCATCACTCTGCAACTCTTATGTCTATTTAGGTTCAAGCCAAATTCCTTGAAGAAGCAACTCCAAATAACATGGGCTAAATCACAACTCCAAAGAGTATAATTAATGTCCTCAGCCATTCATCTACAAAGAATACAACACAACAACCCTTTCAATTTGCACAACTCTCGAAATGCTATCCTAGGTGTTGACCGTTCTGTGGAAAACCTCTCACACAAAAAATCAACCTTTTTTTTTTTTTTTGAAAATTTCACCTAGACACCACTTGAGAATGAACCTTTTTTTTTGAAATTTTCACCTAGACAATACTTGAGGGAAAAAGATTGATTAGGTGGTGATAGAAATATTTGCTAGAGAAGTCATATGAAGGACAAAACTCCAAATTTAAGCATCCTTTCTCTTCGGACTACAACAAAATTCCCCTATCAATGAGAGGAGGGAAACAAGAATTAGGCAACACATATGCCACCAAGTAGTTCCTTATCGAGGATAAATGATAACGAGGTAATGTGCGTAGAAGGGTCGATCCCCCGACCACCTCATTTGTACTACTTTAGCCCGAGTTCCCCAATGCATACTTGGTGCATTTATCTTCAATGAGTCTGTAAATCTTGGGAAGCCAGTGGGAAACTTTTGTCTGCATTTATGAAATAAATGCAATAGCACTGTTGCAATCTCAGGATGATTATATTTTCATTCTTGCAAAACAAATATTCCCACAAATATTTTCTTATCTTTAATTTTGGTTCACCAAAGGGGGTATTTCAAACTCTATTGAAGGGTGGTTCTATAGTGTGATATCTTCACTTCAACTTTTATTTGTGTTATTGACGACTTAATGTGTGTATCTTTTGAACGTCCCATATTTCCTGATTTTTCTCTGAATCCGTACTCTTTTACATCCATGCAGAACGATTTGCTTCAGCTATTCCAGCCATTTGGTGTCATAACCAAGCTTGTGATGCTTCGTGCTAAAAATCAGGTTTGACTTCACTTTGATACAGTGGCATGTTTGAGGTTGTTCTATATGTGAGCTAATGTGGAATAATCATTGTTTTGTCATGTCATGAATTCAGGCTCTTATCCAGATGCAAGATGTTCCCTCAGCAGTTAATGCTTTGCAGTTCTTTGCAAATGTTCAACCTAGCATTAGGTATTTATGTCGTTAAAATTTATCCCTGTGAATTTAATTGGCCCTTTTTTATTGTTAGCATTACCATAGTTTGCAATGGTATATAGCATGAAGAGTGGAGAGTGCAACTGTTAAATAGTTAGGATGACAAAATATGTGGGTCCTATTATAATTTTGTAACTGACAGTGCTCAAGTAAGTGTGCGATCTTAGCTAGTGTTTAGGAAGGACTATGGTAGAGAAGGGAGTTGCTTAGATCTCACCTCAGAGGAAAGTCTAGGATCCCTTGAATCTCTTCACTCACCGCTTGACTCTGTATCTTGCTCGCTCTAGTAAGCAACAAAAGTTCTCTATTGTGTTACCCTACCAGAGTTATATTGTTCTAGGTAGTGGTTTAATTAACAAGATGGTAGCGAGATTTGATGTTTCAGAAGTTGAAGTCTTGGTTCCAAGTTTTGATGCTGTCATTTGATCTGTTCCTGAAGTTGCAAGGATTTTGTTTATTATTTATTTGTAATTTTATTCTTATTTTTTTTGGAGAAGTTGCAATGACTAAAGTTAGACTGTTGTTGTCTGGAAAGTTCATGGTAGTTTTTTCTCCTTCAGTTAGTGTTTTCTCAAGTTTATTGGGTTCAGAGTTGTGTAATTTCATCAATTTTGGGTCGTGTTAATATGTTGGTACTCTTGTTATAAATTTTCATTTCATCAATGAAAATCTCTATTTTCTTAAAAAAGGATGAAAACAAGATTAGATACCAATTCGGTACAACTGGAGGGCTTGGATGTGAAATTATATTAGGTCTGTTAATTTTGTTTATATTTGTCAATGGGAAGTTAAGGAGTACGATCTTTTCCATGAGGGGACTCGAACAACGAGGTCCTTTGTTGATTTTTTTCCCCCTCCTTTTAGTGGTCGATGTCCTAGTGGAATTGAAAGGTTTAAGATGTTCAGGGAGTTAGTTCATCCTTCTTTAGTTTGCCGACAACATTATTTTTTTGTTTAGGTCAGGAAAAGGCCTTAGTTAATCTTAATAGGTTTTTGTCTTTCTTTGAAGTGATGTCTAGCCTTGAACTTAATCGAGGAAAGAATTCTATTATTGGCTTAAACGGTTGCCCCTCCAAGGTAAGGTTCTATCTAGGCTTCTTTACTGGGTTGTGAGGTGGGTCAATTCCCTTCTTTTTAATTGGGGTTGCCTTAGGTAGTAACCTAAAGTGTGAGGCTTTTCGGGATCTTGTGGTGGAAAAGGTTTAAAAGCGATTATCTGCTTAGACGAAGGTATTCTTCTCTAAAGGGAGAATGCTTACCCTTATTCCATTGGTGCCAAACGAGTTTCCAAGTTATTTCATGTCTCTCTTCAAAATTTTAGTTGGGGTTAGTGAGAAAATTGAGAGAGGTATGAGAAACGTTTTGTTGAAGGGGACGAATGAAGGGGGAGGGTCCACTTGGTTAAGTGGAGGTGGTGTTGAAGCTTATGGAGTCGGGAGGTCTAGGCATTAGGAGTCTTGAACTTCGAAACAAGACCTTTTTGGCTAAGTGGTTGTGGCGCTTCTTCATGGAGCTTAACATTCTGTGGTATACAACGATTGTGAGTAGATATGACCCTCATCCTTTTTAGTATGGTGAAAGTATCCCTTGCTCTATTGGAAAAGGCTCGAAGGTTTACTCTTGGGAGGGCCACTGGGTGTGGGATGAGCCTTCTTGCGCTTTGTTTCCAAGATTGTATCACCTCTTAAATAAGAGGTTGCATTCTCTCGCCTCTATGTTGCCTTCCCTAGACCCTTTTTCTTCCATCTCTTTAGAGTTTTAGCACCCTTTTTTTGTAGAGGCGCTGGACGTGGCAAGCTTGTCTTTCCTAGAGAACGGATCTTAGATTCTGGTCCCACCATCCTTCTAAGGTTTCTCTTTGCCTTTCCTTTTCCACTTGTTGTCCTCCCTTTCTCCTTCCCTTATTGCCCCCGGTATATTCTCTTTCTAGTCTTTCTAGAAGGTTAAGGTGTTTATATGGCTGGTTTTACATGGGAGAGATACGAATCGCATGCGAAGACACTCTTCCTATGTTTTGTTCCCGCAATGTTGCACTCTCTATGGGAGGCATGAGGAGGATCTGAATCTGGTTCATTTATTCTGGGAGTGCTAGTTTGCTCACCACCTTTGGAGTGCTTGTTGAGAGCTTTTGGGGGTTGTTGGGTTTGGAATTGAGATGGTATAGTCCATTGAGGAAGTGATTTTGTGTTCTCCCTTCTGGGAAGAGGGTCGAGTTGTGTGGAAAACTCACTTTGCTTTTTTATAGTGTATTTGGATCGAGTGGAATTATATGAATTTCAGGGAGGTGAGAGATCGAGTGACAAAGTTTGGGAAGTGGCCAGAATGAATGGTTCTTTGAGGGCATCAATCACTAATTGTTTTGTCATTATGAGTTTGTTCTTTTTCTTTTGGTCTTCTGTCATTTTCTATACATAGGGTCAAACTCTCTTTTTTTGTGTTGGGGGCTCAGTGGCTTTTGTATGCCTTGTATATTCTTTCATTTTTCTGAATGAAACTGTGAAATGTGTTGAATTAGTTGTTTAAAGAAGGAAGAAGTGTATGATACCTAGTCATTTGTGGAGAGAAAATATTTTTCTTCTTCCAGAGATGATCCAAATATAATATAAGAGAAATCCCAACTAAGGATACAAAGTATAAAAGGAAAGGATCCAAATATAACACGAGATGATGACTAATATTTTAATCTAATTGGAAATATTTTATACAACTACCAATTTCTTGTTGCTAAATGATATGTGGGATTGAGGGTTTAGGGAGACGCTTGAAGCAACCAGTTCACATCTGATATGATTCTGTGTTCAACCTGCCGAAGTGTTGGGGCTGTGAACTGCCATTGGGAACTTGAGAACCCTCAAAATTTTGATTTGTCGGGAAGATGTTTCATCTACGACACAACTTGGGAGAATGCTTCAACTAAGATGCAATTTGGTAGCATGTGTCCTAACTTTCAGCTTCCTACGAGGTGGCTCTTTAGGGGCAGGGTAATTACACTCTCTGATTGTGGAAGTATACAGTGAACAGGGAGAGGGTGCATGGTGCGTGTGCATCTGTGAAGTAGTTAGGATACTGACGTATGTAGGGCTTATTCTAAGAGTACTGGAATAAGAGATATTCTCAGCTAATATTTAGGGGGACTGTGGGATAGAGGGGGTGCTCTTTCGGTAAGTGCTTAGATCACGAGTCAATAGAATTAGGAATCTCTTCAAGCATCGTCCCATTGCAATGTCTATTTTTCTTACTCTTGTAGATAAAGTGAGTACTATCATTTTTTCCCTCCAAATTTAATTTTAAATGAGGCATCTGATGTTTCAACTCTTTTCTGTCCTTTCTTCAGGGGGAGGAATGTTTATGTCCAGTTTTCATCACATCAAGAACTTACTACTGCTGATCAGAATGCTCAAGGACGAGGAGATGAGGTTTGTAACTATTTACCTGACTTTTAAAAGGAAAATGCTTAGTTATCATAATGGAAACTCGGAAATGACTTGAGGCAGGAATGGACCTCGATAAATATGCAATGTAATGAGTTAACGCATAGTTTTTGTGTTGAACAGTCAGTACTCGTGATACCACTTTAAGTTTTTCACATTTGTGAAAGCTCGATAGATTTTTATTTTTCAGCCTTTTATCATGCTGGAATCTCTCTTCCTTCTAACAGAATGGTATACTATACATATTTTAGGACAACTATTTTTGCCGTCTTTCCCTCCATTTTTTTATCTGAAATGTATGATATTTTAATGAAATATTCCTCGTAAGTTGGTATATTCTTTAATTGTATGGTTATTCTGATAATTTATGTGCATTTCTTGGAACAAATGTCAAAATTTTTGTTGAAGACTTTGTCTGACCGTAAGCATCCTTTCCATTTTATATTTTTGAATTCTGAATATTGATTGTTCTCTATAGTAATGATGTAATTTAAATGGAACCTAATCAGATATGGTGATACTAATTTCATACACATGCACTATTGTTTTTTCCTCCCCATGTGAAATACTTGTTGACAGCTTGAGACTTGTCGGGCTCGTTAATGAGCCCCCGTGTGAAACTAGTGGAATAAAGGAAAGAGTTGATTAAGTTCACTTTAATTAAATAGCAAAAGCTTTTGGTATTAGTGATAATGTATCTACTATACTTCTAATCAGTAACCATTACCCGACGCCTAGCTGTGTGTCTTTGTCAGATTGCTGGTACTCTATAATTTAAGAAAAAACATGCATAATATTTTTGGATCTCTTTTTCTTCTCAATTTATTTCCTTCTCTCGTCCTTCTCCATGTGAATACTCTTGGTCACTCTCTGGAGCAGCCAAATCGAATACTCTTAGTCACAATCCATCACATGCTATATCCCATTACAGTGGAAGTGCTGCATCAAGTGTTTTTCCCACATGGATTTGTGGAGAAGATCGTGACATTTCAGAAGTCAGCTGGTTAGATTAAGTTCTCTCTTCTTCCCCCTTTCTCATATCATCACTTTTATGCATGGATATGTTGAAATTCTGTTCTATTGGAGTTGTTTGTCTTTCTTTTTTCCCTTCTCGAGTTGGTCGTTTATTTTTTTAATTTTTTTAACTCATTTTGCACCTGCAAGCATTGGGTCCTCAAATCAAAATTAAGCCTTTCATATAAAACTTGTTGCTAAATACGTTGTTGCTTTTTACTTGAAGCGTTTTTTTATTTTTATTTTTTAGTGAGTCTTTAGACTTGTGCATGAATATCTTTATTGCATTTATGTAGGTTTTCAGGCTCTCATTCAGTATCAAACTCGCCAATGTGCTATTTCCGCTAGGACTGCACTACAGGTAAGCCTCTACTTTCTGTTCGACCAGTCACTTCGAACTTGATCCTGGTTTATTCACTTGAAAGATGGACACTTTTGCTACTCTTTGTAGGGGCGCAATATATATGATGGTTGCTGTCAGCTTGACATTCAGTTCTCCAAGTGGGTTCTATACCAACCATGATATGCTTCTGATTTTTTCCATCTTTACTTGATAATTATAGATTATGGGTTTCATTGTGCAGTCTTGACGAGTTACAGGTGAACTACAACAATGAACGTTCAAGGTTTGTAGCAAAATTAACCCTCAATAAGTTCTCTCCCTTTTGCATCTTGGATTATATTTGTATGAATATTTCTTCTTGATATCGGTCCAGGGATTTCACAAATCCTAGCCTGCCTTCTGAACCAAAAGGCCGGTCATCTCAAGTATGTACCACTGTACATTAAATTCTTATTATCTTTGCCCTTCTCGTTTGGGAAACCTTAATTTTCTTATCTGGATGTGCAGCAGCCTGGATATGGTGATGCGGGAGGCATGTATGCACTTCAAGCATCTGGAGCAGGACCAGGTGCTGGAGTTTTCTATCATAATTGATATATAATATCAGATCATGTATTTATGCTTTTTTTTCTTTCAGGAAAACCATATACTTACATTTTCTTTCTTCTTTTTCTTTGGTTTCAGTTGGTTTTCCACAGGTGTGCATTGTTCCTGTCAAACTATGGTTGAGATGATAGAAGAATATAAGCTACTATTAGATCATTCATTGAGTATCAGGAATTATTCCTTTTGGAATAATATATTAATCATACACTATATTGATTGGACTTTCCACAAGATCCTTTGATGAATATGGTTGATCACATCAGGGAATTCTTAAATTAATTTAAGATCTAGAAATTTGTCTACAGAATTGGGTGTTATTGTTGATGTTCATAATGTGTCTTTTTTACTTGACTTTTAGATGGCCAATGCGGCTGCTGTTGCTGCTGCATTTGGAGGAGGTTTGCCACCTGGTGTTAGCGGGACTAACGACAGGTGTACAGTCCTCGTGTCCAATCTGAATCCTGATGTGAGTAATAATTTTTTATTCTTTGTTAAACTCTTTCTCAAGTTTATATTTTCATGTTTGACGCCACCGTTAATTTCTTTTACAGAGAATAGATGAAGACAAGCTTTTTAACCTTTTCTCCATATACGGTAACATTGCAAGAATTAAGCTTCTCCGGAATAAACCTGATCATGCACTCGTTCAGATGGGAGATGGGTTCCAGGCAGAATTAGCTGTGCACTTTTTGAAGGTTCGGTGTTATTACACTTCTCTCATGCATTGGGGTTTATTTTCTAAAGATTTATTTTTTATCTTTTATAACGGAGTTGTGACAATGTTTAACTCGTTATATACACGAGGCCTTTAGCTTAAGTTGCAAGCCAAAAGCAGAAATATTGAGGAAGAAGTTACATAATAGGAATTTGAACATGTGATCACCTATTTTGGTATCTCCTATATGAGATCCCACATCGGTTAAAGAGGAGAACGAAACATTCTTTGTAAGTGTCTAGAAATCTCTCCCTAGTAGAAGCTTTTTAAAAACCTCGAGGGGAAGCACGGAAGAGAGCCCAAAAAAGACAATATCTGCTAGCAGTGGGCTTGAGCCTTTACAAATGGTATTAGAGTCAGACACTAGGTGATGTGGTAGCGAGGAGGCTGAGCCCTGAAGGGGGGGAGAACACGAGGCGGTGTGCTAGTAAGGTCGCTGGGCTCTGAAGGGGGTGGATTGTGAGATCCCACATTGGTCAGGGAGGAGAACGAACCTTTCTTTATAAGGGCGTGGAAACCTCTCCCTAGTAGACACGTTTTGAAAACCTTGAGGGGAAGCCCGAAGAGGACAATATCTGCTAGCGGTGGGATTGAGGTGTTATATCCTATCCAAAGAGATTCACCTATTTTGGTATCGAGATAAGTTCCAATGAGACCCAAAAGCCTAAAACATGCCAAATATATTGGTATAGTGGTTTATGCAGTTTTTCTATTGAAGTCTATAGAAGCTTTAGTTTTGTTAAAGGGCTTTTGGTTTCTTTGGTGACAAATGCCTAACAGTATTTCACATTTTTGTATAGGGAGCAATGTTGTTTGGCAAAAGATTGGAGGTCAACTTCTCAAAGCATCCTAACATTACACAAGGGGCTGACACTCATGAATATGCTAACTCAAATCTTAATCGTTTTAACCGAAATGCTGCAAAGAACTACCGCTACTGCTGCTCCCCGACAAAGATGATTCACATTTCATCGTTATCCCAGGAAGTGACTGAAGAAGAAATAGTGAATCTCCTCGAGGAGCACGGGCCGATCATCAACACCAAGCTCTTTGAGATGAACGGGAAGAAACAGGCACTCATCATGTTTGACACTGAAGAGCAGGCCACTGAAGCTCTTGTTTGCAAGCACGCTAGTTCGCTTAGTGGGTCGATCATTCGCATTTCGTTTTCCCAGCTGCAGAGTATATGAGTTAACAACGGCATTAAACGCGTAAGTGATGAATTCTTAATGCTTAATTGGTGTTGAGGATTTTAAAAATGGAGATGATATGGCGCATACTGTCTTATTTCTTGTAACAGTTAACTTTGTCTTTGGACTTTTGGTGGGATTGTACTTCTGCTTTGTTGTTGACTCAATACTTCTTCTCTTCTCTTCTTTCTCTTGTGCTAACCGAAATTATTGTCGAGACGACTTCACGACGGAGTTGAATTTCGTTTTATCTTATCAGTTTTGAAGAACAGGAAGAAAAAGGGGAAGCTAACCTGCCTTTTCTGAGTTGAGGATCTCTTTGTTAGGAGGTATGTATATGATGTGTTGTAATTTCTGGCAAATCAGGCCATTGGCTGTTGTAATTTTAGTTCATAGTACTCTTCATCTCTTCTGCCTAATTTATTGTTGAACACTTTATCTTTCACATAGTTTTATCCATTCCTTTCTCCTTACCTTAGCCTTCACAGATAAAGAAATAGCTGTTAAATGATATCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTACCTCTTTATCCTCTTTCACTATCTCCCACCTTCGTACTCCCTCTCTATCCTACTTTCCCTTTGTAGCTCTCTTTCTTCCTGTATTTGATATGAATATGTTAGGTATAAGTCGTTACACCCATG

mRNA sequence

ATGAACCTGCATTGCGGCAGGACAATCACTTTGAGGATGACTGAACCCTCAAAGGTTATTCACGTCCGGAATGTTGGCCATGAAATATCGGAGAACGATTTGCTTCAGCTATTCCAGCCATTTGGTGTCATAACCAAGCTTGTGATGCTTCGTGCTAAAAATCAGGCTCTTATCCAGATGCAAGATGTTCCCTCAGCAGTTAATGCTTTGCAGTTCTTTGCAAATGTTCAACCTAGCATTAGGGGGAGGAATGTTTATGTCCAGTTTTCATCACATCAAGAACTTACTACTGCTGATCAGAATGCTCAAGGACGAGGAGATGAGCCAAATCGAATACTCTTAGTCACAATCCATCACATGCTATATCCCATTACAGTGGAAGTGCTGCATCAAGTGTTTTTCCCACATGGATTTGTGGAGAAGATCGTGACATTTCAGAAGTCAGCTGGTTTTCAGGCTCTCATTCAGTATCAAACTCGCCAATGTGCTATTTCCGCTAGGACTGCACTACAGGGGCGCAATATATATGATGGTTGCTGTCAGCTTGACATTCAGTTCTCCAATCTTGACGAGTTACAGGTGAACTACAACAATGAACGTTCAAGGGATTTCACAAATCCTAGCCTGCCTTCTGAACCAAAAGGCCGGTCATCTCAACAGCCTGGATATGGTGATGCGGGAGGCATGTATGCACTTCAAGCATCTGGAGCAGGACCAGTTGGTTTTCCACAGATGGCCAATGCGGCTGCTGTTGCTGCTGCATTTGGAGGAGGTTTGCCACCTGGTGTTAGCGGGACTAACGACAGGTGTACAGTCCTCGTGTCCAATCTGAATCCTGATAGAATAGATGAAGACAAGCTTTTTAACCTTTTCTCCATATACGGTAACATTGCAAGAATTAAGCTTCTCCGGAATAAACCTGATCATGCACTCGTTCAGATGGGAGATGGGTTCCAGGCAGAATTAGCTGTGCACTTTTTGAAGGGAGCAATGTTGTTTGGCAAAAGATTGGAGGTCAACTTCTCAAAGCATCCTAACATTACACAAGGGGCTGACACTCATGAATATGCTAACTCAAATCTTAATCGTTTTAACCGAAATGCTGCAAAGAACTACCGCTACTGCTGCTCCCCGACAAAGATGATTCACATTTCATCGTTATCCCAGGAAGTGACTGAAGAAGAAATAGTGAATCTCCTCGAGGAGCACGGGCCGATCATCAACACCAAGCTCTTTGAGATGAACGGGAAGAAACAGGCACTCATCATGTTTGACACTGAAGAGCAGGCCACTGAAGCTCTTGTTTGCAAGCACGCTAGTTCGCTTAGTGGGTCGATCATTCGCATTTCGTTTTCCCAGCTGCAGAGTATATGAGTTAACAACGGCATTAAACGCTTTTGAAGAACAGGAAGAAAAAGGGGAAGCTAACCTGCCTTTTCTGAGTTGAGGATCTCTTTGTTAGGAGGTATGTATATGATGTGTTGTAATTTCTGGCAAATCAGGCCATTGGCTGTTGTAATTTTAGTTCATAGTACTCTTCATCTCTTCTGCCTAATTTATTGTTGAACACTTTATCTTTCACATAGTTTTATCCATTCCTTTCTCCTTACCTTAGCCTTCACAGATAAAGAAATAGCTGTTAAATGATATCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTACCTCTTTATCCTCTTTCACTATCTCCCACCTTCGTACTCCCTCTCTATCCTACTTTCCCTTTGTAGCTCTCTTTCTTCCTGTATTTGATATGAATATGTTAGGTATAAGTCGTTACACCCATG

Coding sequence (CDS)

ATGAACCTGCATTGCGGCAGGACAATCACTTTGAGGATGACTGAACCCTCAAAGGTTATTCACGTCCGGAATGTTGGCCATGAAATATCGGAGAACGATTTGCTTCAGCTATTCCAGCCATTTGGTGTCATAACCAAGCTTGTGATGCTTCGTGCTAAAAATCAGGCTCTTATCCAGATGCAAGATGTTCCCTCAGCAGTTAATGCTTTGCAGTTCTTTGCAAATGTTCAACCTAGCATTAGGGGGAGGAATGTTTATGTCCAGTTTTCATCACATCAAGAACTTACTACTGCTGATCAGAATGCTCAAGGACGAGGAGATGAGCCAAATCGAATACTCTTAGTCACAATCCATCACATGCTATATCCCATTACAGTGGAAGTGCTGCATCAAGTGTTTTTCCCACATGGATTTGTGGAGAAGATCGTGACATTTCAGAAGTCAGCTGGTTTTCAGGCTCTCATTCAGTATCAAACTCGCCAATGTGCTATTTCCGCTAGGACTGCACTACAGGGGCGCAATATATATGATGGTTGCTGTCAGCTTGACATTCAGTTCTCCAATCTTGACGAGTTACAGGTGAACTACAACAATGAACGTTCAAGGGATTTCACAAATCCTAGCCTGCCTTCTGAACCAAAAGGCCGGTCATCTCAACAGCCTGGATATGGTGATGCGGGAGGCATGTATGCACTTCAAGCATCTGGAGCAGGACCAGTTGGTTTTCCACAGATGGCCAATGCGGCTGCTGTTGCTGCTGCATTTGGAGGAGGTTTGCCACCTGGTGTTAGCGGGACTAACGACAGGTGTACAGTCCTCGTGTCCAATCTGAATCCTGATAGAATAGATGAAGACAAGCTTTTTAACCTTTTCTCCATATACGGTAACATTGCAAGAATTAAGCTTCTCCGGAATAAACCTGATCATGCACTCGTTCAGATGGGAGATGGGTTCCAGGCAGAATTAGCTGTGCACTTTTTGAAGGGAGCAATGTTGTTTGGCAAAAGATTGGAGGTCAACTTCTCAAAGCATCCTAACATTACACAAGGGGCTGACACTCATGAATATGCTAACTCAAATCTTAATCGTTTTAACCGAAATGCTGCAAAGAACTACCGCTACTGCTGCTCCCCGACAAAGATGATTCACATTTCATCGTTATCCCAGGAAGTGACTGAAGAAGAAATAGTGAATCTCCTCGAGGAGCACGGGCCGATCATCAACACCAAGCTCTTTGAGATGAACGGGAAGAAACAGGCACTCATCATGTTTGACACTGAAGAGCAGGCCACTGAAGCTCTTGTTTGCAAGCACGCTAGTTCGCTTAGTGGGTCGATCATTCGCATTTCGTTTTCCCAGCTGCAGAGTATATGA

Protein sequence

MNLHCGRTITLRMTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQFFANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVAAAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATEALVCKHASSLSGSIIRISFSQLQSI
Homology
[Close]
BLAST of CmoCh09G012430 vs. ExPASy Swiss-Prot
Match: Q6ICX4 (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g43190 PE=2 SV=1)

HSP 1 Score: 734.2 bits (1894), Expect = 9.1e-211
Identity = 365/445 (82.02%), Postives = 402/445 (90.34%), Query Frame = 0 

Query: 13  MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 72
           M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQAL+QMQDV SAV+ALQF
Sbjct: 1   MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60

Query: 73  FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 132
           F NVQP+IRGRNVYVQFSSHQELTT +QN  GR DEPNRILLVTIHHMLYPITV+VLHQV
Sbjct: 61  FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 120

Query: 133 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL 192
           F P+GFVEK+VTFQKSAGFQALIQYQ +QCA SARTALQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 121 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 180

Query: 193 QVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVA 252
           QVNYNN+RSRD+TNP+LP+E KGRSS  P YGD G            V +PQMAN +A+A
Sbjct: 181 QVNYNNDRSRDYTNPNLPAEQKGRSS-HPCYGDTG------------VAYPQMANTSAIA 240

Query: 253 AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV 312
           AAFGGGLPPG++GTNDRCTVLVSNLN D IDEDKLFNLFS+YGNI RIKLLRNKPDHALV
Sbjct: 241 AAFGGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALV 300

Query: 313 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 372
           QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNIT G D+H+Y NSNLNRFNRNAAKNY
Sbjct: 301 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNY 360

Query: 373 RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE 432
           RYCCSPTKMIH+S+L Q+VTEEE++N ++EHG ++NTK+FEMNGKKQAL+ F+ EE+A E
Sbjct: 361 RYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAE 420

Query: 433 ALVCKHASSLSGSIIRISFSQLQSI 458
           ALVCKHA+SL GSIIRISFSQLQ+I
Sbjct: 421 ALVCKHATSLGGSIIRISFSQLQTI 432

[Close]
BLAST of CmoCh09G012430 vs. ExPASy Swiss-Prot
Match: P26599 (Polypyrimidine tract-binding protein 1 OS=Homo sapiens OX=9606 GN=PTBP1 PE=1 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 5.9e-77
Identity = 177/479 (36.95%), Postives = 268/479 (55.95%), Query Frame = 0 

Query: 16  PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQFFAN 75
           PS+VIH+R +  +++E +++ L  PFG +T L+ML+ KNQA I+M    +A   + ++ +
Sbjct: 57  PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116

Query: 76  VQPSIRGRNVYVQFSSHQELTTADQNAQGR------------------------------ 135
           V P +RG+ +Y+QFS+H+EL T     Q R                              
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176

Query: 136 --GDEPNRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCA 195
             G  P  +L + + ++ YP+T++VLHQ+F   G V KI+TF K+  FQAL+QY     A
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 236

Query: 196 ISARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPSLPSEPKGRSSQQPGY 255
             A+ +L G+NIY+ CC L I FS L  L V YNN++SRD+T P LPS     S  Q   
Sbjct: 237 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQT-M 296

Query: 256 GDAGGMYALQASGA-GPVGFPQMANAAAVAAAFGGGLPPGVSGTNDRCTVLVSNLNPDRI 315
             A G+      GA  P+  P   +AAA AAA G    PG++G  +   +LVSNLNP+R+
Sbjct: 297 AAAFGLSVPNVHGALAPLAIP---SAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERV 356

Query: 316 DEDKLFNLFSIYGNIARIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFS 375
               LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+  L G  L GK + +  S
Sbjct: 357 TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 416

Query: 376 KHPNI---TQGAD----THEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEE 435
           KH N+    +G +    T +Y NS L+RF +  +KN++    P+  +H+S++   V+EE+
Sbjct: 417 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEED 476

Query: 436 IVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATEALVCKHASSL-SGSIIRISFSQ 454
           +  L   +G ++    F    +K ALI   + E+A +AL+  H   L     +R+SFS+
Sbjct: 477 LKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 528

[Close]
BLAST of CmoCh09G012430 vs. ExPASy Swiss-Prot
Match: Q8WN55 (Polypyrimidine tract-binding protein 1 OS=Bos taurus OX=9913 GN=PTBP1 PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 6.6e-76
Identity = 175/479 (36.53%), Postives = 268/479 (55.95%), Query Frame = 0 

Query: 16  PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQFFAN 75
           PS+VIH+R +  +++E +++ L  PFG +T L+ML+ KNQA I+M    +A   + ++ +
Sbjct: 57  PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTS 116

Query: 76  VQPSIRGRNVYVQFSSHQELTTADQNAQGR------------------------------ 135
           V P +RG+ +Y+QFS+H+EL T     Q R                              
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176

Query: 136 --GDEPNRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCA 195
             G  P  +L + + ++ YP+T++VLHQ+F   G V KI+TF K+  FQAL+QY     A
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 236

Query: 196 ISARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPSLPSEPKGRSSQQPGY 255
             A+ +L G+NIY+ CC L I FS L  L V YNN++SRD+T P LPS     S  Q   
Sbjct: 237 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQT-M 296

Query: 256 GDAGGMYALQASGA-GPVGFPQMANAAAVAAAFGGGLPPGVSGTNDRCTVLVSNLNPDRI 315
             A G+      GA  P+  P   +AAA AAA G    PG++G  +   +LVSNLNP+R+
Sbjct: 297 AAAFGLSVPNVHGALAPLAIP---SAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERV 356

Query: 316 DEDKLFNLFSIYGNIARIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFS 375
               LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+  L G  L GK + +  S
Sbjct: 357 TPQSLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLS 416

Query: 376 KHPNI---TQGAD----THEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEE 435
           KH ++    +G +    T +Y NS L+RF +  +KN++    P+  +H+S++   ++E++
Sbjct: 417 KHQSVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDD 476

Query: 436 IVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATEALVCKHASSL-SGSIIRISFSQ 454
           +  L   +G I+    F    +K ALI   + E+A +AL+  H   L     +R+SFS+
Sbjct: 477 LKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528

[Close]
BLAST of CmoCh09G012430 vs. ExPASy Swiss-Prot
Match: Q29099 (Polypyrimidine tract-binding protein 1 OS=Sus scrofa OX=9823 GN=PTBP1 PE=2 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.5e-75
Identity = 179/501 (35.73%), Postives = 272/501 (54.29%), Query Frame = 0 

Query: 16  PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQFFAN 75
           PS+VIH+R +  +++E +++ L  PFG +T L+ML+ KNQA I+M    +A   + ++ +
Sbjct: 57  PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116

Query: 76  VQPSIRGRNVYVQFSSHQELTTADQNAQGR------------------------------ 135
           V P +RG+ +Y+QFS+H+EL T     Q R                              
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176

Query: 136 --GDEPNRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCA 195
             G  P  +L + + ++ YP+T++VLHQ+F   G V KI+TF K+  FQAL+QY     A
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 236

Query: 196 ISARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPSLPS---EPKGRSSQQ 255
             A+ +L G+NIY+ CC L I FS L  L V YNN++SRD+T P LPS   +P    +  
Sbjct: 237 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPSLDQTMA 296

Query: 256 PGYGDAGGMYALQASGAG---PVGFPQMA-----------------NAAAVAAAFGGGLP 315
             +G  G M A   +GAG       PQ A                 +AAA AAA G    
Sbjct: 297 AAFGAPGIMSASPYAGAGFPPTFAIPQAATVSVPNVHGALAPLAIPSAAARAAAAGRIAI 356

Query: 316 PGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALVQMGDGFQA 375
           PG++G  +   +LVSNLNP+R+    LF LF +Y ++ R+K+L NK ++ALVQM DG QA
Sbjct: 357 PGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYCDVQRVKILFNKKENALVQMADGSQA 416

Query: 376 ELAVHFLKGAMLFGKRLEVNFSKHPNI---TQGAD----THEYANSNLNRFNRNAAKNYR 435
           +LA+  L G  L GK + +  SKH N+    +G +    T +Y NS L+RF +  +KN++
Sbjct: 417 QLAMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQ 476

Query: 436 YCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATEA 454
               P+  +H+S++   ++EE++  L   +G I+    F    +K ALI   + E+A +A
Sbjct: 477 NIFPPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQA 536

[Close]
BLAST of CmoCh09G012430 vs. ExPASy Swiss-Prot
Match: Q00438 (Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Ptbp1 PE=1 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 5.6e-75
Identity = 175/500 (35.00%), Postives = 274/500 (54.80%), Query Frame = 0 

Query: 16  PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQFFAN 75
           PS+VIHVR +  +++E +++ L  PFG +T L+ML+ KNQA I+M    +A   + ++ +
Sbjct: 56  PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 115

Query: 76  VQPSIRGRNVYVQFSSHQELTTADQNAQGR------------------------------ 135
           V P +RG+ +Y+QFS+H+EL T     Q R                              
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175

Query: 136 --GDEPNRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCA 195
             G  P  +L + + ++ YP+T++VLHQ+F   G V KI+TF K+  FQAL+QY     A
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 235

Query: 196 ISARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPSLP---SEPKGRSSQQ 255
             A+ +L G+NIY+ CC L I FS L  L V YNN++SRD+T P LP   S+P    +  
Sbjct: 236 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMA 295

Query: 256 PGYGDAGGMYALQASGAGP----------VGFPQ---------MANAAAVAAAFGGGLPP 315
             +G  G M A   +GA P          +  P          + +AAA AAA G    P
Sbjct: 296 AAFGAPGIMSASPYAGAVPSHLCHPSRAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIP 355

Query: 316 GVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALVQMGDGFQAE 375
           G++G  +   +LVSNLNP+R+    LF LF +YG++ R+K+L NK ++ALV+M DG QA+
Sbjct: 356 GLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQ 415

Query: 376 LAVHFLKGAMLFGKRLEVNFSKHPNI---TQGAD----THEYANSNLNRFNRNAAKNYRY 435
           LA+  L G  L GK + +  SKH ++    +G +    T +Y +S L+RF +  +KN++ 
Sbjct: 416 LAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQN 475

Query: 436 CCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATEAL 454
              P+  +H+S++   V+E+++ +L   +G ++    F    +K ALI   + E+A +AL
Sbjct: 476 IFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQAL 535

[Close]
BLAST of CmoCh09G012430 vs. ExPASy TrEMBL
Match: A0A6J1EBK3 (polypyrimidine tract-binding protein homolog 3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432692 PE=4 SV=1)

HSP 1 Score: 877.5 bits (2266), Expect = 2.5e-251
Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0 

Query: 13  MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 72
           MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF
Sbjct: 1   MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 60

Query: 73  FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 132
           FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV
Sbjct: 61  FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120

Query: 133 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL 192
           FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 121 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL 180

Query: 193 QVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVA 252
           QVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVA
Sbjct: 181 QVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVA 240

Query: 253 AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV 312
           AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV
Sbjct: 241 AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV 300

Query: 313 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 372
           QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY
Sbjct: 301 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 360

Query: 373 RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE 432
           RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE
Sbjct: 361 RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE 420

Query: 433 ALVCKHASSLSGSIIRISFSQLQSI 458
           ALVCKHASSLSGSIIRISFSQLQSI
Sbjct: 421 ALVCKHASSLSGSIIRISFSQLQSI 445

[Close]
BLAST of CmoCh09G012430 vs. ExPASy TrEMBL
Match: C0J4I8 (RBP50 OS=Cucurbita maxima OX=3661 GN=LOC111472036 PE=2 SV=1)

HSP 1 Score: 875.5 bits (2261), Expect = 9.4e-251
Identity = 444/445 (99.78%), Postives = 444/445 (99.78%), Query Frame = 0 

Query: 13  MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 72
           MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF
Sbjct: 1   MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 60

Query: 73  FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 132
           FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV
Sbjct: 61  FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120

Query: 133 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL 192
           FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 121 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL 180

Query: 193 QVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVA 252
           QVNYNNERSRDFTNPSLPSEPKGR SQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVA
Sbjct: 181 QVNYNNERSRDFTNPSLPSEPKGRPSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVA 240

Query: 253 AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV 312
           AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV
Sbjct: 241 AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV 300

Query: 313 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 372
           QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY
Sbjct: 301 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 360

Query: 373 RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE 432
           RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE
Sbjct: 361 RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE 420

Query: 433 ALVCKHASSLSGSIIRISFSQLQSI 458
           ALVCKHASSLSGSIIRISFSQLQSI
Sbjct: 421 ALVCKHASSLSGSIIRISFSQLQSI 445

[Close]
BLAST of CmoCh09G012430 vs. ExPASy TrEMBL
Match: A0A6J1EHU2 (polypyrimidine tract-binding protein homolog 3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432692 PE=4 SV=1)

HSP 1 Score: 870.9 bits (2249), Expect = 2.3e-249
Identity = 444/445 (99.78%), Postives = 444/445 (99.78%), Query Frame = 0 

Query: 13  MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 72
           MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF
Sbjct: 1   MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 60

Query: 73  FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 132
           FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV
Sbjct: 61  FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120

Query: 133 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL 192
           FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 121 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL 180

Query: 193 QVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVA 252
           QVNYNNERSRDFTNPSLPSEPKGRSS QPGYGDAGGMYALQASGAGPVGFPQMANAAAVA
Sbjct: 181 QVNYNNERSRDFTNPSLPSEPKGRSS-QPGYGDAGGMYALQASGAGPVGFPQMANAAAVA 240

Query: 253 AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV 312
           AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV
Sbjct: 241 AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV 300

Query: 313 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 372
           QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY
Sbjct: 301 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 360

Query: 373 RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE 432
           RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE
Sbjct: 361 RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE 420

Query: 433 ALVCKHASSLSGSIIRISFSQLQSI 458
           ALVCKHASSLSGSIIRISFSQLQSI
Sbjct: 421 ALVCKHASSLSGSIIRISFSQLQSI 444

[Close]
BLAST of CmoCh09G012430 vs. ExPASy TrEMBL
Match: A0A6J1IER2 (polypyrimidine tract-binding protein homolog 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472036 PE=4 SV=1)

HSP 1 Score: 869.0 bits (2244), Expect = 8.8e-249
Identity = 443/445 (99.55%), Postives = 443/445 (99.55%), Query Frame = 0 

Query: 13  MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 72
           MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF
Sbjct: 1   MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 60

Query: 73  FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 132
           FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV
Sbjct: 61  FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120

Query: 133 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL 192
           FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 121 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL 180

Query: 193 QVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVA 252
           QVNYNNERSRDFTNPSLPSEPKGR S QPGYGDAGGMYALQASGAGPVGFPQMANAAAVA
Sbjct: 181 QVNYNNERSRDFTNPSLPSEPKGRPS-QPGYGDAGGMYALQASGAGPVGFPQMANAAAVA 240

Query: 253 AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV 312
           AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV
Sbjct: 241 AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV 300

Query: 313 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 372
           QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY
Sbjct: 301 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 360

Query: 373 RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE 432
           RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE
Sbjct: 361 RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE 420

Query: 433 ALVCKHASSLSGSIIRISFSQLQSI 458
           ALVCKHASSLSGSIIRISFSQLQSI
Sbjct: 421 ALVCKHASSLSGSIIRISFSQLQSI 444

[Close]
BLAST of CmoCh09G012430 vs. ExPASy TrEMBL
Match: A0A6J1DFL0 (polypyrimidine tract-binding protein homolog 3 OS=Momordica charantia OX=3673 GN=LOC111019646 PE=4 SV=1)

HSP 1 Score: 851.7 bits (2199), Expect = 1.4e-243
Identity = 431/445 (96.85%), Postives = 438/445 (98.43%), Query Frame = 0 

Query: 13  MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 72
           MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF
Sbjct: 1   MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 60

Query: 73  FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 132
           FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV
Sbjct: 61  FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120

Query: 133 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL 192
           FFPHGFVEKIVTFQKSAGFQALIQYQ+RQCA+SARTALQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 121 FFPHGFVEKIVTFQKSAGFQALIQYQSRQCAVSARTALQGRNIYDGCCQLDIQFSNLDEL 180

Query: 193 QVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVA 252
           QVNYNNERSRDFTNPSLPSEPKGRSS QPGYGDAGGMYALQASGA PV FPQMANAAAVA
Sbjct: 181 QVNYNNERSRDFTNPSLPSEPKGRSS-QPGYGDAGGMYALQASGARPVAFPQMANAAAVA 240

Query: 253 AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV 312
           AAFGGGLPPGVSGTNDRCTVLVSNL+PDRIDEDKLFNLFSIYGNI RIKLLRNKPDHALV
Sbjct: 241 AAFGGGLPPGVSGTNDRCTVLVSNLDPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALV 300

Query: 313 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 372
           QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY
Sbjct: 301 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 360

Query: 373 RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE 432
           RYCCSPTKMIHISSLSQEVTEEEI  +LEEHGPI+NTKLFEMNGKKQAL+MFDTEEQATE
Sbjct: 361 RYCCSPTKMIHISSLSQEVTEEEIATVLEEHGPIVNTKLFEMNGKKQALVMFDTEEQATE 420

Query: 433 ALVCKHASSLSGSIIRISFSQLQSI 458
           ALVCKHASSL GSIIRISFSQLQ+I
Sbjct: 421 ALVCKHASSLGGSIIRISFSQLQTI 444

[Close]
BLAST of CmoCh09G012430 vs. TAIR 10
Match: AT1G43190.1 (polypyrimidine tract-binding protein 3 )

HSP 1 Score: 734.2 bits (1894), Expect = 6.5e-212
Identity = 365/445 (82.02%), Postives = 402/445 (90.34%), Query Frame = 0 

Query: 13  MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 72
           M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQAL+QMQDV SAV+ALQF
Sbjct: 1   MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60

Query: 73  FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 132
           F NVQP+IRGRNVYVQFSSHQELTT +QN  GR DEPNRILLVTIHHMLYPITV+VLHQV
Sbjct: 61  FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 120

Query: 133 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL 192
           F P+GFVEK+VTFQKSAGFQALIQYQ +QCA SARTALQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 121 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 180

Query: 193 QVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVA 252
           QVNYNN+RSRD+TNP+LP+E KGRSS  P YGD G            V +PQMAN +A+A
Sbjct: 181 QVNYNNDRSRDYTNPNLPAEQKGRSS-HPCYGDTG------------VAYPQMANTSAIA 240

Query: 253 AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV 312
           AAFGGGLPPG++GTNDRCTVLVSNLN D IDEDKLFNLFS+YGNI RIKLLRNKPDHALV
Sbjct: 241 AAFGGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALV 300

Query: 313 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 372
           QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNIT G D+H+Y NSNLNRFNRNAAKNY
Sbjct: 301 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNY 360

Query: 373 RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE 432
           RYCCSPTKMIH+S+L Q+VTEEE++N ++EHG ++NTK+FEMNGKKQAL+ F+ EE+A E
Sbjct: 361 RYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAE 420

Query: 433 ALVCKHASSLSGSIIRISFSQLQSI 458
           ALVCKHA+SL GSIIRISFSQLQ+I
Sbjct: 421 ALVCKHATSLGGSIIRISFSQLQTI 432

[Close]
BLAST of CmoCh09G012430 vs. TAIR 10
Match: AT1G43190.2 (polypyrimidine tract-binding protein 3 )

HSP 1 Score: 734.2 bits (1894), Expect = 6.5e-212
Identity = 365/445 (82.02%), Postives = 402/445 (90.34%), Query Frame = 0 

Query: 13  MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 72
           M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQAL+QMQDV SAV+ALQF
Sbjct: 1   MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60

Query: 73  FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 132
           F NVQP+IRGRNVYVQFSSHQELTT +QN  GR DEPNRILLVTIHHMLYPITV+VLHQV
Sbjct: 61  FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 120

Query: 133 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL 192
           F P+GFVEK+VTFQKSAGFQALIQYQ +QCA SARTALQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 121 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 180

Query: 193 QVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVA 252
           QVNYNN+RSRD+TNP+LP+E KGRSS  P YGD G            V +PQMAN +A+A
Sbjct: 181 QVNYNNDRSRDYTNPNLPAEQKGRSS-HPCYGDTG------------VAYPQMANTSAIA 240

Query: 253 AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV 312
           AAFGGGLPPG++GTNDRCTVLVSNLN D IDEDKLFNLFS+YGNI RIKLLRNKPDHALV
Sbjct: 241 AAFGGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALV 300

Query: 313 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 372
           QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNIT G D+H+Y NSNLNRFNRNAAKNY
Sbjct: 301 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNY 360

Query: 373 RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE 432
           RYCCSPTKMIH+S+L Q+VTEEE++N ++EHG ++NTK+FEMNGKKQAL+ F+ EE+A E
Sbjct: 361 RYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAE 420

Query: 433 ALVCKHASSLSGSIIRISFSQLQSI 458
           ALVCKHA+SL GSIIRISFSQLQ+I
Sbjct: 421 ALVCKHATSLGGSIIRISFSQLQTI 432

[Close]
BLAST of CmoCh09G012430 vs. TAIR 10
Match: AT1G43190.3 (polypyrimidine tract-binding protein 3 )

HSP 1 Score: 724.5 bits (1869), Expect = 5.1e-209
Identity = 363/445 (81.57%), Postives = 400/445 (89.89%), Query Frame = 0 

Query: 13  MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 72
           M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQAL+QMQDV SAV+ALQF
Sbjct: 1   MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60

Query: 73  FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 132
           F NVQP+I  RNVYVQFSSHQELTT +QN  GR DEPNRILLVTIHHMLYPITV+VLHQV
Sbjct: 61  FTNVQPTI--RNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 120

Query: 133 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL 192
           F P+GFVEK+VTFQKSAGFQALIQYQ +QCA SARTALQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 121 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 180

Query: 193 QVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVA 252
           QVNYNN+RSRD+TNP+LP+E KGRSS  P YGD G            V +PQMAN +A+A
Sbjct: 181 QVNYNNDRSRDYTNPNLPAEQKGRSS-HPCYGDTG------------VAYPQMANTSAIA 240

Query: 253 AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV 312
           AAFGGGLPPG++GTNDRCTVLVSNLN D IDEDKLFNLFS+YGNI RIKLLRNKPDHALV
Sbjct: 241 AAFGGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALV 300

Query: 313 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 372
           QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNIT G D+H+Y NSNLNRFNRNAAKNY
Sbjct: 301 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNY 360

Query: 373 RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE 432
           RYCCSPTKMIH+S+L Q+VTEEE++N ++EHG ++NTK+FEMNGKKQAL+ F+ EE+A E
Sbjct: 361 RYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAE 420

Query: 433 ALVCKHASSLSGSIIRISFSQLQSI 458
           ALVCKHA+SL GSIIRISFSQLQ+I
Sbjct: 421 ALVCKHATSLGGSIIRISFSQLQTI 430

[Close]
BLAST of CmoCh09G012430 vs. TAIR 10
Match: AT3G01150.1 (polypyrimidine tract-binding protein 1 )

HSP 1 Score: 149.4 bits (376), Expect = 6.8e-36
Identity = 107/349 (30.66%), Postives = 177/349 (50.72%), Query Frame = 0 

Query: 16  PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALIQMQDVPSAVNALQFF 75
           PSKV+H+RN+  E  E +L+ L + FG I  TK  +   +NQA ++  D+  A++ + ++
Sbjct: 15  PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74

Query: 76  ANVQ--PSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 135
           A+      IRG+ VY+Q+S+  E+     N Q  GD P  +LLVT   +  + ++++V+H
Sbjct: 75  ASSSEPAQIRGKTVYIQYSNRHEIV----NNQSPGDVPGNVLLVTFEGVESHEVSIDVIH 134

Query: 136 QVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNI-------YDGCCQLD 195
            VF   GFV KI TF+K+AGFQAL+Q+   + A +AR+AL GR+I       + G C L 
Sbjct: 135 LVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLR 194

Query: 196 IQFSNLDELQVNYNNERSRDFTNPSLP-SEPKGRSSQQPGYGDAGGMYALQASGAGPVGF 255
           + +S   +L + + + RSRD+TNP LP ++     S QP  G  G               
Sbjct: 195 MSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADG--------------- 254

Query: 256 PQMANAAAVAAAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKL 315
                               V   ++    L+ N+    +  D L  +FS YG + +I +
Sbjct: 255 ------------------KKVESQSNVLLGLIENMQ-YAVTVDVLHTVFSAYGTVQKIAI 314

Query: 316 L-RNKPDHALVQMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKHPNI 348
             +N    AL+Q  D   A +A   L+G  ++     +L +++S+H ++
Sbjct: 315 FEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDL 325

[Close]
BLAST of CmoCh09G012430 vs. TAIR 10
Match: AT5G53180.1 (polypyrimidine tract-binding protein 2 )

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-33
Identity = 106/351 (30.20%), Postives = 180/351 (51.28%), Query Frame = 0 

Query: 16  PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALIQMQDVPSAVNALQFF 75
           PSKV+H+RN+  E +E +L++L +PFG +  TK  +   +NQA I+ +D+  A+  + ++
Sbjct: 16  PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYY 75

Query: 76  ANVQ--PSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIH-HMLYPITVEVLH 135
           A+      +RG+ VY+Q+S+ QE+     N +   D    +LLVTI       ++++VLH
Sbjct: 76  ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVVGNVLLVTIEGDDARMVSIDVLH 135

Query: 136 QVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNI-------YDGCCQLD 195
            VF   GFV KI TF+K+AG+QAL+Q+   + A +A+ AL GR+I         G C L 
Sbjct: 136 LVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLK 195

Query: 196 IQFSNLDELQVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFP 255
           I +S   +L V + + RSRD+TNP LP  P                 A+ ++G   VG  
Sbjct: 196 ITYSAHTDLTVKFQSHRSRDYTNPYLPVAPS----------------AIDSTGQVAVGVD 255

Query: 256 QMANAAAVAAAFGGGLPPGVSGTNDRCTVLVSNLNPDR--IDEDKLFNLFSIYGNIARIK 315
                       G  + P          VL++++   +  +  D L  +F+ +G + +I 
Sbjct: 256 ------------GKKMEP-------ESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIA 315

Query: 316 LL-RNKPDHALVQMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKHPNIT 349
           +  +N    AL+Q  D   A +A   L+G  ++     +L + +S+H +++
Sbjct: 316 MFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLS 327

The following BLAST results are available for this feature:
BLAST of CmoCh09G012430 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6ICX49.1e-21182.02Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana OX=3702 G... [more]
P265995.9e-7736.95Polypyrimidine tract-binding protein 1 OS=Homo sapiens OX=9606 GN=PTBP1 PE=1 SV=... [more]
Q8WN556.6e-7636.53Polypyrimidine tract-binding protein 1 OS=Bos taurus OX=9913 GN=PTBP1 PE=2 SV=1[more]
Q290991.5e-7535.73Polypyrimidine tract-binding protein 1 OS=Sus scrofa OX=9823 GN=PTBP1 PE=2 SV=1[more]
Q004385.6e-7535.00Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Ptbp1 PE... [more]
BLAST of CmoCh09G012430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EBK32.5e-251100.00polypyrimidine tract-binding protein homolog 3-like isoform X1 OS=Cucurbita mosc... [more]
C0J4I89.4e-25199.78RBP50 OS=Cucurbita maxima OX=3661 GN=LOC111472036 PE=2 SV=1[more]
A0A6J1EHU22.3e-24999.78polypyrimidine tract-binding protein homolog 3-like isoform X2 OS=Cucurbita mosc... [more]
A0A6J1IER28.8e-24999.55polypyrimidine tract-binding protein homolog 3 isoform X2 OS=Cucurbita maxima OX... [more]
A0A6J1DFL01.4e-24396.85polypyrimidine tract-binding protein homolog 3 OS=Momordica charantia OX=3673 GN... [more]
BLAST of CmoCh09G012430 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G43190.16.5e-21282.02polypyrimidine tract-binding protein 3 [more]
AT1G43190.26.5e-21282.02polypyrimidine tract-binding protein 3 [more]
AT1G43190.35.1e-20981.57polypyrimidine tract-binding protein 3 [more]
AT3G01150.16.8e-3630.66polypyrimidine tract-binding protein 1 [more]
AT5G53180.11.4e-3330.20polypyrimidine tract-binding protein 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 381..450
e-value: 1.3E-8
score: 44.6
coord: 271..340
e-value: 1.9E-12
score: 57.3
coord: 114..183
e-value: 0.79
score: 7.4
coord: 19..88
e-value: 9.3E-9
score: 45.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 384..445
e-value: 3.5E-7
score: 30.0
coord: 21..71
e-value: 2.4E-6
score: 27.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 270..344
score: 13.020831
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 380..454
score: 11.485845
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 18..92
score: 11.383512
IPR021790PTBP1, RNA recognition motif 2-likePFAMPF11835RRM_8coord: 108..187
e-value: 4.1E-20
score: 71.8
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 12..109
e-value: 2.3E-26
score: 94.1
coord: 363..457
e-value: 1.3E-14
score: 56.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 110..213
e-value: 2.1E-35
score: 123.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 264..362
e-value: 5.7E-26
score: 92.6
IPR006536HnRNP-L/PTBTIGRFAMTIGR01649TIGR01649coord: 16..453
e-value: 3.3E-115
score: 383.8
NoneNo IPR availablePFAMPF13893RRM_5coord: 255..356
e-value: 4.7E-33
score: 113.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 200..223
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 200..218
NoneNo IPR availablePANTHERPTHR15592MATRIN 3/NUCLEAR PROTEIN 220-RELATEDcoord: 13..456
NoneNo IPR availablePANTHERPTHR15592:SF35POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3coord: 13..456
NoneNo IPR availableCDDcd12426RRM4_PTBPH3coord: 373..451
e-value: 1.77889E-44
score: 148.406
IPR034797PTBPH3, RNA recognition motif 3CDDcd12698RRM3_PTBPH3coord: 269..344
e-value: 7.73412E-49
score: 159.675
IPR034795PTBPH3, RNA recognition motif 1CDDcd12687RRM1_PTBPH3coord: 18..92
e-value: 4.40748E-46
score: 152.405
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 268..451
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 14..103
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 109..210

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G012430.1CmoCh09G012430.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding