CmoCh09G012210 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G012210
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein S12
LocationCmo_Chr09: 9680973 .. 9682744 (+)
RNA-Seq ExpressionCmoCh09G012210
SyntenyCmoCh09G012210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGAGAAGAAAAACGGTGTACGGACTATACTTGAGCTTCAGATCAATGTATCCAAAAGCAAGGAGTATGCATGCGTCTTTCAATGAGAACATTGAAAAAACCTAATTCAGCTCTATGTAAGATAGCCCAAGTACGAAAACGGTGCACAGACCGTACTCGAGCTTTGGATCAATATCCCCAGAAGCCAGGAGTACATTTGCGTCTTTCAACGAGAACACTTAAAAAAACCTAATTCAAATCCACGTAAGATAGCCAAAGTACGAAAACGGCGCATGGACCATACTCAAGCTTCGAATCAATGTCCTCAGAAGCAAAGTGTACGCTCATGTCTTTCAACGAGAATACTGAAAAAACATAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGCACACGGATTGTACTCGAGCTTCAAATCAATATTCACAAAAGCAAGGAGTACGCTTGCGTCTTTCAACGAGAACACTAAAAAAACCTAATTCAACTCTATGTAAGATAAACAAAGTACGAAAATGGCACAGGGACTGTACTCGAGCTTCAGATCAATATCCCAAGAAGCAAGGAGTATGCGCCCGTCCTTCAACGAGAACACGAAAAAATCTGATTCAACTCAACGTAAGATAGCCAAAGTACGAAAACGGCGCACGAACTGTACTAGAGCTTCAGATCAATATCTCCAGAAGCAAGAAGTATGCCCGCGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGTGCACGGACCGTACTCGAGCTTTGGATCAATGTCCCCTGAAGCAAAGAGTACGCTTGCGTCTTTCAACGAGAAAATCAAAAAAATCTAATTCAGCTATACTTAAGATAGCCAAAGTACGAAAACAGCGCACAGACCGTACTTGAGCTTCAGATCAATATCCCCAGAAGCAAGGAGTACGCTCACGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGCACACGAACCGTACTCGAGCTTCAGATCAATGTCCCTTGAAGCAAGGAGTACGCCCGCGTCTTTCAACAAGAATATCGAAAAAACCTAATTAAGCTCTACTTAAGATAGCCAAAGTACGAAAACGGCGCACGAAATCGTACTTGAGCTTCAGATCAATATCCCTAGAAGCAAGGAGTACGCTCGTGTCTTTCAATGAGAATACTGAAAAAAAACCTAATTTAGCTCTACGTAAGATAGACAAAGTACAAAAATGGCGCACGGACTGTACTCGAGCTTTGGATCAATATCCTCATAAGCATGGAGTACACTCGCGTCTTTCAATGAGAACACTGAAAAAACCTAATTCAACTCTATGTAAGATAGACAAAGTACGTAAATGGCGCACGGACTGTACTCGAGCTTCGGATCAATATCCCTAGAAGCAAGGAATACGCTCGCGTCTTTCAACGAGAATACCAAAAAAACCTAATTTAACTCCATGTAAGATAGCCAAAGTACGAAAATGGCACACGGACTATACTCGAGCTTCAGATCAATGTCCTTAGAAGCAAGGAGTACGACCGTATCTTTCAACGAGAACACCGGAAAAACTTAATTTAGCTCCACGTAAGATAGGCAAAGTACGAAAACAGCGCACGGACCGCACTCAAGCTTCGAATCAATATCCCAAAAAGCAAGGAGTACGCTTGTGTCTTTCAACGAGAACACCGTAAAAACCTAATTCAGCTCCATGTAAGATAG

mRNA sequence

ATGGTAGAGAAGAAAAACGGTGTACGGACTATACTTGAGCTTCAGATCAATGTATCCAAAAGCAAGGAGTATGCATGCCCCAAGTACGAAAACGGTGCACAGACCGTACTCGAGCTTTGGATCAATATCCCCAGAAGCCAGGAGTACATTTGCGTCTTTCAACGAGAACACTTAAAAAAACCTAATTCAAATCCACGTAAGATAGCCAAAGTACGAAAACGGCGCATGGACCATACTCAAGCTTCGAATCAATGTCCTCAGAAGCAAAGTGTACGCTCATGTCTTTCAACGAGAATACTGAAAAAACATAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGCACACGGATTGTACTCGAGCTTCAAATCAATATTCACAAAAGCAAGGAGTACGCTTGCGTCTTTCAACGAGAACACTAAAAAAACCTAATTCAACTCTATGTAAGATAAACAAAGTACGAAAATGGCACAGGGACTGTACTCGAGCTTCAGATCAATATCCCAAGAAGCAAGGAGTATGCGCCCGTCCTTCAACGAGAACACGAAAAAATCTGATTCAACTCAACCCAAAGTACGAAAACGGCGCACGAACTGTACTAGAGCTTCAGATCAATATCTCCAGAAGCAAGAAGTATGCCCGCGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGTGCACGGACCGTACTCGAGCTTTGGATCAATGTCCCCTGAAGCAAAGATACGAAAACAGCGCACAGACCGTACTTGAGCTTCAGATCAATATCCCCAGAAGCAAGGAGTACGCTCACGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGCACACGAACCGTACTCGAGCTTCAGATCAATGTCCCTTGAAGCAAGGAATAGCCAAAGTACGAAAACGGCGCACGAAATCGTACTTGAGCTTCAGATCAATATCCCTAGAAGCAAGGAGTACGCTCGTGTCTTTCAATGAGAATACTGAAAAAAAACCTAATTTAGCTCTACGTAAGATAGACAAAGTACAAAAATGGCGCACGGACTGTACTCGAGCTTTGGATCAATATCCTCATAAGCATGGAGTACACTCGCGTCTTTCAATGAGAACACTGAAAAAACCTAATTCAACTCTATGTAAGATAGACAAAGCAAAGTACGAAAACAGCGCACGGACCGCACTCAAGCTTCGAATCAATATCCCAAAAAGCAAGGAGTACGCTTGTGTCTTTCAACGAGAACACCGTAAAAACCTAATTCAGCTCCATGTAAGATAG

Coding sequence (CDS)

ATGGTAGAGAAGAAAAACGGTGTACGGACTATACTTGAGCTTCAGATCAATGTATCCAAAAGCAAGGAGTATGCATGCCCCAAGTACGAAAACGGTGCACAGACCGTACTCGAGCTTTGGATCAATATCCCCAGAAGCCAGGAGTACATTTGCGTCTTTCAACGAGAACACTTAAAAAAACCTAATTCAAATCCACGTAAGATAGCCAAAGTACGAAAACGGCGCATGGACCATACTCAAGCTTCGAATCAATGTCCTCAGAAGCAAAGTGTACGCTCATGTCTTTCAACGAGAATACTGAAAAAACATAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGCACACGGATTGTACTCGAGCTTCAAATCAATATTCACAAAAGCAAGGAGTACGCTTGCGTCTTTCAACGAGAACACTAAAAAAACCTAATTCAACTCTATGTAAGATAAACAAAGTACGAAAATGGCACAGGGACTGTACTCGAGCTTCAGATCAATATCCCAAGAAGCAAGGAGTATGCGCCCGTCCTTCAACGAGAACACGAAAAAATCTGATTCAACTCAACCCAAAGTACGAAAACGGCGCACGAACTGTACTAGAGCTTCAGATCAATATCTCCAGAAGCAAGAAGTATGCCCGCGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGTGCACGGACCGTACTCGAGCTTTGGATCAATGTCCCCTGAAGCAAAGATACGAAAACAGCGCACAGACCGTACTTGAGCTTCAGATCAATATCCCCAGAAGCAAGGAGTACGCTCACGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGCACACGAACCGTACTCGAGCTTCAGATCAATGTCCCTTGAAGCAAGGAATAGCCAAAGTACGAAAACGGCGCACGAAATCGTACTTGAGCTTCAGATCAATATCCCTAGAAGCAAGGAGTACGCTCGTGTCTTTCAATGAGAATACTGAAAAAAAACCTAATTTAGCTCTACGTAAGATAGACAAAGTACAAAAATGGCGCACGGACTGTACTCGAGCTTTGGATCAATATCCTCATAAGCATGGAGTACACTCGCGTCTTTCAATGAGAACACTGAAAAAACCTAATTCAACTCTATGTAAGATAGACAAAGCAAAGTACGAAAACAGCGCACGGACCGCACTCAAGCTTCGAATCAATATCCCAAAAAGCAAGGAGTACGCTTGTGTCTTTCAACGAGAACACCGTAAAAACCTAATTCAGCTCCATGTAAGATAG

Protein sequence

MVEKKNGVRTILELQINVSKSKEYACPKYENGAQTVLELWINIPRSQEYICVFQREHLKKPNSNPRKIAKVRKRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVRKRHTDCTRASNQYSQKQGVRLRLSTRTLKKPNSTLCKINKVRKWHRDCTRASDQYPKKQGVCARPSTRTRKNLIQLNPKYENGARTVLELQINISRSKKYARVFQREHRKKPNSAPRKIAKVRKRCTDRTRALDQCPLKQRYENSAQTVLELQINIPRSKEYAHVFQREHRKKPNSAPRKIAKVRKRHTNRTRASDQCPLKQGIAKVRKRRTKSYLSFRSISLEARSTLVSFNENTEKKPNLALRKIDKVQKWRTDCTRALDQYPHKHGVHSRLSMRTLKKPNSTLCKIDKAKYENSARTALKLRINIPKSKEYACVFQREHRKNLIQLHVR
Homology
[Close]
BLAST of CmoCh09G012210 vs. ExPASy Swiss-Prot
Match: P60096 (Ribosomal protein S12, mitochondrial OS=Magnolia grandiflora OX=3406 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-06
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 73  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR 115
           KRR D T+AS+QCPQKQ VR  + TR  KK NSAPRKIAKVR
Sbjct: 15  KRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVR 56

[Close]
BLAST of CmoCh09G012210 vs. ExPASy Swiss-Prot
Match: P60097 (Ribosomal protein S12, mitochondrial OS=Magnolia soulangeana OX=3407 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-06
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 73  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR 115
           KRR D T+AS+QCPQKQ VR  + TR  KK NSAPRKIAKVR
Sbjct: 15  KRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVR 56

[Close]
BLAST of CmoCh09G012210 vs. ExPASy Swiss-Prot
Match: P27070 (Ribosomal protein S12, mitochondrial OS=Panax ginseng OX=4054 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-06
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 73  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR 115
           KRR D T+AS+QCPQKQ VR  + TR  KK NSAPRKIAKVR
Sbjct: 15  KRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVR 56

[Close]
BLAST of CmoCh09G012210 vs. ExPASy Swiss-Prot
Match: P28520 (Ribosomal protein S12, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.6e-05
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 115 KRHTDCTRASNQYSQKQGVRLRLSTRTLKKPNSTLCKINKVRKWHR 161
           K+ TD TRAS+Q  QKQGV LR+STRT KKPNS L KI KVR  +R
Sbjct: 15  KQRTDRTRASDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNR 60

[Close]
BLAST of CmoCh09G012210 vs. ExPASy Swiss-Prot
Match: Q95869 (Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.0e-05
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 73  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR 115
           KRR D T+A +QCPQKQ V   +STR  KK NSAPRKIAKVR
Sbjct: 15  KRRTDRTRALDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVR 56

[Close]
BLAST of CmoCh09G012210 vs. ExPASy TrEMBL
Match: A0A6A5L832 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00002102 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.0e-05
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 73  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR 115
           KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Sbjct: 179 KRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVR 220

[Close]
BLAST of CmoCh09G012210 vs. ExPASy TrEMBL
Match: A0A385G2D2 (Ribosomal protein S12 OS=Ammopiptanthus mongolicus OX=126911 GN=rps12 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.0e-05
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 73  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR 115
           KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Sbjct: 15  KRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVR 56

[Close]
BLAST of CmoCh09G012210 vs. ExPASy TrEMBL
Match: Q7J5Z4 (Ribosomal protein S12 OS=Lupinus luteus OX=3873 GN=rps12 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.0e-05
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 73  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR 115
           KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Sbjct: 15  KRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVR 56

[Close]
BLAST of CmoCh09G012210 vs. ExPASy TrEMBL
Match: A0A6A4P1M9 (Putative ribosomal protein S12/S23 OS=Lupinus albus OX=3870 GN=Lalb_Chr17g0337391 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.0e-05
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 73  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR 115
           KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Sbjct: 15  KRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVR 56

[Close]
BLAST of CmoCh09G012210 vs. ExPASy TrEMBL
Match: O47435 (Ribosomal protein S12 OS=Lupinus albus OX=3870 GN=rps12 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.0e-05
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 73  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR 115
           KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Sbjct: 15  KRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVR 56

[Close]
BLAST of CmoCh09G012210 vs. NCBI nr
Match: KAG7014891.1 (hypothetical protein SDJN02_22522, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.8 bits (216), Expect = 2.6e-13
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 0 

Query: 382 HGVHSRLSMRTLKKPNSTLCKIDKAKYENSARTALKLRINIPKSKEYACVFQREHRKNLI 441
           HG++S     +L+  ++T      AKYENSARTALKLRINIPKSKEYACVFQREHRKNLI
Sbjct: 3   HGLYSSFRSMSLEARSTT------AKYENSARTALKLRINIPKSKEYACVFQREHRKNLI 61

Query: 442 QLHVR 447
           QLHVR
Sbjct: 63  QLHVR 61

[Close]
BLAST of CmoCh09G012210 vs. NCBI nr
Match: KAG2611575.1 (hypothetical protein PVAP13_4KG104120 [Panicum virgatum])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-07
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 257 ENSAQTVLELQINIPRSKEYAHVFQREHRKKPNSAPRKIAKVR 300
           +N A+TVLEL+IN+PRSKEYA VF+REHRKKPNSA RKIAKVR
Sbjct: 5   KNGARTVLELRINVPRSKEYACVFRREHRKKPNSALRKIAKVR 47

[Close]
BLAST of CmoCh09G012210 vs. NCBI nr
Match: KAF3452163.1 (hypothetical protein FNV43_RR08261 [Rhamnella rubrinervis])

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-06
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 401 CKIDKAKYENSARTALKLRINIPKSKEYACVFQREHRKNLIQLH 445
           C  D ++ +N ART L+LRIN+P+SKEYA VFQREH+KNLIQLH
Sbjct: 282 CGFDPSEKKNGARTVLELRINVPRSKEYARVFQREHQKNLIQLH 325

[Close]
BLAST of CmoCh09G012210 vs. NCBI nr
Match: XP_042751547.1 (ribosomal protein S12, mitochondrial-like [Lactuca sativa])

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-05
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 73  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR 115
           KRR D T+AS+QCPQKQ VR C+ TR  KK NSAPRKIAKVR
Sbjct: 15  KRRTDRTRASDQCPQKQGVRPCVPTRTPKKPNSAPRKIAKVR 56

[Close]
BLAST of CmoCh09G012210 vs. NCBI nr
Match: GEV07194.1 (NADH dehydrogenase subunit 3, mitochondrial [Tanacetum cinerariifolium])

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-04
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 409  ENSARTALKLRINIPKSKEYACVFQREHRKNLIQLH 445
            EN ART L+L IN+P+SKEYA V++REHRKNLIQLH
Sbjct: 1210 ENGARTVLELWINVPRSKEYARVYRREHRKNLIQLH 1245

[Close]
BLAST of CmoCh09G012210 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 48.1 bits (113), Expect = 2.1e-05
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 73  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR 115
           KRR D T+A ++CPQK  V   +STR  KK NSAPRKIAKVR
Sbjct: 15  KRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVR 56

[Close]
BLAST of CmoCh09G012210 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 48.1 bits (113), Expect = 2.1e-05
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 73  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR 115
           KRR D T+A ++CPQK  V   +STR  KK NSAPRKIAKVR
Sbjct: 15  KRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVR 56

The following BLAST results are available for this feature:
BLAST of CmoCh09G012210 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P600961.8e-0671.43Ribosomal protein S12, mitochondrial OS=Magnolia grandiflora OX=3406 GN=RPS12 PE... [more]
P600971.8e-0671.43Ribosomal protein S12, mitochondrial OS=Magnolia soulangeana OX=3407 GN=RPS12 PE... [more]
P270701.8e-0671.43Ribosomal protein S12, mitochondrial OS=Panax ginseng OX=4054 GN=RPS12 PE=3 SV=1[more]
P285201.6e-0567.39Ribosomal protein S12, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
Q958692.0e-0569.05Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPS12 PE... [more]
BLAST of CmoCh09G012210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A5L8328.0e-0576.19Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00002102 PE=3 SV=1[more]
A0A385G2D28.0e-0576.19Ribosomal protein S12 OS=Ammopiptanthus mongolicus OX=126911 GN=rps12 PE=3 SV=1[more]
Q7J5Z48.0e-0576.19Ribosomal protein S12 OS=Lupinus luteus OX=3873 GN=rps12 PE=3 SV=1[more]
A0A6A4P1M98.0e-0576.19Putative ribosomal protein S12/S23 OS=Lupinus albus OX=3870 GN=Lalb_Chr17g033739... [more]
O474358.0e-0576.19Ribosomal protein S12 OS=Lupinus albus OX=3870 GN=rps12 PE=3 SV=1[more]
BLAST of CmoCh09G012210 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014891.12.6e-1370.77hypothetical protein SDJN02_22522, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG2611575.11.6e-0781.40hypothetical protein PVAP13_4KG104120 [Panicum virgatum][more]
KAF3452163.11.4e-0668.18hypothetical protein FNV43_RR08261 [Rhamnella rubrinervis][more]
XP_042751547.15.7e-0573.81ribosomal protein S12, mitochondrial-like [Lactuca sativa][more]
GEV07194.11.7e-0475.00NADH dehydrogenase subunit 3, mitochondrial [Tanacetum cinerariifolium][more]
BLAST of CmoCh09G012210 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07675.12.1e-0564.29Ribosomal protein S12/S23 family protein [more]
ATMG00980.12.1e-0564.29Ribosomal protein S12/S23 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11652:SF55SUBFAMILY NOT NAMEDcoord: 73..116
coord: 368..432
NoneNo IPR availablePANTHERPTHR11652:SF55SUBFAMILY NOT NAMEDcoord: 115..160
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 73..116
coord: 368..432
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 115..160
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 286..293
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 224..231

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G012210.1CmoCh09G012210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome