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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGAACACTACAGCCGCGTTGCACCATAGCATAGCTCCAAGGAAAATATCTCATCATGGTCGGTTTGTCTTTGCCTTCGAACTATAATTATTTTTTACGCACTCAGCTTTGTTTTATAATTATAATATTCGCACCAGGCGAGGGTACTTTGGTACTTTCACATACATGCCACGTATGCAGTAATGTTGAGCTCTCACAGCGCTTCTAAAGATCTCATATCTTTCTCTCTCTAAACTGACGGCCCTTGAAAAGATTCCCCTCTCTCTCTCTACACTGAAAATTACTTGGCATAAAAACAAAGGAATATACCTTCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGTTACAGTTTGTGGAATTTCTTGGCTGAAGCGGAATCGATTTTCAGGTACTTCGTTTTCTTTTACCGTTTTTTTGATGTGAATCGGTGACATTTAGAAAAGAAGTTGCGAAATCTGAATTGAAGCTTGGATCATCTGGTTGTTTTTTTTTTTTTTTTTTAATTTGATTTGTTGTATTCGTTTTGAAAGCTGTTGTTTACCTTCTTGTTTCTGATTTGAGTTTTGTTGTTTGTGATTTTGTATGATTTGTTCGTTTTTGGTTTAATTTTGACTTCATTTTGTTGTTTATGGTTTATTGATTTACGTTATTATTATTTTTTCTTTTTATTTCATCTTGCAGAGGATTGGTTTTATTGTTGTTATGGCAATTGTAAGTATGGAGTTGTGAACTTGGGAGCTTCTCAGGAACTGGAACTTGAAAAATCTATAGCGGTACAAGGGGTTGGGTTTTGGTGA mRNA sequence ATGAACACTACAGCCGCGTTGCACCATAGCATAGCTCCAAGGAAAATATCTCATCATGGTCGGAATATACCTTCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGTTACAGTTTGTGGAATTTCTTGGCTGAAGCGGAATCGATTTTCAGAGGATTGGTTTTATTGTTGTTATGGCAATTGTAAGTATGGAGTTGTGAACTTGGGAGCTTCTCAGGAACTGGAACTTGAAAAATCTATAGCGGTACAAGGGGTTGGGTTTTGGTGA Coding sequence (CDS) ATGAACACTACAGCCGCGTTGCACCATAGCATAGCTCCAAGGAAAATATCTCATCATGGTCGGAATATACCTTCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGTTACAGTTTGTGGAATTTCTTGGCTGAAGCGGAATCGATTTTCAGAGGATTGGTTTTATTGTTGTTATGGCAATTGTAAGTATGGAGTTGTGAACTTGGGAGCTTCTCAGGAACTGGAACTTGAAAAATCTATAGCGGTACAAGGGGTTGGGTTTTGGTGA Protein sequence MNTTAALHHSIAPRKISHHGRNIPSRERERERERERERERERERVTVCGISWLKRNRFSEDWFYCCYGNCKYGVVNLGASQELELEKSIAVQGVGFW
Homology
BLAST of CmoCh09G011340 vs. NCBI nr
Match: KAG6592206.1 (hypothetical protein SDJN03_14552, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 78.2 bits (191), Expect = 4.4e-11 Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0
Query: 55 RNRFSEDWFYCCYGNCKYGVVNLGASQELELEKSIA 91
RNRF EDWFYCCY NCKYGVVNLGASQELELEKSIA
Sbjct: 11 RNRFLEDWFYCCYENCKYGVVNLGASQELELEKSIA 46
BLAST of CmoCh09G011340 vs. NCBI nr
Match: KAG7029181.1 (hypothetical protein SDJN02_10366 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10 Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0
Query: 59 SEDWFYCCYGNCKYGVVNLGASQELELEKSIAV 92
SEDWFYCCYGNCKYGVVNLGASQELELEKSIAV
Sbjct: 17 SEDWFYCCYGNCKYGVVNLGASQELELEKSIAV 49
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6592206.1 | 4.4e-11 | 94.44 | hypothetical protein SDJN03_14552, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG7029181.1 | 1.3e-10 | 100.00 | hypothetical protein SDJN02_10366 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 20..41 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..41 |
Relationships
The following mRNA feature(s) are a part of this gene:
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