CmoCh09G009640 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G009640
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionNAD(P)H-quinone oxidoreductase chain 4, chloroplastic
LocationCmo_Chr09: 5092638 .. 5092992 (+)
RNA-Seq ExpressionCmoCh09G009640
SyntenyCmoCh09G009640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAACGGTCGAATAGGATCATTTTTTGCTCGAGACCTTTTACTATTTATCATTAGTGGAAGTTAGAATTAATTCCCGTATATCTACTTCTATCGATGTGAGGAGGAAAGAAACCGTTAACCTTACTATTTTTTATCATGTGGGAGTTAGAATTAATTGTCGTTTATCTACTTCTATCAATGTGGGGAGGAAAGAAATGGTTGTATTCAACTACAAAGTTTATTTTGTACACCCGAGAGGTTCTATTTTTTTTTCGTTGATGGGAGTTATGGGTATCGGTTTATATGGTTCTAACAAACCAGCTTTGAATTTTGAAACATCGGCTAATCAGTCTTATCCTGTAGTGTTGTAA

mRNA sequence

ATGTATAACGGTCGAATAGGATCATTTTTTGCTCGAGACCTTTTACTATTTATCATTATTAGAATTAATTCCCGTATATCTACTTCTATCGATGTGAGGAGGAAAGAAACCGTTAACCTTACTATTTTTTATCATGTGGGAGTTAGAATTAATTGTCGTTTATCTACTTCTATCAATGTGGGGAGGAAAGAAATGGTTGTATTCAACTACAAAGTTTATTTTGTACACCCGAGAGGTTCTATTTTTTTTTCGTTGATGGGAGTTATGGGTATCGGTTTATATGGTTCTAACAAACCAGCTTTGAATTTTGAAACATCGGCTAATCAGTCTTATCCTGTAGTGTTGTAA

Coding sequence (CDS)

ATGTATAACGGTCGAATAGGATCATTTTTTGCTCGAGACCTTTTACTATTTATCATTATTAGAATTAATTCCCGTATATCTACTTCTATCGATGTGAGGAGGAAAGAAACCGTTAACCTTACTATTTTTTATCATGTGGGAGTTAGAATTAATTGTCGTTTATCTACTTCTATCAATGTGGGGAGGAAAGAAATGGTTGTATTCAACTACAAAGTTTATTTTGTACACCCGAGAGGTTCTATTTTTTTTTCGTTGATGGGAGTTATGGGTATCGGTTTATATGGTTCTAACAAACCAGCTTTGAATTTTGAAACATCGGCTAATCAGTCTTATCCTGTAGTGTTGTAA

Protein sequence

MYNGRIGSFFARDLLLFIIIRINSRISTSIDVRRKETVNLTIFYHVGVRINCRLSTSINVGRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPALNFETSANQSYPVVL
Homology
BLAST of CmoCh09G009640 vs. ExPASy Swiss-Prot
Match: Q4VZL8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhD PE=2 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-13
Identity = 48/115 (41.74%), Postives = 65/115 (56.52%), Query Frame = 0

Query: 1   MYNGRIGSFFARDLLLFIIIRINSRISTSIDVRRKETVNLTIFYHVGVRINCRLSTSINV 60
           MY+G+IGSF ARDLLLF I+               E   + ++          L  S+  
Sbjct: 121 MYSGQIGSFSARDLLLFFIM--------------WEFELIPVY----------LLLSMWG 180

Query: 61  GRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPALNFETSANQSYPVVL 116
           G+K +  ++   + ++  G   F LMGV+GIGLYGSN+P LNFETSANQSYP+ L
Sbjct: 181 GKKRL--YSATKFILYTAGGSIFLLMGVLGIGLYGSNEPTLNFETSANQSYPIAL 209

BLAST of CmoCh09G009640 vs. ExPASy Swiss-Prot
Match: Q09FZ6 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Platanus occidentalis OX=4403 GN=ndhD PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-13
Identity = 48/115 (41.74%), Postives = 64/115 (55.65%), Query Frame = 0

Query: 1   MYNGRIGSFFARDLLLFIIIRINSRISTSIDVRRKETVNLTIFYHVGVRINCRLSTSINV 60
           MY+G+IGSF +RDLLLF I+                 + L   Y         L  S+  
Sbjct: 121 MYSGQIGSFSSRDLLLFFIM---------------WELELIPVY---------LLLSMWG 180

Query: 61  GRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPALNFETSANQSYPVVL 116
           G+K +  ++   + ++  G   F LMGV+G+GLYGSN+P LNFETSANQSYPV L
Sbjct: 181 GKKRL--YSATKFILYTAGGSIFLLMGVLGMGLYGSNEPTLNFETSANQSYPVAL 209

BLAST of CmoCh09G009640 vs. ExPASy Swiss-Prot
Match: Q0ZIW8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhD PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-13
Identity = 48/115 (41.74%), Postives = 64/115 (55.65%), Query Frame = 0

Query: 1   MYNGRIGSFFARDLLLFIIIRINSRISTSIDVRRKETVNLTIFYHVGVRINCRLSTSINV 60
           MY+G+IGSF +RDLLLF I+                 + L   Y         L  S+  
Sbjct: 121 MYSGQIGSFSSRDLLLFFIM---------------WELELIPVY---------LLLSMWG 180

Query: 61  GRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPALNFETSANQSYPVVL 116
           G+K +  ++   + ++  G   F L+GV+GIGLYGSN+P LNFETSANQSYPV L
Sbjct: 181 GKKRL--YSATKFILYTAGGSIFLLLGVLGIGLYGSNEPTLNFETSANQSYPVAL 209

BLAST of CmoCh09G009640 vs. ExPASy Swiss-Prot
Match: B2LMP8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Guizotia abyssinica OX=4230 GN=ndhD PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 47/115 (40.87%), Postives = 63/115 (54.78%), Query Frame = 0

Query: 1   MYNGRIGSFFARDLLLFIIIRINSRISTSIDVRRKETVNLTIFYHVGVRINCRLSTSINV 60
           MY+G+IGSF +RDLLLF I+                 + L   Y         L  S+  
Sbjct: 121 MYSGQIGSFSSRDLLLFFIM---------------WELELIPVY---------LLLSMWG 180

Query: 61  GRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPALNFETSANQSYPVVL 116
           G+K +  ++   + ++  G   F LMGV+G+GLYGSN+P LNFETS NQSYPV L
Sbjct: 181 GKKRL--YSATKFILYTAGGSIFLLMGVLGVGLYGSNEPTLNFETSVNQSYPVAL 209

BLAST of CmoCh09G009640 vs. ExPASy Swiss-Prot
Match: Q1KXQ3 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Helianthus annuus OX=4232 GN=ndhD PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 47/115 (40.87%), Postives = 63/115 (54.78%), Query Frame = 0

Query: 1   MYNGRIGSFFARDLLLFIIIRINSRISTSIDVRRKETVNLTIFYHVGVRINCRLSTSINV 60
           MY+G+IGSF +RDLLLF I+                 + L   Y         L  S+  
Sbjct: 121 MYSGQIGSFSSRDLLLFFIM---------------WELELIPVY---------LLLSMWG 180

Query: 61  GRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPALNFETSANQSYPVVL 116
           G+K +  ++   + ++  G   F LMGV+G+GLYGSN+P LNFETS NQSYPV L
Sbjct: 181 GKKRL--YSATKFILYTAGGSIFLLMGVLGVGLYGSNEPTLNFETSVNQSYPVAL 209

BLAST of CmoCh09G009640 vs. ExPASy TrEMBL
Match: A0A6B9QIA5 (NADH-plastoquinone oxidoreductase subunit 4 OS=Corydalis trisecta OX=2682942 GN=ndhD PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.6e-19
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 39  NLTIFYHVGVRINCRLSTSINVGRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNK 98
           + T FYHVGVRIN  L TSI+VGRKE  V +YKV FVH  G   F LMGV+G+G YGSN+
Sbjct: 65  SFTFFYHVGVRINSCLPTSIHVGRKETFVLSYKVSFVHCGGGSVFRLMGVLGMGFYGSNE 124

Query: 99  PALNFETSANQSYPVVL 116
             L+FETSANQSYPV L
Sbjct: 125 ATLHFETSANQSYPVAL 141

BLAST of CmoCh09G009640 vs. ExPASy TrEMBL
Match: A0A7L8HZ51 (NADH-plastoquinone oxidoreductase subunit 4 OS=Hippeastrum rutilum OX=214526 GN=ndhD PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.2e-18
Identity = 58/115 (50.43%), Postives = 66/115 (57.39%), Query Frame = 0

Query: 1   MYNGRIGSFFARDLLLFIIIRINSRISTSIDVRRKETVNLTIFYHVGVRINCRLSTSINV 60
           MY+G+IG F +RDLLLF                         FYHVGVRIN  L T I+V
Sbjct: 122 MYSGQIGLFSSRDLLLF-------------------------FYHVGVRINSCLLTFIHV 181

Query: 61  GRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPALNFETSANQSYPVVL 116
           GRKE  V  YKVYFVH  G  F      +G+GLYGSN+P L+FE  ANQSYPV L
Sbjct: 182 GRKETFVLGYKVYFVHCGGFHFSLNRSFLGMGLYGSNEPTLDFERLANQSYPVTL 211

BLAST of CmoCh09G009640 vs. ExPASy TrEMBL
Match: A0A3P6DRL5 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC143T45662Z PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 54/115 (46.96%), Postives = 68/115 (59.13%), Query Frame = 0

Query: 1   MYNGRIGSFFARDLLLFIIIRINSRISTSIDVRRKETVNLTIFYHVGVRINCRLSTSINV 60
           MY+G+IGSF +RD+                            F+HVG+RIN RLS  I+V
Sbjct: 4   MYSGQIGSFSSRDIF--------------------------FFHHVGIRINSRLSFFIHV 63

Query: 61  GRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPALNFETSANQSYPVVL 116
           G KE  VF+YK+YF+H R   FF L+GV+GI LYGSN+P LN E   NQ+YPV L
Sbjct: 64  GWKETFVFSYKIYFIHCR-KFFFLLIGVLGISLYGSNEPTLNLELLGNQAYPVTL 91

BLAST of CmoCh09G009640 vs. ExPASy TrEMBL
Match: A0A1Y3BU67 (Putative NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr00c0703g0576951 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-15
Identity = 54/115 (46.96%), Postives = 67/115 (58.26%), Query Frame = 0

Query: 1   MYNGRIGSFFARDLLLFIIIRINSRISTSIDVRRKETVNLTIFYHVGVRINCRLSTSINV 60
           MY+G+IGSF +RDLLLF I+     I   +                          SI+V
Sbjct: 4   MYSGQIGSFSSRDLLLFFIMWELELIPVYL-------------------------LSIHV 63

Query: 61  GRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPALNFETSANQSYPVVL 116
           GRKE  + ++K+YFVH  G   FSL GV+G+GLYGSN+P LNFETS NQSYPV L
Sbjct: 64  GRKETSLLSHKIYFVH-GGGFHFSLNGVLGVGLYGSNEPTLNFETSVNQSYPVAL 92

BLAST of CmoCh09G009640 vs. ExPASy TrEMBL
Match: G7JFZ4 (NAD(P)H-quinone oxidoreductase chain 4 OS=Medicago truncatula OX=3880 GN=MTR_4g050950 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.5e-13
Identity = 47/115 (40.87%), Postives = 64/115 (55.65%), Query Frame = 0

Query: 1   MYNGRIGSFFARDLLLFIIIRINSRISTSIDVRRKETVNLTIFYHVGVRINCRLSTSINV 60
           MY+G+IG F +RD+                          T F+HVG+ IN RL T  +V
Sbjct: 122 MYSGQIGPFSSRDI-------------------------FTFFHHVGIGINSRLYTLSHV 181

Query: 61  GRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPALNFETSANQSYPVVL 116
           G K+  +++   + ++  G   F LMG++GIGLYGSN+P LNFET  NQSYPV L
Sbjct: 182 GGKKR-LYSATKFILYTAGGSVFLLMGILGIGLYGSNEPTLNFETLTNQSYPVAL 210

BLAST of CmoCh09G009640 vs. NCBI nr
Match: QHE65873.1 (NADH-plastoquinone oxidoreductase subunit 4 [Corydalis trisecta])

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-18
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 39  NLTIFYHVGVRINCRLSTSINVGRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNK 98
           + T FYHVGVRIN  L TSI+VGRKE  V +YKV FVH  G   F LMGV+G+G YGSN+
Sbjct: 65  SFTFFYHVGVRINSCLPTSIHVGRKETFVLSYKVSFVHCGGGSVFRLMGVLGMGFYGSNE 124

Query: 99  PALNFETSANQSYPVVL 116
             L+FETSANQSYPV L
Sbjct: 125 ATLHFETSANQSYPVAL 141

BLAST of CmoCh09G009640 vs. NCBI nr
Match: YP_010010482.1 (NADH-plastoquinone oxidoreductase subunit 4 [Hippeastrum rutilum] >QOE56828.1 NADH-plastoquinone oxidoreductase subunit 4 [Hippeastrum rutilum])

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-17
Identity = 58/115 (50.43%), Postives = 66/115 (57.39%), Query Frame = 0

Query: 1   MYNGRIGSFFARDLLLFIIIRINSRISTSIDVRRKETVNLTIFYHVGVRINCRLSTSINV 60
           MY+G+IG F +RDLLLF                         FYHVGVRIN  L T I+V
Sbjct: 122 MYSGQIGLFSSRDLLLF-------------------------FYHVGVRINSCLLTFIHV 181

Query: 61  GRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPALNFETSANQSYPVVL 116
           GRKE  V  YKVYFVH  G  F      +G+GLYGSN+P L+FE  ANQSYPV L
Sbjct: 182 GRKETFVLGYKVYFVHCGGFHFSLNRSFLGMGLYGSNEPTLDFERLANQSYPVTL 211

BLAST of CmoCh09G009640 vs. NCBI nr
Match: VDD26381.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-17
Identity = 54/115 (46.96%), Postives = 68/115 (59.13%), Query Frame = 0

Query: 1   MYNGRIGSFFARDLLLFIIIRINSRISTSIDVRRKETVNLTIFYHVGVRINCRLSTSINV 60
           MY+G+IGSF +RD+                            F+HVG+RIN RLS  I+V
Sbjct: 4   MYSGQIGSFSSRDIF--------------------------FFHHVGIRINSRLSFFIHV 63

Query: 61  GRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPALNFETSANQSYPVVL 116
           G KE  VF+YK+YF+H R   FF L+GV+GI LYGSN+P LN E   NQ+YPV L
Sbjct: 64  GWKETFVFSYKIYFIHCR-KFFFLLIGVLGISLYGSNEPTLNLELLGNQAYPVTL 91

BLAST of CmoCh09G009640 vs. NCBI nr
Match: KAG5631586.1 (hypothetical protein H5410_003303 [Solanum commersonii])

HSP 1 Score: 98.2 bits (243), Expect = 4.9e-17
Identity = 49/73 (67.12%), Postives = 56/73 (76.71%), Query Frame = 0

Query: 41  TIFYHVGVRINCRLSTSINVGRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPA 100
           T F+HVGVRIN  LSTS +VGR EM V +YK+YFVH  G  +F LMGV+G  LYGSN+P 
Sbjct: 13  TFFHHVGVRINSCLSTSSHVGRNEMSVLSYKIYFVHGEG-FYFLLMGVLGAALYGSNEPT 72

Query: 101 LNFETSANQSYPV 114
           LNFETS NQSY V
Sbjct: 73  LNFETSVNQSYLV 84

BLAST of CmoCh09G009640 vs. NCBI nr
Match: OTF84302.1 (putative NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit [Helianthus annuus])

HSP 1 Score: 91.7 bits (226), Expect = 4.6e-15
Identity = 54/115 (46.96%), Postives = 67/115 (58.26%), Query Frame = 0

Query: 1   MYNGRIGSFFARDLLLFIIIRINSRISTSIDVRRKETVNLTIFYHVGVRINCRLSTSINV 60
           MY+G+IGSF +RDLLLF I+     I   +                          SI+V
Sbjct: 4   MYSGQIGSFSSRDLLLFFIMWELELIPVYL-------------------------LSIHV 63

Query: 61  GRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPALNFETSANQSYPVVL 116
           GRKE  + ++K+YFVH  G   FSL GV+G+GLYGSN+P LNFETS NQSYPV L
Sbjct: 64  GRKETSLLSHKIYFVH-GGGFHFSLNGVLGVGLYGSNEPTLNFETSVNQSYPVAL 92

BLAST of CmoCh09G009640 vs. TAIR 10
Match: ATCG01050.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-11
Identity = 44/115 (38.26%), Postives = 61/115 (53.04%), Query Frame = 0

Query: 1   MYNGRIGSFFARDLLLFIIIRINSRISTSIDVRRKETVNLTIFYHVGVRINCRLSTSINV 60
           MY+G+IGSF +RDLLLF I+                 + L   Y         L  S+  
Sbjct: 127 MYSGQIGSFSSRDLLLFFIM---------------WELELIPVY---------LLLSMWG 186

Query: 61  GRKEMVVFNYKVYFVHPRGSIFFSLMGVMGIGLYGSNKPALNFETSANQSYPVVL 116
           G+K +  ++   + ++  GS  F L+GV+GI LYGSN+P LN E  AN+SYPV L
Sbjct: 187 GKKRL--YSATKFILYTAGSSIFLLIGVLGISLYGSNEPTLNLELLANKSYPVTL 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q4VZL82.6e-1341.74NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus OX=3659... [more]
Q09FZ67.6e-1341.74NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Platanus occidentalis O... [more]
Q0ZIW87.6e-1341.74NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera OX=29760... [more]
B2LMP81.3e-1240.87NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Guizotia abyssinica OX=... [more]
Q1KXQ31.3e-1240.87NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Helianthus annuus OX=42... [more]
Match NameE-valueIdentityDescription
A0A6B9QIA59.6e-1966.23NADH-plastoquinone oxidoreductase subunit 4 OS=Corydalis trisecta OX=2682942 GN=... [more]
A0A7L8HZ516.2e-1850.43NADH-plastoquinone oxidoreductase subunit 4 OS=Hippeastrum rutilum OX=214526 GN=... [more]
A0A3P6DRL51.1e-1746.96Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC143T45662Z PE=4 S... [more]
A0A1Y3BU672.2e-1546.96Putative NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit OS=Heliant... [more]
G7JFZ43.5e-1340.87NAD(P)H-quinone oxidoreductase chain 4 OS=Medicago truncatula OX=3880 GN=MTR_4g0... [more]
Match NameE-valueIdentityDescription
QHE65873.12.0e-1866.23NADH-plastoquinone oxidoreductase subunit 4 [Corydalis trisecta][more]
YP_010010482.11.3e-1750.43NADH-plastoquinone oxidoreductase subunit 4 [Hippeastrum rutilum] >QOE56828.1 NA... [more]
VDD26381.12.2e-1746.96unnamed protein product [Brassica rapa][more]
KAG5631586.14.9e-1767.12hypothetical protein H5410_003303 [Solanum commersonii][more]
OTF84302.14.6e-1546.96putative NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit [Helianthu... [more]
Match NameE-valueIdentityDescription
ATCG01050.14.3e-1138.26NADH-Ubiquinone/plastoquinone (complex I) protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G009640.1CmoCh09G009640.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009060 aerobic respiration
cellular_component GO:0009507 chloroplast
cellular_component GO:0016020 membrane
molecular_function GO:0003954 NADH dehydrogenase activity
molecular_function GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor