CmoCh09G009550 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G009550
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like
Location	Cmo_Chr09: 5029034 .. 5029948 (-)
RNA-Seq Expression	CmoCh09G009550
Synteny	CmoCh09G009550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATTTCTCTCAATCTTCTGCAACTTCATGGAAATCCATCACTACCCAAGTTCCCAAATTCGAATTGGCTCCGTCCGGCGGTTTATTTCCGAGCTCCGGCGAGGGCGACGGTGGTCATGTCGCAGATCACTCCGTCGTACTGGGCGGCGATAAATGAAGATATTGACGATCATCTCCGGCGGGTCATTATTGCGAAGGACCCACCGGAAGTATACGAGCCATTGAGTCATTTTGTCTTCTCCGCCCCACGAAATTCCGCTGCAGCAATGTGTATTGCTGCCTGCGAGCTCGTCGGCGGCCGCCGGGATCAAGCTATGGCGGCGGCTACCGCACTCCAGCTCATCTATGCAGCGACGTACACTCGGGAGTATCCTCCACTGACGGCGCGTGGGAGTTCAAACGCCGCCGTGGTTGACCGTGTTTATGGCCCAAACATCCAGCTGCTGACTGGTGTTGGAATAGCTCCGATTGGGTTTGAGATTCTAGCTGGGTCGTGTGACTTGAGCGAGAGCGGGTCGGAGCGGGTTCGCCGCGTGATGGCGGAAATGGCTCGGGCAATGGGGTCAGAGGGGTGGATTGGGGGACAATTCAAGGAATTAGAGGAGGTGACGGCGGCGGTGGAGACGGAGGAAGTTATCGAGATGACGGAAGGTGAGCTACACGCGCGTGGAGGCGCGTGTGGTGCAATATTGGGAGGTGGAAATGAAGAGGAAATAGAGAAGATGAGGAAATATGGAAGAATTGTTGGAATGGTGAAGGGATTGTCAAAGAAAGTGTTTGGAGGGAAAGAAAATGAGAGAAAAAGAGAGAAAATTAATGAGTTGAAGGCTTTGGCTTTCAAGGAATTGGAGGGTTTCAAAGGAGAAAAAGTGGATCAAATGTGTAATTTCTTTGATTTCGAGGGGCTTTAG

mRNA sequence

ATGGCGATTTCTCTCAATCTTCTGCAACTTCATGGAAATCCATCACTACCCAAGTTCCCAAATTCGAATTGGCTCCGTCCGGCGGTTTATTTCCGAGCTCCGGCGAGGGCGACGGTGGTCATGTCGCAGATCACTCCGTCGTACTGGGCGGCGATAAATGAAGATATTGACGATCATCTCCGGCGGGTCATTATTGCGAAGGACCCACCGGAAGTATACGAGCCATTGAGTCATTTTGTCTTCTCCGCCCCACGAAATTCCGCTGCAGCAATGTGTATTGCTGCCTGCGAGCTCGTCGGCGGCCGCCGGGATCAAGCTATGGCGGCGGCTACCGCACTCCAGCTCATCTATGCAGCGACGTACACTCGGGAGTATCCTCCACTGACGGCGCGTGGGAGTTCAAACGCCGCCGTGGTTGACCGTGTTTATGGCCCAAACATCCAGCTGCTGACTGGTGTTGGAATAGCTCCGATTGGGTTTGAGATTCTAGCTGGGTCGTGTGACTTGAGCGAGAGCGGGTCGGAGCGGGTTCGCCGCGTGATGGCGGAAATGGCTCGGGCAATGGGGTCAGAGGGGTGGATTGGGGGACAATTCAAGGAATTAGAGGAGGTGACGGCGGCGGTGGAGACGGAGGAAGTTATCGAGATGACGGAAGGTGAGCTACACGCGCGTGGAGGCGCGTGTGGTGCAATATTGGGAGGTGGAAATGAAGAGGAAATAGAGAAGATGAGGAAATATGGAAGAATTGTTGGAATGGTGAAGGGATTGTCAAAGAAAGTGTTTGGAGGGAAAGAAAATGAGAGAAAAAGAGAGAAAATTAATGAGTTGAAGGCTTTGGCTTTCAAGGAATTGGAGGGTTTCAAAGGAGAAAAAGTGGATCAAATGTGTAATTTCTTTGATTTCGAGGGGCTTTAG

Coding sequence (CDS)

ATGGCGATTTCTCTCAATCTTCTGCAACTTCATGGAAATCCATCACTACCCAAGTTCCCAAATTCGAATTGGCTCCGTCCGGCGGTTTATTTCCGAGCTCCGGCGAGGGCGACGGTGGTCATGTCGCAGATCACTCCGTCGTACTGGGCGGCGATAAATGAAGATATTGACGATCATCTCCGGCGGGTCATTATTGCGAAGGACCCACCGGAAGTATACGAGCCATTGAGTCATTTTGTCTTCTCCGCCCCACGAAATTCCGCTGCAGCAATGTGTATTGCTGCCTGCGAGCTCGTCGGCGGCCGCCGGGATCAAGCTATGGCGGCGGCTACCGCACTCCAGCTCATCTATGCAGCGACGTACACTCGGGAGTATCCTCCACTGACGGCGCGTGGGAGTTCAAACGCCGCCGTGGTTGACCGTGTTTATGGCCCAAACATCCAGCTGCTGACTGGTGTTGGAATAGCTCCGATTGGGTTTGAGATTCTAGCTGGGTCGTGTGACTTGAGCGAGAGCGGGTCGGAGCGGGTTCGCCGCGTGATGGCGGAAATGGCTCGGGCAATGGGGTCAGAGGGGTGGATTGGGGGACAATTCAAGGAATTAGAGGAGGTGACGGCGGCGGTGGAGACGGAGGAAGTTATCGAGATGACGGAAGGTGAGCTACACGCGCGTGGAGGCGCGTGTGGTGCAATATTGGGAGGTGGAAATGAAGAGGAAATAGAGAAGATGAGGAAATATGGAAGAATTGTTGGAATGGTGAAGGGATTGTCAAAGAAAGTGTTTGGAGGGAAAGAAAATGAGAGAAAAAGAGAGAAAATTAATGAGTTGAAGGCTTTGGCTTTCAAGGAATTGGAGGGTTTCAAAGGAGAAAAAGTGGATCAAATGTGTAATTTCTTTGATTTCGAGGGGCTTTAG

Protein sequence

MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAATYTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRVMAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEIEKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFDFEGL

Homology

[Close]

BLAST of CmoCh09G009550 vs. ExPASy Swiss-Prot
Match: Q39108 (Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGR PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-22
Identity = 90/321 (28.04%), Postives = 146/321 (45.48%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNS--NWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDD 60
           M  S + + L    SLP+ P++    L PA    + + A   ++    +YW  +  +I+ 
Sbjct: 1   MLFSGSAIPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQ 60

Query: 61  HLRRVIIAKDPPEVYEPLSHFVFS-APRNSAAAMCIAACELVGGRRDQAMAAATALQLIY 120
            L   I  K P  +YE + + V +   + +   MC+AACEL GG R  A   A AL++++
Sbjct: 61  KLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVH 120

Query: 121 AATYTREYPPL-----TARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSES 180
           AA+   +  P        RG  +      VYG  + +L G  + P+ F+ +         
Sbjct: 121 AASLIHDDLPCMDDDPVRRGKPSN---HTVYGSGMAILAGDALFPLAFQHIVSHTPPDLV 180

Query: 181 GSERVRRVMAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAIL 240
               + R++ E+AR +GS G   GQ+ +LE          V E   G +      CG +L
Sbjct: 181 PRATILRLITEIARTVGSTGMAAGQYVDLE--GGPFPLSFVQEKKFGAMGECSAVCGGLL 240

Query: 241 GGGNEEEIEKMRKYGRIVGMVKGL-------SKKVFGGKENERKREKINELKALAFKELE 300
           GG  E+E++ +R+YGR VGM+  +        KK + G   +   E   ELK  A KEL+
Sbjct: 241 GGATEDELQSLRRYGRAVGMLYQVVDDITEDKKKSYDGGAEKGMMEMAEELKEKAKKELQ 300

Query: 301 GFK-----GEKVDQMCNFFDF 302
            F      G+ +  +  F D+
Sbjct: 301 VFDNKYGGGDTLVPLYTFVDY 316

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BLAST of CmoCh09G009550 vs. ExPASy Swiss-Prot
Match: Q94ID7 (Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=3981 GN=GGPS PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-18
Identity = 67/216 (31.02%), Postives = 113/216 (52.31%), Query Frame = 0


Query: 47  SYWAAINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQA 106
           SY       I+  L   I  ++P +++E + + + +  +    A+C+AACELVGG    A
Sbjct: 81  SYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMA 140

Query: 107 MAAATALQLIYAATYTREYPPL-----TARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFE 166
           M AA A+++I+  +   +  P        RG     +   V+G ++ +L G  +    FE
Sbjct: 141 MPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHI---VFGEDVAVLAGDALLAFAFE 200

Query: 167 ILAGSCDLSESGSERVRRVMAEMARAMGSEGWIGGQFKEL-EEVTAAVETE--EVIEMTE 226
            +A S       S R+ R + E+A+A+G+EG + GQ  ++  E ++ V+ E  E I + +
Sbjct: 201 HIAVS--TLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHK 260

Query: 227 GELHARGG-ACGAILGGGNEEEIEKMRKYGRIVGMV 254
                 G    GAILGGG +EE+EK+RKY R +G++
Sbjct: 261 TAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLL 291

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BLAST of CmoCh09G009550 vs. ExPASy Swiss-Prot
Match: Q9ZU77 (Geranylgeranyl pyrophosphate synthase 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g18620 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-17
Identity = 61/211 (28.91%), Postives = 112/211 (53.08%), Query Frame = 0


Query: 51  AINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAA 110
           A+NE +D      +  ++P +++E + + + +  +     +CIAACELVGG    A+ AA
Sbjct: 65  AVNEALDS----AVSLREPIKIHEAIRYSLLARGKRVRPVLCIAACELVGGEESVALPAA 124

Query: 111 TALQLIYAATYTREYPPLTARGS--SNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCD 170
            A+++I+  +   +  P               +V+G ++ +L G  +    FE LA S  
Sbjct: 125 CAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFAFEHLATSTA 184

Query: 171 LSESGSERVRRVMAEMARAMGSEGWIGGQFKEL-----EEVTAAVETEEVIEMTE-GELH 230
           +S +   RV R + E+A+A+GS+G + GQ  +L     ++    +E  E I + +   L 
Sbjct: 185 VSPA---RVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHKTAVLL 244

Query: 231 ARGGACGAILGGGNEEEIEKMRKYGRIVGMV 254
                 GAI+GGG++EE+EK+R++ R +G++
Sbjct: 245 EAATVLGAIVGGGSDEEVEKLRRFARCIGLL 268

[Close]

BLAST of CmoCh09G009550 vs. ExPASy Swiss-Prot
Match: Q9SLG2 (Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana OX=3702 GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-17
Identity = 74/287 (25.78%), Postives = 137/287 (47.74%), Query Frame = 0


Query: 48  YWAAINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAM 107
           Y  +  E I+  L   I   +P  +++ + + + +  +     +C+AACELVGG    A+
Sbjct: 84  YMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAI 143

Query: 108 AAATALQLIYAATYTREYPPLTARGS--SNAAVVDRVYGPNIQLLTGVGIAPIGFEILAG 167
            AA A+++I+  +  ++  P               +V+G ++ +L+G  +  + FE L  
Sbjct: 144 QAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLT- 203

Query: 168 SCDLSESGSERVRRVMAEMARAMGSEGWIGGQFKE-----LEEVTAAVETEEVIEMTE-G 227
             D+S   S+++ R + E+A+++G++G + GQ K+     LE+    +E  E I + + G
Sbjct: 204 EADVS---SKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTG 263

Query: 228 ELHARGGACGAILGGGNEEEIEKMRKYGRIVGMV------------------KGLSKKVF 287
            L       GA++GGG E+EIEK+R + R +G++                  K   K   
Sbjct: 264 SLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKV 323

Query: 288 GGKEN-------ERKREKINELKALAFKELEGFKGEKVDQMCNFFDF 302
            GK         E+ +E + +LK  A + L+GF  +KV  +    +F
Sbjct: 324 AGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNF 366

[Close]

BLAST of CmoCh09G009550 vs. ExPASy Swiss-Prot
Match: P34802 (Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGPPS1 PE=1 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 2.7e-17
Identity = 60/215 (27.91%), Postives = 108/215 (50.23%), Query Frame = 0


Query: 47  SYWAAINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQA 106
           SY     E ++  L   +  ++P +++E + + + +  +     +CIAACELVGG    A
Sbjct: 78  SYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTA 137

Query: 107 MAAATALQLIYAATYTREYPPLTARGS--SNAAVVDRVYGPNIQLLTGVGIAPIGFEILA 166
           M AA A+++I+  +   +  P               +V+G ++ +L G  +    FE LA
Sbjct: 138 MPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLA 197

Query: 167 GSCDLSESGSERVRRVMAEMARAMGSEGWIGGQFKE-----LEEVTAAVETEEVIEMTE- 226
            +         RV R + E+A+A+G+EG + GQ  +     L+     +E  E I + + 
Sbjct: 198 SATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKT 257

Query: 227 GELHARGGACGAILGGGNEEEIEKMRKYGRIVGMV 254
             L       GAI+GGG+++EIE++RK+ R +G++
Sbjct: 258 AALLEASAVLGAIVGGGSDDEIERLRKFARCIGLL 292

[Close]

BLAST of CmoCh09G009550 vs. ExPASy TrEMBL
Match: A0A6J1IK44 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111475905 PE=4 SV=1)

HSP 1 Score: 566.6 bits (1459), Expect = 6.2e-158
Identity = 286/304 (94.08%), Postives = 292/304 (96.05%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAP RATVVMSQITPSYWAAINEDI++HL
Sbjct: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPMRATVVMSQITPSYWAAINEDIEEHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           RR+IIAKDPP VYEPL HFVFSAPRNSAAAMCIAACE VGG RDQAMAAATALQLIYAAT
Sbjct: 61  RRIIIAKDPPVVYEPLGHFVFSAPRNSAAAMCIAACEFVGGHRDQAMAAATALQLIYAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
           YTREYPPLTARGSSNAA+VDRVY PNIQLLTGVGIAPIGFEILAGSCDLSESGS+RVRRV
Sbjct: 121 YTREYPPLTARGSSNAAMVDRVYAPNIQLLTGVGIAPIGFEILAGSCDLSESGSDRVRRV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           M EMARAMGSEGWIGGQFKELEEVTAA E EEVIE TEGELHARGGACGAILG G+EEEI
Sbjct: 181 MGEMARAMGSEGWIGGQFKELEEVTAAAEAEEVIEKTEGELHARGGACGAILGSGSEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFD 300
           EKMRKYGRIVGMVKGLSKKVFGGKENERKREKI ELKALAFKELEGFKGEKVDQMCNFFD
Sbjct: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKIKELKALAFKELEGFKGEKVDQMCNFFD 300

Query: 301 FEGL 305
           FEGL
Sbjct: 301 FEGL 304

[Close]

BLAST of CmoCh09G009550 vs. ExPASy TrEMBL
Match: A0A0A0K8P9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G211090 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.5e-116
Identity = 226/301 (75.08%), Postives = 247/301 (82.06%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQL  N + PKF  +N L P  Y R P R+  VMSQITPSYWAAINEDI+DHL
Sbjct: 1   MAISLNLLQLQPNLARPKFFQTNSLPPMPYVRLPPRSAAVMSQITPSYWAAINEDIEDHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           RRVI  KDP  VYEPL HF+FSAPRNSA A+CIAACELVGG RDQAMAAATA+QLIYAAT
Sbjct: 61  RRVIPVKDPVAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAATAIQLIYAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
            T EYPPLTARG   A+VVDRVYG N+QL+TG GI P+GFEILA SCD SE GSERVRRV
Sbjct: 121 CTHEYPPLTARG-KRASVVDRVYGSNVQLMTGDGITPMGFEILAESCDWSERGSERVRRV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           M E+ARAMG+EGWIGGQF+ LEE       EEVIE TEG LHA GGACGAI+GGGNEEEI
Sbjct: 181 MVEVARAMGTEGWIGGQFRGLEE---EATVEEVIEKTEGGLHACGGACGAIMGGGNEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFD 300
           EKMRKYG++VG+VKGL++ VFGGKENERKREKI ELK LAFKELEGF GE V Q+  F D
Sbjct: 241 EKMRKYGKLVGIVKGLTQIVFGGKENERKREKIEELKVLAFKELEGFNGEMVPQIYGFLD 297

Query: 301 F 302
           F
Sbjct: 301 F 297

[Close]

BLAST of CmoCh09G009550 vs. ExPASy TrEMBL
Match: A0A5A7SLD5 (Heterodimeric geranylgeranyl pyrophosphate synthase small subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29549G00010 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 1.3e-115
Identity = 224/304 (73.68%), Postives = 251/304 (82.57%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQL  N + PKF  +N + PA Y R P R+TV MSQITPSYWAAINEDI+DHL
Sbjct: 1   MAISLNLLQLQPNLARPKFFQTNLVPPAPYVRPPPRSTVFMSQITPSYWAAINEDIEDHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           RRVI  KDP  VYEPL HF+ SAPRNSA+A+CIAACELVGG RDQAMAAATA+QLI+AAT
Sbjct: 61  RRVIPVKDPLAVYEPLGHFILSAPRNSASALCIAACELVGGHRDQAMAAATAIQLIHAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
            T EYPPLTA G + AAVV+RVY P+IQL+TG GIAP+GFEILA SCD SE GSERVRRV
Sbjct: 121 CTHEYPPLTASG-TRAAVVERVYRPSIQLMTGDGIAPMGFEILAESCDWSERGSERVRRV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           M E++RAMG+EGWIGGQF+ L+E       EEVIE  EG LHA GGACGAI+GGGNEEEI
Sbjct: 181 MVEVSRAMGTEGWIGGQFRGLDE---EATVEEVIEKREGGLHACGGACGAIMGGGNEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFD 300
           EKMRKYG++VGMVKGL+K VFGGKENE+KREKI ELK LAFKELEGF GE V ++  F D
Sbjct: 241 EKMRKYGKLVGMVKGLTKNVFGGKENEKKREKIEELKVLAFKELEGFNGEMVHEIYGFLD 300

Query: 301 FEGL 305
           F GL
Sbjct: 301 FVGL 300

[Close]

BLAST of CmoCh09G009550 vs. ExPASy TrEMBL
Match: A0A1S4DWU7 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC107990910 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 1.2e-92
Identity = 186/271 (68.63%), Postives = 216/271 (79.70%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQL  N + PKF  +N + PA Y R P R+TV MSQITPSYWAAINEDI+DHL
Sbjct: 1   MAISLNLLQLQPNLARPKFFQTNLVPPAPYVRPPPRSTVFMSQITPSYWAAINEDIEDHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           RRVI  KDP  VYEPL HF+ SAPRNSA+A+CIAACELVGG RDQAMAAATA+QLI+AAT
Sbjct: 61  RRVIPVKDPLAVYEPLGHFILSAPRNSASALCIAACELVGGHRDQAMAAATAIQLIHAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
            T EYPPLTA G + AAVV+RVY P+IQL+TG GIAP+GFEILA SCD SE GSERVRRV
Sbjct: 121 CTHEYPPLTASG-TRAAVVERVYKPSIQLMTGDGIAPMGFEILAESCDWSERGSERVRRV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           M E++RAMG+EGWIGGQF+ L+E       EEVIE  EG LHA GGACGAI+GGGNEEEI
Sbjct: 181 MVEVSRAMGTEGWIGGQFRGLDE---EATVEEVIEKREGGLHACGGACGAIMGGGNEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKRE 272
           EKMRKYG+++       ++ +  +  ER++E
Sbjct: 241 EKMRKYGKLI------EERRWRNRRQERRKE 261

[Close]

BLAST of CmoCh09G009550 vs. ExPASy TrEMBL
Match: A0A2N9F8D7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11152 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.3e-62
Identity = 137/298 (45.97%), Postives = 200/298 (67.11%), Query Frame = 0


Query: 9   QLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHLRRVIIAKD 68
           +L+GN +      S+ +RP++    P R+ ++      SYWA++N +I+ HL++ I  + 
Sbjct: 7   RLNGNQTFHILSRSSAVRPSL----PHRSMMITMSQNQSYWASVNSEIEAHLKQAIPLRP 66

Query: 69  PPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAATYTREYPPL 128
           P +V+EP+ H VF+AP+N+A A+C+AACELVGG RDQAMAAA+AL L++AA++T E+ PL
Sbjct: 67  PLQVFEPMHHLVFAAPQNTAPALCLAACELVGGHRDQAMAAASALHLMHAASFTHEHLPL 126

Query: 129 TAR-GSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRVMAEMARA 188
           T R    +  V+   YGPNI+LL G  I P GFE+LA S D +++ S+R+ RV  E+ RA
Sbjct: 127 TDRPRPKSRPVIHHAYGPNIELLLGDAIIPFGFELLARSDDPAQNNSDRILRVTIEITRA 186

Query: 189 MGSEGWIGGQFKEL-------EEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 248
           MGS+G + GQ+ EL       EE+      E+V +  EG LHA G ACGAILGGG+EEEI
Sbjct: 187 MGSQGMVEGQYYELECPQSDGEELCDVGWIEQVCKKKEGGLHACGAACGAILGGGSEEEI 246

Query: 249 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNF 299
           EK+R++G  VGM++G+      G++ +  +E + EL+ LA KELE FKG KV+ + +F
Sbjct: 247 EKLRRFGLYVGMIQGMLHG--AGRKEKGLKEVVEELRNLALKELEEFKGRKVEAISSF 298

[Close]

BLAST of CmoCh09G009550 vs. NCBI nr
Match: KAG6592047.1 (Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024925.1 Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 598.2 bits (1541), Expect = 4.0e-167
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL
Sbjct: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT
Sbjct: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
           YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV
Sbjct: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI
Sbjct: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFD 300
           EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFD
Sbjct: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFD 300

Query: 301 FEGL 305
           FEGL
Sbjct: 301 FEGL 304

[Close]

BLAST of CmoCh09G009550 vs. NCBI nr
Match: XP_023536167.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 572.4 bits (1474), Expect = 2.3e-159
Identity = 293/304 (96.38%), Postives = 295/304 (97.04%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL
Sbjct: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           RRVIIAKDPP VYEPL HFVFSAPRNSAAAMCIAACELVGG RDQAMAAATALQLIYAAT
Sbjct: 61  RRVIIAKDPPAVYEPLGHFVFSAPRNSAAAMCIAACELVGGHRDQAMAAATALQLIYAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
           YTREYPPLTARG SNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV
Sbjct: 121 YTREYPPLTARGISNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           M EMARAMGSEGWIGGQFKELEEVTAA   EEVIEMTEGELHARGGACGAILGGG+EEEI
Sbjct: 181 MVEMARAMGSEGWIGGQFKELEEVTAA---EEVIEMTEGELHARGGACGAILGGGSEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFD 300
           EKMRKYGRIVGMVKGLSKKVFGGKENERKREKI ELKALAFKELEGFKG+KVDQMCNFFD
Sbjct: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKIKELKALAFKELEGFKGQKVDQMCNFFD 300

Query: 301 FEGL 305
           FEGL
Sbjct: 301 FEGL 301

[Close]

BLAST of CmoCh09G009550 vs. NCBI nr
Match: XP_022975728.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 566.6 bits (1459), Expect = 1.3e-157
Identity = 286/304 (94.08%), Postives = 292/304 (96.05%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAP RATVVMSQITPSYWAAINEDI++HL
Sbjct: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPMRATVVMSQITPSYWAAINEDIEEHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           RR+IIAKDPP VYEPL HFVFSAPRNSAAAMCIAACE VGG RDQAMAAATALQLIYAAT
Sbjct: 61  RRIIIAKDPPVVYEPLGHFVFSAPRNSAAAMCIAACEFVGGHRDQAMAAATALQLIYAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
           YTREYPPLTARGSSNAA+VDRVY PNIQLLTGVGIAPIGFEILAGSCDLSESGS+RVRRV
Sbjct: 121 YTREYPPLTARGSSNAAMVDRVYAPNIQLLTGVGIAPIGFEILAGSCDLSESGSDRVRRV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           M EMARAMGSEGWIGGQFKELEEVTAA E EEVIE TEGELHARGGACGAILG G+EEEI
Sbjct: 181 MGEMARAMGSEGWIGGQFKELEEVTAAAEAEEVIEKTEGELHARGGACGAILGSGSEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFD 300
           EKMRKYGRIVGMVKGLSKKVFGGKENERKREKI ELKALAFKELEGFKGEKVDQMCNFFD
Sbjct: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKIKELKALAFKELEGFKGEKVDQMCNFFD 300

Query: 301 FEGL 305
           FEGL
Sbjct: 301 FEGL 304

[Close]

BLAST of CmoCh09G009550 vs. NCBI nr
Match: XP_038896497.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 465.3 bits (1196), Expect = 4.0e-127
Identity = 242/304 (79.61%), Postives = 262/304 (86.18%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQL  NP+ PKF   N +RPAVYFRAPAR+TVVMSQITPSYWA INEDI+DHL
Sbjct: 1   MAISLNLLQLQANPARPKFLKWNPVRPAVYFRAPARSTVVMSQITPSYWATINEDIEDHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           R+VI AKDPP V+EPL HF+FSAPRNSA A+CIAACELVGGRRD+AMAAATALQLI+AAT
Sbjct: 61  RQVIPAKDPPAVFEPLGHFIFSAPRNSAPALCIAACELVGGRRDKAMAAATALQLIHAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
           YTREYPPLTAR  S AAVVDR+YG NIQLLTG  IAPI FEILAGSCD SESGSERV+ V
Sbjct: 121 YTREYPPLTAREISRAAVVDRIYGANIQLLTGDAIAPIVFEILAGSCDWSESGSERVQHV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           M EMARAMG+EGW+GGQF+ LEE   A   EEV E TEG LHA GGACGAILGGG+EEEI
Sbjct: 181 MVEMARAMGTEGWVGGQFRGLEEEATA---EEVSEKTEGGLHACGGACGAILGGGSEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFD 300
           EKMRKYG++VGMVKGLSK VFGGKENERKREKI E K LAFK LEGFKGEKV ++  F D
Sbjct: 241 EKMRKYGKLVGMVKGLSKNVFGGKENERKREKIEEFKVLAFKVLEGFKGEKVHEIYGFLD 300

Query: 301 FEGL 305
           FEGL
Sbjct: 301 FEGL 301

[Close]

BLAST of CmoCh09G009550 vs. NCBI nr
Match: XP_004139865.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Cucumis sativus] >KGN44166.1 hypothetical protein Csa_016347 [Cucumis sativus])

HSP 1 Score: 429.1 bits (1102), Expect = 3.2e-116
Identity = 226/301 (75.08%), Postives = 247/301 (82.06%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQL  N + PKF  +N L P  Y R P R+  VMSQITPSYWAAINEDI+DHL
Sbjct: 1   MAISLNLLQLQPNLARPKFFQTNSLPPMPYVRLPPRSAAVMSQITPSYWAAINEDIEDHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           RRVI  KDP  VYEPL HF+FSAPRNSA A+CIAACELVGG RDQAMAAATA+QLIYAAT
Sbjct: 61  RRVIPVKDPVAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAATAIQLIYAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
            T EYPPLTARG   A+VVDRVYG N+QL+TG GI P+GFEILA SCD SE GSERVRRV
Sbjct: 121 CTHEYPPLTARG-KRASVVDRVYGSNVQLMTGDGITPMGFEILAESCDWSERGSERVRRV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           M E+ARAMG+EGWIGGQF+ LEE       EEVIE TEG LHA GGACGAI+GGGNEEEI
Sbjct: 181 MVEVARAMGTEGWIGGQFRGLEE---EATVEEVIEKTEGGLHACGGACGAIMGGGNEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFD 300
           EKMRKYG++VG+VKGL++ VFGGKENERKREKI ELK LAFKELEGF GE V Q+  F D
Sbjct: 241 EKMRKYGKLVGIVKGLTQIVFGGKENERKREKIEELKVLAFKELEGFNGEMVPQIYGFLD 297

Query: 301 F 302
           F
Sbjct: 301 F 297

[Close]

BLAST of CmoCh09G009550 vs. TAIR 10
Match: AT4G38460.1 (geranylgeranyl reductase )

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-23
Identity = 90/321 (28.04%), Postives = 146/321 (45.48%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNS--NWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDD 60
           M  S + + L    SLP+ P++    L PA    + + A   ++    +YW  +  +I+ 
Sbjct: 1   MLFSGSAIPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQ 60

Query: 61  HLRRVIIAKDPPEVYEPLSHFVFS-APRNSAAAMCIAACELVGGRRDQAMAAATALQLIY 120
            L   I  K P  +YE + + V +   + +   MC+AACEL GG R  A   A AL++++
Sbjct: 61  KLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVH 120

Query: 121 AATYTREYPPL-----TARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSES 180
           AA+   +  P        RG  +      VYG  + +L G  + P+ F+ +         
Sbjct: 121 AASLIHDDLPCMDDDPVRRGKPSN---HTVYGSGMAILAGDALFPLAFQHIVSHTPPDLV 180

Query: 181 GSERVRRVMAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAIL 240
               + R++ E+AR +GS G   GQ+ +LE          V E   G +      CG +L
Sbjct: 181 PRATILRLITEIARTVGSTGMAAGQYVDLE--GGPFPLSFVQEKKFGAMGECSAVCGGLL 240

Query: 241 GGGNEEEIEKMRKYGRIVGMVKGL-------SKKVFGGKENERKREKINELKALAFKELE 300
           GG  E+E++ +R+YGR VGM+  +        KK + G   +   E   ELK  A KEL+
Sbjct: 241 GGATEDELQSLRRYGRAVGMLYQVVDDITEDKKKSYDGGAEKGMMEMAEELKEKAKKELQ 300

Query: 301 GFK-----GEKVDQMCNFFDF 302
            F      G+ +  +  F D+
Sbjct: 301 VFDNKYGGGDTLVPLYTFVDY 316

[Close]

BLAST of CmoCh09G009550 vs. TAIR 10
Match: AT2G18620.1 (Terpenoid synthases superfamily protein )

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-18
Identity = 61/211 (28.91%), Postives = 112/211 (53.08%), Query Frame = 0


Query: 51  AINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAA 110
           A+NE +D      +  ++P +++E + + + +  +     +CIAACELVGG    A+ AA
Sbjct: 65  AVNEALDS----AVSLREPIKIHEAIRYSLLARGKRVRPVLCIAACELVGGEESVALPAA 124

Query: 111 TALQLIYAATYTREYPPLTARGS--SNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCD 170
            A+++I+  +   +  P               +V+G ++ +L G  +    FE LA S  
Sbjct: 125 CAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFAFEHLATSTA 184

Query: 171 LSESGSERVRRVMAEMARAMGSEGWIGGQFKEL-----EEVTAAVETEEVIEMTE-GELH 230
           +S +   RV R + E+A+A+GS+G + GQ  +L     ++    +E  E I + +   L 
Sbjct: 185 VSPA---RVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHKTAVLL 244

Query: 231 ARGGACGAILGGGNEEEIEKMRKYGRIVGMV 254
                 GAI+GGG++EE+EK+R++ R +G++
Sbjct: 245 EAATVLGAIVGGGSDEEVEKLRRFARCIGLL 268

[Close]

BLAST of CmoCh09G009550 vs. TAIR 10
Match: AT2G18640.1 (geranylgeranyl pyrophosphate synthase 4 )

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-18
Identity = 74/287 (25.78%), Postives = 137/287 (47.74%), Query Frame = 0


Query: 48  YWAAINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAM 107
           Y  +  E I+  L   I   +P  +++ + + + +  +     +C+AACELVGG    A+
Sbjct: 84  YMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAI 143

Query: 108 AAATALQLIYAATYTREYPPLTARGS--SNAAVVDRVYGPNIQLLTGVGIAPIGFEILAG 167
            AA A+++I+  +  ++  P               +V+G ++ +L+G  +  + FE L  
Sbjct: 144 QAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLT- 203

Query: 168 SCDLSESGSERVRRVMAEMARAMGSEGWIGGQFKE-----LEEVTAAVETEEVIEMTE-G 227
             D+S   S+++ R + E+A+++G++G + GQ K+     LE+    +E  E I + + G
Sbjct: 204 EADVS---SKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTG 263

Query: 228 ELHARGGACGAILGGGNEEEIEKMRKYGRIVGMV------------------KGLSKKVF 287
            L       GA++GGG E+EIEK+R + R +G++                  K   K   
Sbjct: 264 SLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKV 323

Query: 288 GGKEN-------ERKREKINELKALAFKELEGFKGEKVDQMCNFFDF 302
            GK         E+ +E + +LK  A + L+GF  +KV  +    +F
Sbjct: 324 AGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNF 366

[Close]

BLAST of CmoCh09G009550 vs. TAIR 10
Match: AT4G36810.1 (geranylgeranyl pyrophosphate synthase 1 )

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-18
Identity = 60/215 (27.91%), Postives = 108/215 (50.23%), Query Frame = 0


Query: 47  SYWAAINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQA 106
           SY     E ++  L   +  ++P +++E + + + +  +     +CIAACELVGG    A
Sbjct: 78  SYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTA 137

Query: 107 MAAATALQLIYAATYTREYPPLTARGS--SNAAVVDRVYGPNIQLLTGVGIAPIGFEILA 166
           M AA A+++I+  +   +  P               +V+G ++ +L G  +    FE LA
Sbjct: 138 MPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLA 197

Query: 167 GSCDLSESGSERVRRVMAEMARAMGSEGWIGGQFKE-----LEEVTAAVETEEVIEMTE- 226
            +         RV R + E+A+A+G+EG + GQ  +     L+     +E  E I + + 
Sbjct: 198 SATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKT 257

Query: 227 GELHARGGACGAILGGGNEEEIEKMRKYGRIVGMV 254
             L       GAI+GGG+++EIE++RK+ R +G++
Sbjct: 258 AALLEASAVLGAIVGGGSDDEIERLRKFARCIGLL 292

[Close]

BLAST of CmoCh09G009550 vs. TAIR 10
Match: AT2G23800.1 (geranylgeranyl pyrophosphate synthase 2 )

HSP 1 Score: 90.5 bits (223), Expect = 2.5e-18
Identity = 59/214 (27.57%), Postives = 111/214 (51.87%), Query Frame = 0


Query: 48  YWAAINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAM 107
           Y  +  E ++  L   I   +P +++E + + + +A +     +C+A+CELVGG+ + AM
Sbjct: 88  YMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAM 147

Query: 108 AAATALQLIYAATYTREYPPLTARGS--SNAAVVDRVYGPNIQLLTGVGIAPIGFEILAG 167
            AA A+++I+  +  ++  P               +VYG  + +L+G  +  + FE +  
Sbjct: 148 PAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMT- 207

Query: 168 SCDLSESGSERVRRVMAEMARAMGSEGWIGGQFKE-----LEEVTAAVETEEVIEMTE-G 227
               +E  SER+   + E+AR++G+ G + GQ  +     L+     +E  E I + +  
Sbjct: 208 ---TAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTA 267

Query: 228 ELHARGGACGAILGGGNEEEIEKMRKYGRIVGMV 254
            L       GAI+GGG++EEIE +RK+ R +G++
Sbjct: 268 VLLETAAVLGAIIGGGSDEEIESVRKFARCIGLL 297

The following BLAST results are available for this feature:

BLAST of CmoCh09G009550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39108	1.6e-22	28.04	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
Q94ID7	1.1e-18	31.02	Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=39...	[more]
Q9ZU77	1.6e-17	28.91	Geranylgeranyl pyrophosphate synthase 7, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9SLG2	2.1e-17	25.78	Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana OX=3702 GN=GGPP4...	[more]
P34802	2.7e-17	27.91	Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplast...	[more]

BLAST of CmoCh09G009550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IK44	6.2e-158	94.08	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
A0A0A0K8P9	1.5e-116	75.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G211090 PE=4 SV=1	[more]
A0A5A7SLD5	1.3e-115	73.68	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit OS=Cucumis mel...	[more]
A0A1S4DWU7	1.2e-92	68.63	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
A0A2N9F8D7	1.3e-62	45.97	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11152 PE=3 SV=1	[more]

BLAST of CmoCh09G009550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592047.1	4.0e-167	100.00	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
XP_023536167.1	2.3e-159	96.38	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
XP_022975728.1	1.3e-157	94.08	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
XP_038896497.1	4.0e-127	79.61	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
XP_004139865.1	3.2e-116	75.08	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]

BLAST of CmoCh09G009550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38460.1	1.2e-23	28.04	geranylgeranyl reductase	[more]
AT2G18620.1	1.1e-18	28.91	Terpenoid synthases superfamily protein	[more]
AT2G18640.1	1.5e-18	25.78	geranylgeranyl pyrophosphate synthase 4	[more]
AT4G36810.1	1.9e-18	27.91	geranylgeranyl pyrophosphate synthase 1	[more]
AT2G23800.1	2.5e-18	27.57	geranylgeranyl pyrophosphate synthase 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10	Farnesyl Diphosphate Synthase	coord: 40..303 e-value: 1.9E-40 score: 140.6
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 47..252
None	No IPR available	PANTHER	PTHR43281:SF6	HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC-LIKE	coord: 9..299
None	No IPR available	PANTHER	PTHR43281	FARNESYL DIPHOSPHATE SYNTHASE	coord: 9..299

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G009550.1	CmoCh09G009550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004659	prenyltransferase activity