CmoCh09G009160 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G009160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Histone H2A
Location	Cmo_Chr09: 4785535 .. 4786780 (+)
RNA-Seq Expression	CmoCh09G009160
Synteny	CmoCh09G009160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTATTGCTCTCTCTCTCGCGACCTCGCCGGAAAATTGCTTTCCATTTTCTCTTCAATTCTTTCGTTCTTCTTCTCCGTCCAACAGATCTCAACTAATGGCAGGTAGAGGCAAAACCCTAGGATCCGGTGCCGCTAAAAAGGCCACCTCAAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCCGAACGTGTTGGTGCCGGTGCTCCGGTCTACCTCGCTGCCGTCCTTGAATACCTCGCCGCTGAGGTATGATATTTTGGAACTTTTTCCTTTTCTTTTGGTTTCTATCGCTGTGTGGGTTTTGTGAAATTGAGCACGCTGTATGGATCTAGGGTTTCGAATTTTCCCCCAATTCGTGTCCTCTTTCTCAATTTCTTCATAGGCGTTTGAGAATTAGATTGATTTTCTTGCTTCTGAGATTAACTCGAAGGATTATTGATGTTTAGGTTTTGGAGCTCGCTGGAAACGCTGCTAGAGATAACAAGAAAACGCGTATTGTTCCTCGTCACATTCAGCTCGCTGTACGTAACGACGAGGAGCTAAGCAAGCTTTTGGGCGATGTGACTATTGCTAATGGCGGTGTTATGCCCAACATTCACAATCTGCTTCTGCCCAAGAAAACAGGGACTTCATCTAAGAACGCTGGTGGTGATGATGAACCCTAAATTTGTTTGTAGTAGGAACAGATGAACTGAATCATTGAATGCTCTGATGAAAAATTTGGCTCCGGTCATGACAGTGCTCTCTCTTACTCTGTTAGATTTTTCAATTTCCCCCCTTCTTTTGACATTGTTTTTCTTAGATTACGGATCTTTGCTTATGAAATTTGTAACAGTTCAAGGAGTAGTGCTAGAATTTCACTAGTGTTGTGAATATCATCATCATCATCTATTAATATCACCTCCTACTTGTTCTTCATACATGATCATGGAGTCTTAAACTTCGGTTGCCATATTTAGTGTAGAACCCATCTTTAATATTGAGCTTTTGGGGACTCTCACGACATCAAAAAGGAAGATAGAAATGTTTAACTGATAATCTTACACAATCTATATATACAAACTATGGTGAATAATGCTCCAACTGCCAAAAATTTCAAAACTAGATTTTTTTTTTACAGAAGAATCAACAAAGGTGAAAAACGTTAAGAATTCTAAGTGTGCTCTGGGCACATTGGCAATTCATGGAGCTTCTTCATATTGCTAA

mRNA sequence

ATTTATTGCTCTCTCTCTCGCGACCTCGCCGGAAAATTGCTTTCCATTTTCTCTTCAATTCTTTCGTTCTTCTTCTCCGTCCAACAGATCTCAACTAATGGCAGGTAGAGGCAAAACCCTAGGATCCGGTGCCGCTAAAAAGGCCACCTCAAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCCGAACGTGTTGGTGCCGGTGCTCCGGTCTACCTCGCTGCCGTCCTTGAATACCTCGCCGCTGAGGTTTTGGAGCTCGCTGGAAACGCTGCTAGAGATAACAAGAAAACGCGTATTGTTCCTCGTCACATTCAGCTCGCTGTACGTAACGACGAGGAGCTAAGCAAGCTTTTGGGCGATGTGACTATTGCTAATGGCGGTGTTATGCCCAACATTCACAATCTGCTTCTGCCCAAGAAAACAGGGACTTCATCTAAGAACGCTGGTGAAGAATCAACAAAGGTGAAAAACGTTAAGAATTCTAAGTGTGCTCTGGGCACATTGGCAATTCATGGAGCTTCTTCATATTGCTAA

Coding sequence (CDS)

ATGGCAGGTAGAGGCAAAACCCTAGGATCCGGTGCCGCTAAAAAGGCCACCTCAAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCCGAACGTGTTGGTGCCGGTGCTCCGGTCTACCTCGCTGCCGTCCTTGAATACCTCGCCGCTGAGGTTTTGGAGCTCGCTGGAAACGCTGCTAGAGATAACAAGAAAACGCGTATTGTTCCTCGTCACATTCAGCTCGCTGTACGTAACGACGAGGAGCTAAGCAAGCTTTTGGGCGATGTGACTATTGCTAATGGCGGTGTTATGCCCAACATTCACAATCTGCTTCTGCCCAAGAAAACAGGGACTTCATCTAAGAACGCTGGTGAAGAATCAACAAAGGTGAAAAACGTTAAGAATTCTAAGTGTGCTCTGGGCACATTGGCAATTCATGGAGCTTCTTCATATTGCTAA

Protein sequence

MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKNAGEESTKVKNVKNSKCALGTLAIHGASSYC

Homology

[Close]

BLAST of CmoCh09G009160 vs. ExPASy Swiss-Prot
Match: Q9C681 (Probable histone H2A.1 OS=Arabidopsis thaliana OX=3702 GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.1e-60
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG+AKKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGEE 133
           KTG S  +A ++
Sbjct: 121 KTGASKPSAEDD 132

[Close]

BLAST of CmoCh09G009160 vs. ExPASy Swiss-Prot
Match: Q9LD28 (Histone H2A.6 OS=Arabidopsis thaliana OX=3702 GN=RAT5 PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 8.7e-60
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G S
Sbjct: 121 KAGAS 125

[Close]

BLAST of CmoCh09G009160 vs. ExPASy Swiss-Prot
Match: O81826 (Probable histone H2A.3 OS=Arabidopsis thaliana OX=3702 GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.5e-59
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G+S
Sbjct: 121 KAGSS 125

[Close]

BLAST of CmoCh09G009160 vs. ExPASy Swiss-Prot
Match: Q9LHQ5 (Probable histone H2A.2 OS=Arabidopsis thaliana OX=3702 GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.1e-58
Identity = 120/132 (90.91%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG AKK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120

Query: 121 KTGTSSKNAGEE 133
           K G S  +A E+
Sbjct: 121 KAGASKPSADED 132

[Close]

BLAST of CmoCh09G009160 vs. ExPASy Swiss-Prot
Match: A2YVE5 (Probable histone H2A.3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.1e-58
Identity = 120/132 (90.91%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GS AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGEE 133
           K G+S+K A  +
Sbjct: 121 KAGSSAKAAAAD 132

[Close]

BLAST of CmoCh09G009160 vs. ExPASy TrEMBL
Match: A0A6J1IHB7 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111476948 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-61
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAG 131
           KTGTSSKNAG
Sbjct: 121 KTGTSSKNAG 130

[Close]

BLAST of CmoCh09G009160 vs. ExPASy TrEMBL
Match: A0A6J1FA07 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111443457 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-61
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAG 131
           KTGTSSKNAG
Sbjct: 121 KTGTSSKNAG 130

[Close]

BLAST of CmoCh09G009160 vs. ExPASy TrEMBL
Match: A0A5A7TUA9 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00010 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-61
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAG 131
           KTGTSSKNAG
Sbjct: 121 KTGTSSKNAG 130

[Close]

BLAST of CmoCh09G009160 vs. ExPASy TrEMBL
Match: A0A0A0LD22 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_3G408540 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-61
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAG 131
           KTGTSSKNAG
Sbjct: 121 KTGTSSKNAG 130

[Close]

BLAST of CmoCh09G009160 vs. ExPASy TrEMBL
Match: A0A6J1CC40 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111010313 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-61
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAG 131
           KTGTSSKNAG
Sbjct: 121 KTGTSSKNAG 130

[Close]

BLAST of CmoCh09G009160 vs. NCBI nr
Match: XP_004151965.1 (histone H2A.6 [Cucumis sativus] >XP_008454570.1 PREDICTED: histone H2A.6 [Cucumis melo] >XP_022139360.1 histone H2A.6-like [Momordica charantia] >XP_022937039.1 histone H2A.6-like [Cucurbita moschata] >XP_022941439.1 histone H2A.6-like [Cucurbita moschata] >XP_022976601.1 histone H2A.6-like [Cucurbita maxima] >XP_022981666.1 histone H2A.6-like [Cucurbita maxima] >XP_023521617.1 histone H2A.6-like [Cucurbita pepo subsp. pepo] >XP_023535142.1 histone H2A.6-like [Cucurbita pepo subsp. pepo] >XP_038896809.1 histone H2A.6 [Benincasa hispida] >KAA0046438.1 putative histone H2A.1 [Cucumis melo var. makuwa] >KAG6592014.1 putative histone H2A.1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015223.1 putative histone H2A.1 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6607826.1 putative histone H2A.1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024889.1 putative histone H2A.1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.4 bits (625), Expect = 3.4e-61
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAG 131
           KTGTSSKNAG
Sbjct: 121 KTGTSSKNAG 130

[Close]

BLAST of CmoCh09G009160 vs. NCBI nr
Match: XP_028761725.1 (histone H2A.6 [Prosopis alba])

HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAG 131
           KTGTSSK AG
Sbjct: 121 KTGTSSKGAG 130

[Close]

BLAST of CmoCh09G009160 vs. NCBI nr
Match: XP_015953899.1 (probable histone H2A.1 [Arachis duranensis] >XP_016188669.1 probable histone H2A.1 [Arachis ipaensis] >XP_016188674.1 probable histone H2A.1 [Arachis ipaensis] >XP_025643749.1 probable histone H2A.1 [Arachis hypogaea] >XP_025643752.1 probable histone H2A.1 [Arachis hypogaea] >XP_025687940.1 probable histone H2A.1 [Arachis hypogaea] >QHO00573.1 putative histone H2A [Arachis hypogaea] >QHO00577.1 putative histone H2A [Arachis hypogaea] >RYR21224.1 hypothetical protein Ahy_B03g066509 [Arachis hypogaea] >RYR68439.1 hypothetical protein Ahy_A03g014941 [Arachis hypogaea])

HSP 1 Score: 241.9 bits (616), Expect = 3.7e-60
Identity = 128/134 (95.52%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGNAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGEEST 135
           KTGTSSK AG++ +
Sbjct: 121 KTGTSSKAAGDDDS 134

[Close]

BLAST of CmoCh09G009160 vs. NCBI nr
Match: KAF7822852.1 (histone H2A.6-like [Senna tora])

HSP 1 Score: 241.9 bits (616), Expect = 3.7e-60
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGA+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAG 131
           KTGTSSK AG
Sbjct: 121 KTGTSSKGAG 130

[Close]

BLAST of CmoCh09G009160 vs. NCBI nr
Match: PON55943.1 (Histone H2A [Trema orientale] >PON61412.1 Histone H2A [Parasponia andersonii])

HSP 1 Score: 241.1 bits (614), Expect = 6.4e-60
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAG 131
           KTGTSSK +G
Sbjct: 121 KTGTSSKASG 130

[Close]

BLAST of CmoCh09G009160 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 231.9 bits (590), Expect = 3.6e-61
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG+AKKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGEE 133
           KTG S  +A ++
Sbjct: 121 KTGASKPSAEDD 132

[Close]

BLAST of CmoCh09G009160 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein )

HSP 1 Score: 231.1 bits (588), Expect = 6.2e-61
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G S
Sbjct: 121 KAGAS 125

[Close]

BLAST of CmoCh09G009160 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 229.6 bits (584), Expect = 1.8e-60
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G+S
Sbjct: 121 KAGSS 125

[Close]

BLAST of CmoCh09G009160 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 229.6 bits (584), Expect = 1.8e-60
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G+S
Sbjct: 121 KAGSS 125

[Close]

BLAST of CmoCh09G009160 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 226.5 bits (576), Expect = 1.5e-59
Identity = 120/132 (90.91%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG AKK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120

Query: 121 KTGTSSKNAGEE 133
           K G S  +A E+
Sbjct: 121 KAGASKPSADED 132

The following BLAST results are available for this feature:

BLAST of CmoCh09G009160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C681	5.1e-60	92.42	Probable histone H2A.1 OS=Arabidopsis thaliana OX=3702 GN=At1g51060 PE=1 SV=1	[more]
Q9LD28	8.7e-60	97.60	Histone H2A.6 OS=Arabidopsis thaliana OX=3702 GN=RAT5 PE=1 SV=1	[more]
O81826	2.5e-59	96.80	Probable histone H2A.3 OS=Arabidopsis thaliana OX=3702 GN=At4g27230 PE=1 SV=1	[more]
Q9LHQ5	2.1e-58	90.91	Probable histone H2A.2 OS=Arabidopsis thaliana OX=3702 GN=At3g20670 PE=1 SV=1	[more]
A2YVE5	2.1e-58	90.91	Probable histone H2A.3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028288 PE=3...	[more]

BLAST of CmoCh09G009160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IHB7	1.6e-61	100.00	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111476948 PE=3 SV=1	[more]
A0A6J1FA07	1.6e-61	100.00	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111443457 PE=3 SV=1	[more]
A0A5A7TUA9	1.6e-61	100.00	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00010 PE...	[more]
A0A0A0LD22	1.6e-61	100.00	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_3G408540 PE=3 SV=1	[more]
A0A6J1CC40	1.6e-61	100.00	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111010313 PE=3 SV=1	[more]

BLAST of CmoCh09G009160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151965.1	3.4e-61	100.00	histone H2A.6 [Cucumis sativus] >XP_008454570.1 PREDICTED: histone H2A.6 [Cucumi...	[more]
XP_028761725.1	1.7e-60	99.23	histone H2A.6 [Prosopis alba]	[more]
XP_015953899.1	3.7e-60	95.52	probable histone H2A.1 [Arachis duranensis] >XP_016188669.1 probable histone H2A...	[more]
KAF7822852.1	3.7e-60	98.46	histone H2A.6-like [Senna tora]	[more]
PON55943.1	6.4e-60	98.46	Histone H2A [Trema orientale] >PON61412.1 Histone H2A [Parasponia andersonii]	[more]

BLAST of CmoCh09G009160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51060.1	3.6e-61	92.42	histone H2A 10	[more]
AT5G54640.1	6.2e-61	97.60	Histone superfamily protein	[more]
AT4G27230.1	1.8e-60	96.80	histone H2A 2	[more]
AT4G27230.2	1.8e-60	96.80	histone H2A 2	[more]
AT3G20670.1	1.5e-59	90.91	histone H2A 13	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 73..87 score: 78.86 coord: 59..72 score: 89.46 coord: 44..59 score: 90.36 coord: 101..119 score: 66.52 coord: 15..37 score: 72.51
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 4..124 e-value: 7.4E-77 score: 271.3
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 9..121 e-value: 1.97827E-68 score: 201.024
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 13..90 e-value: 3.3E-14 score: 53.4
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 93..127 e-value: 7.2E-19 score: 67.3
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..130 e-value: 1.2E-64 score: 217.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 9..125
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..132
None	No IPR available	PANTHER	PTHR23430:SF286	HISTONE H2A.6	coord: 2..132
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 23..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G009160.1	CmoCh09G009160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity