CmoCh09G009080 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G009080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	glycine-rich RNA-binding protein 4, mitochondrial
Location	Cmo_Chr09: 4754143 .. 4756754 (+)
RNA-Seq Expression	CmoCh09G009080
Synteny	CmoCh09G009080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTCCTGTCTAGATTTTTCTTCCCATTCTAGAAAGGGTTTAGTAGCTTAAACCCCAAGGCCATGGCTCTCAGATCGGCGGCGGCGGCGGCACCTCGGAGTTTGAGACGGCTCATTACAGGTACTTCAGCTCGTACTCTACCGATATTCTTGCAGGCTATTCATGATTGCGAGAAACCGACGCCGCCCAACACGAATGCCTTTGTTTCTGGCCGGCTGTTCTCCAGTGCTTCAACTTCCAGTTTTATTCCTCCGCCGCTTCCTCCGTCGGCTCAGCAGCGTGAGCAGCCTGAGCCTAGTACTAACCTTTTCGTCTCCGGTAACTCATTCTTTCTTAATCTAGTTGCCTTTCGTTTATTTGCTTTGGAAACCATTAATTTGTCGCGTTTATGCGTTTTGTTAATCGTTTCATTTCTAGTCGTGACTCTGCTAATGATATTGTGTTTTATGGTTTCATTCCCGCCGATTTTTTTTTTCTATTCGGCGTTGGTCGGGAATTCTATTTTTGATGTTGTTCTTTTGTCGTCTTTCAGGCCTCAGTAAACGCACTACTACTGAAAAACTTAATGAAGCCTTTGCAAAGTTTGGGGAAGTTGTTCATGGTCTGTTCTTTGTCTTTCCTTATGTTTGATTGGTGCTTTAGTCTGAAGAATTGCCATTTTTTACCTTTGGTTTTCCCTTCTGTTTACAGCAAGAGTCGTGACTGATCGAGTGACTGGATATTCTAAGGGATTCGGTTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTATTAGAATATGCCTTCATTGTGTTAATCAACATATCACACAAATAAATACAAGATTCCTGAATATGTTGTGTATTGTAATCCACAAATGCGTACAAGATAGCATTGTAGTATTTGATTGGCAGGCTGCATAGAGAACATATTACATCTTACAGCACTCTGATTTGATTATGATACATGCTTTGAAACCTTGAATCTTTATTTACCTGGTTTGTGCTGAGAATTTTACTTCAATTTCTCATGTGCAATGGTGTCTGCTTGATGTAATTCTTTCAAACGTGGCATTATTATAATACATGCTTCTCTTCTATAATTTGAATCCTTTGCCATTCGAGCAGCATGGTGGTGAGAGTAGCTTGTTATTTTGCATCTAGGCTGATTTTTTTTATTCTTTTTATCTTTGCATAATGATGGATGTTTAAATGTTTTTTTATAATATTCTATTTTCTCTTTAGAAGATTAAATTAAAATACGACCACTATATGTTCATTGAAGCCTAAGAGGATTAAAATGTTTTTCTTTAATGTTGGAAAGACGAGATGTTTAAGTTTAGCTTAGCTGCCCAAGCTTGGAAACATTATTATTACTATTATCATCAATTTTTACAACTATTGCCAATGTATGGCTAAATGGTTAATAAATCTTTGATAGGCAAAAGCTCTTGAAAGAGCAGACTTTGGCAATGCCAAATGATTGTTGTTGAACAATTAATAATCTAGTTTCTTTTAAATCCACTTTGTCAAACTATATATATATCAAACTCCCACATTAGTTGGAGAGAGGAACGAAGCATTCCTTATAAGGGTGTGGAAACATCTTTCTAACAGACGCATTTTGAAACCTTGAGGGAAAGTGTGGAAGAGAAAGTCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGACTGTTGCAAATGGTATCAAAGCCAGACATCGGGCAGTGTGCCAGCGAGGAGTGGATTGTGAGATCTCACACCGGTTGGAGAGGAGAACGAAGCATTCCTTGTAAGGGTGTGGAAACCTCTCCCTAATAGTTGAGTTTTAAAACCTTGAGGGGAAGTCCGGAAGGGAAAGCCGAATGAGGACAATATCTGCTAGCAGTGACCCGTGTTTTGCATCAGCATAATTTTTGACAGTGACCCGTGTTTTGCATCAGCATAATTTTTGACATTTTAGCAGAACATTCCTGTTATTAACCGTTCCAATTGATTTGATTCCATACCTCCTTGATGTCCAGTCAAACATCTACTCTGATAAACTAAAGAAATTAGAATGCTTGGAAATAGGACTTGTGAAACCAGGTTGATGGTAGCTTTTGAACACATGTTGCAATTTGTTTATTTACAATAGAATAATGACGAATTTCTATTTGTCTTCCCTCTTAATGTTATCCAGTTCCTGGATGGTTGGGTTATTTTTGCCGAGTACGCAAGGCCGAGACCGCCTCCCGAGCACAATGCAGTCCCTCCATATGGCCGGTAATGACTCTCGTAAACTTCTGCAATGGAGGGTGCTTGCCCATCCATTAAACTAGTTTGGTCTGCAAAACGGCACCCAACATTGTTTTACATGATTCAAGTTCTTTCTTAGAGGGTGGTTCTTCTCTTCCATTGCAGTGAGTGAACCTTTTTGTTATGCGGAACTGGAGATTAGCCGCAGGTATCTGATGAGTTTATTTAAACTGAGACTGTGCATTTTATACGTACCATGTATGACCTATTTTTGAACACATTCAGTCATAGTTATTATAAATATATGTTCGCTAATATACTTTGCTCTGCATTCTTGTTGATGATCAGCCGCCATTGTT

mRNA sequence

CTTTTCCTGTCTAGATTTTTCTTCCCATTCTAGAAAGGGTTTAGTAGCTTAAACCCCAAGGCCATGGCTCTCAGATCGGCGGCGGCGGCGGCACCTCGGAGTTTGAGACGGCTCATTACAGGTACTTCAGCTCGTACTCTACCGATATTCTTGCAGGCTATTCATGATTGCGAGAAACCGACGCCGCCCAACACGAATGCCTTTGTTTCTGGCCGGCTGTTCTCCAGTGCTTCAACTTCCAGTTTTATTCCTCCGCCGCTTCCTCCGTCGGCTCAGCAGCGTGAGCAGCCTGAGCCTAGTACTAACCTTTTCGTCTCCGGCCTCAGTAAACGCACTACTACTGAAAAACTTAATGAAGCCTTTGCAAAGTTTGGGGAAGTTGTTCATGCAAGAGTCGTGACTGATCGAGTGACTGGATATTCTAAGGGATTCGGTTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTGGATGGTTGGGTTATTTTTGCCGAGTACGCAAGGCCGAGACCGCCTCCCGAGCACAATGCAGTCCCTCCATATGGCCGGTAATGACTCTCGTAAACTTCTGCAATGGAGGGTGCTTGCCCATCCATTAAACTAGTTTGGTCTGCAAAACGGCACCCAACATTGTTTTACATGATTCAAGTTCTTTCTTAGAGGGTGGTTCTTCTCTTCCATTGCAGTGAGTGAACCTTTTTGTTATGCGGAACTGGAGATTAGCCGCAGGTATCTGATGAGTTTATTTAAACTGAGACTGTGCATTTTATACGTACCATGTATGACCTATTTTTGAACACATTCAGTCATAGTTATTATAAATATATGTTCGCTAATATACTTTGCTCTGCATTCTTGTTGATGATCAGCCGCCATTGTT

Coding sequence (CDS)

ATGGCTCTCAGATCGGCGGCGGCGGCGGCACCTCGGAGTTTGAGACGGCTCATTACAGGTACTTCAGCTCGTACTCTACCGATATTCTTGCAGGCTATTCATGATTGCGAGAAACCGACGCCGCCCAACACGAATGCCTTTGTTTCTGGCCGGCTGTTCTCCAGTGCTTCAACTTCCAGTTTTATTCCTCCGCCGCTTCCTCCGTCGGCTCAGCAGCGTGAGCAGCCTGAGCCTAGTACTAACCTTTTCGTCTCCGGCCTCAGTAAACGCACTACTACTGAAAAACTTAATGAAGCCTTTGCAAAGTTTGGGGAAGTTGTTCATGCAAGAGTCGTGACTGATCGAGTGACTGGATATTCTAAGGGATTCGGTTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTGGATGGTTGGGTTATTTTTGCCGAGTACGCAAGGCCGAGACCGCCTCCCGAGCACAATGCAGTCCCTCCATATGGCCGGTAA

Protein sequence

MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSSFIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR

Homology

[Close]

BLAST of CmoCh09G009080 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.7e-38
Identity = 86/127 (67.72%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 51  RLF-SSASTSSFIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHA 110
           RLF S+AS  SF+ P        R Q EPSTNLFVSGLSKRTT+E L  AFA+FGEV  A
Sbjct: 26  RLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADA 85

Query: 111 RVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR------PPPE 170
           +VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGKFLDGWVIFAEYARPR       P  
Sbjct: 86  KVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQN 145

[Close]

BLAST of CmoCh09G009080 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.4e-18
Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 48  VSGRLFSSA-STSSFIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEV 107
           + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 108 VHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 160
           +H  +V D+V    KGF F++Y T E+A K I+GM GKFLDG VIF E A+ R
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of CmoCh09G009080 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-13
Identity = 37/81 (45.68%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 79  STNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 138
           ++ LF+ GLS  TT + L+EAF+K G+VV A++V DRV+  SKGFGFV +A+ ++A K +
Sbjct: 33  ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query: 139 EGMDGKFLDGWVIFAEYARPR 160
              +G+ L+G  IF +YA+ +
Sbjct: 93  MEFNGQQLNGRTIFVDYAKAK 113

[Close]

BLAST of CmoCh09G009080 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13
Identity = 33/96 (34.38%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 76  PEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAA 135
           P  +  LF++GLS  T+ + L  AF  FGE+V  +++ D+++  SKG+ F++Y T E A 
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAG 337

Query: 136 KGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYG 172
             ++ M+GK ++GW+I  + A+ +P  ++ + P +G
Sbjct: 338 TALKEMNGKIINGWMIVVDVAKTKPFRQNRSQPSFG 373

[Close]

BLAST of CmoCh09G009080 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-13
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 68  PSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVK 127
           PS  Q  +   S+ LF+ G++     + L EAF K+GEVV  RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 128 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 160
           + + E A+  I+ +DG+ L G V+   YA  R
Sbjct: 88  FTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119

[Close]

BLAST of CmoCh09G009080 vs. ExPASy TrEMBL
Match: A0A6J1FB41 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111443707 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 4.8e-91
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60
           MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60

Query: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120
           FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS
Sbjct: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 173
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR
Sbjct: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 172

[Close]

BLAST of CmoCh09G009080 vs. ExPASy TrEMBL
Match: A0A6J1INZ4 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476943 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 7.2e-87
Identity = 167/172 (97.09%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60
           MALRSAAAAAPRSLRRLITGTSARTLP+FLQAIHDCEKPT PNTNAFVSGRLFSSASTSS
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPT-PNTNAFVSGRLFSSASTSS 60

Query: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120
           FIPPPLPPSA QREQPEPSTNLFVSGLSKRTTTEKL+E FAKFGEVVHARVVTDRVTGYS
Sbjct: 61  FIPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYS 120

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 173
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR
Sbjct: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 171

[Close]

BLAST of CmoCh09G009080 vs. ExPASy TrEMBL
Match: A0A6J1FQV3 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111446092 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.6e-76
Identity = 152/172 (88.37%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60
           MALRSAAA APRSLRRLITGTS+RTLPI  QAI D EK    +TNAFVSGRLFSS S SS
Sbjct: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEK-LESSTNAFVSGRLFSSTSISS 60

Query: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120
           FIPPPLPPSAQQRE+PEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS
Sbjct: 61  FIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 173
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEH++ PP+ +
Sbjct: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQ 171

[Close]

BLAST of CmoCh09G009080 vs. ExPASy TrEMBL
Match: A0A5D3DR24 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold668G00050 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.3e-75
Identity = 150/173 (86.71%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60
           MALRSAAA+APRSLR+LITGTS RTLPI  QAIHD EKP  P+TN+F+ GRLFSSASTSS
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPV-PSTNSFLFGRLFSSASTSS 60

Query: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120
           F+PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKL+EAF+KFGEVVHARVVTDR TGYS
Sbjct: 61  FVPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYS 120

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE-HNAVPPYGR 173
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE +N   PYGR
Sbjct: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR 172

[Close]

BLAST of CmoCh09G009080 vs. ExPASy TrEMBL
Match: A0A1S3C066 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494967 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.3e-75
Identity = 150/173 (86.71%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60
           MALRSAAA+APRSLR+LITGTS RTLPI  QAIHD EKP  P+TN+F+ GRLFSSASTSS
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPV-PSTNSFLFGRLFSSASTSS 60

Query: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120
           F+PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKL+EAF+KFGEVVHARVVTDR TGYS
Sbjct: 61  FVPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYS 120

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE-HNAVPPYGR 173
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE +N   PYGR
Sbjct: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR 172

[Close]

BLAST of CmoCh09G009080 vs. NCBI nr
Match: KAG6592009.1 (Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 343.6 bits (880), Expect = 1.0e-90
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60
           MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS
Sbjct: 53  MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 112

Query: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120
           FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS
Sbjct: 113 FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 172

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 173
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR
Sbjct: 173 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 224

[Close]

BLAST of CmoCh09G009080 vs. NCBI nr
Match: XP_023535138.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343.6 bits (880), Expect = 1.0e-90
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60
           MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60

Query: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120
           FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS
Sbjct: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 173
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR
Sbjct: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 172

[Close]

BLAST of CmoCh09G009080 vs. NCBI nr
Match: XP_022937407.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita moschata] >KAG7024884.1 Organelle RRM domain-containing protein 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 343.6 bits (880), Expect = 1.0e-90
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60
           MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60

Query: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120
           FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS
Sbjct: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 173
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR
Sbjct: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 172

[Close]

BLAST of CmoCh09G009080 vs. NCBI nr
Match: XP_022976594.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 329.7 bits (844), Expect = 1.5e-86
Identity = 167/172 (97.09%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60
           MALRSAAAAAPRSLRRLITGTSARTLP+FLQAIHDCEKPT PNTNAFVSGRLFSSASTSS
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPT-PNTNAFVSGRLFSSASTSS 60

Query: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120
           FIPPPLPPSA QREQPEPSTNLFVSGLSKRTTTEKL+E FAKFGEVVHARVVTDRVTGYS
Sbjct: 61  FIPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYS 120

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 173
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR
Sbjct: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 171

[Close]

BLAST of CmoCh09G009080 vs. NCBI nr
Match: XP_038896843.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 300.4 bits (768), Expect = 9.7e-78
Identity = 155/171 (90.64%), Postives = 160/171 (93.57%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60
           MALRSAAAAAPRSLRRLITGTS RTLPI  Q IHD EK   P+TNAF+SGRLFSSASTSS
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISQTIHDWEK-LEPSTNAFLSGRLFSSASTSS 60

Query: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120
           FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKL+EAFAKFGEVVHARVVTDRVTGYS
Sbjct: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYS 120

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYG 172
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE+N   P+G
Sbjct: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNGFRPHG 170

[Close]

BLAST of CmoCh09G009080 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 159.8 bits (403), Expect = 1.9e-39
Identity = 86/127 (67.72%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 51  RLF-SSASTSSFIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHA 110
           RLF S+AS  SF+ P        R Q EPSTNLFVSGLSKRTT+E L  AFA+FGEV  A
Sbjct: 26  RLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADA 85

Query: 111 RVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR------PPPE 170
           +VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGKFLDGWVIFAEYARPR       P  
Sbjct: 86  KVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQN 145

[Close]

BLAST of CmoCh09G009080 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 112.1 bits (279), Expect = 4.5e-25
Identity = 64/116 (55.17%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 46  AFVSGRLFSSASTSSFIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGE 105
           AFVS      A +SS +    P    +R     S  LFVSGLS+ TT EKL +AFA FG+
Sbjct: 2   AFVSSFRRLVAGSSSLLSS--PSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQ 61

Query: 106 VVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPP 162
           +V ARV+TDR +G SKGFGFV YAT+EDA K    M+ KFLDGWVIF + ARPR P
Sbjct: 62  LVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREP 115

[Close]

BLAST of CmoCh09G009080 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-19
Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 48  VSGRLFSSA-STSSFIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEV 107
           + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 108 VHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 160
           +H  +V D+V    KGF F++Y T E+A K I+GM GKFLDG VIF E A+ R
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of CmoCh09G009080 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 78.2 bits (191), Expect = 7.3e-15
Identity = 37/81 (45.68%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 79  STNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 138
           ++ LF+ GLS  TT + L+EAF+K G+VV A++V DRV+  SKGFGFV +A+ ++A K +
Sbjct: 33  ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query: 139 EGMDGKFLDGWVIFAEYARPR 160
              +G+ L+G  IF +YA+ +
Sbjct: 93  MEFNGQQLNGRTIFVDYAKAK 113

[Close]

BLAST of CmoCh09G009080 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 33/96 (34.38%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 76  PEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAA 135
           P  +  LF++GLS  T+ + L  AF  FGE+V  +++ D+++  SKG+ F++Y T E A 
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAG 337

Query: 136 KGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYG 172
             ++ M+GK ++GW+I  + A+ +P  ++ + P +G
Sbjct: 338 TALKEMNGKIINGWMIVVDVAKTKPFRQNRSQPSFG 373

The following BLAST results are available for this feature:

BLAST of CmoCh09G009080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	2.7e-38	67.72	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FX45	2.4e-18	46.90	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FFZ6	1.0e-13	45.68	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q8L440	2.3e-13	34.38	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FNR1	3.0e-13	42.39	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of CmoCh09G009080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FB41	4.8e-91	100.00	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita mosch...	[more]
A0A6J1INZ4	7.2e-87	97.09	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxim...	[more]
A0A6J1FQV3	2.6e-76	88.37	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita mosch...	[more]
A0A5D3DR24	6.3e-75	86.71	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C066	6.3e-75	86.71	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of CmoCh09G009080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592009.1	1.0e-90	100.00	Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita arg...	[more]
XP_023535138.1	1.0e-90	100.00	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita pepo su...	[more]
XP_022937407.1	1.0e-90	100.00	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita moschat...	[more]
XP_022976594.1	1.5e-86	97.09	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima]	[more]
XP_038896843.1	9.7e-78	90.64	organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]	[more]

BLAST of CmoCh09G009080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54580.1	1.9e-39	67.72	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	4.5e-25	55.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	1.7e-19	46.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	7.3e-15	45.68	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	1.6e-14	34.38	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 81..154 e-value: 1.1E-23 score: 94.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 82..148 e-value: 7.5E-20 score: 70.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 80..158 score: 18.393282
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 54..166 e-value: 1.9E-28 score: 101.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..79
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 51..166
None	No IPR available	PANTHER	PTHR15241:SF280	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE	coord: 51..166
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 61..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G009080.1	CmoCh09G009080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080156	mitochondrial mRNA modification
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding