CmoCh09G008390 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G008390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description30S ribosomal protein S20
LocationCmo_Chr09: 4297970 .. 4300769 (+)
RNA-Seq ExpressionCmoCh09G008390
SyntenyCmoCh09G008390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTACAGCAGCGGATAAGCCGATACTGAACCCTGAGGTGTAAAAGAAAAGAACCACCACCGTTCTTCTTCAACCTCTGGAGCTTTTCCTTCTCAGAGTTCCCCGCTCAGAAATGGCGGCAACTGCAATTATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTCTCCCTTAATGCTTCTTCCTCTTCTATGCTCCTTTCCCCGTCTTCTTCGACCCTCAGATCTCTCAGTTTCTCCTCCAACGTTTCAGTTTCCGCCTTCTCCAATGGTGATTTCTTATGGATTTCCTTTTTTTTGCTTTGTTTTGTAGATAAACGGCGAATTTATTTGAAGGAAGTACTGAATTGCTCGACTTACTTTTGTCCATTTTCGTATAGGGTGCCTGTCGATTAGTAAAGCTCAGAGGCCATTTCGCTACTCCGTGGTCTGCGAGGCGGCTCCTAAGAAGGCTGATTCTGCTGCAAAAAGGGCTCGGCAGGCTGAGAAAAGACGCGTTTATAATAAAGCTCGGAAGTCTGAAATCAAAACCAGAATGAAGAAGGTACCTAAATTTGGCTGGTTTATATGCATTGGATTTTCGTTATTGAATCCTGTTGGAATATATTGAAATCTCTTATAATGATGTGCTTCTGGATTCGTTTTATCTTGAGAATATTATATTAGAATGGATATTGAGTGAATTTCTGAAATGATCATCTGCGTCTGACTGTCACTGAAAGGGGGACTGGATGAAATTTGTATAATTAAGAGTTGGAAGGTAGATGCTTACAATTTTGTATTCAGTACCAGTGGACAATTGGTTATATTATATATATGTTCTTATTTTGTTTGATAAGGTCATTGGTAGCTTGTTGGCTGGGATGCTTGATGTGAAATCTGATCAGTAGAGTTCTTATTGTTTCAGAAATGATTATAAACACGAAGATTACAACGGTTACTACAGGAGAACTTATGTTTTGTCTCAGATAGCTTGTAATCAAGACTTAAAAATGATTGGATCTTCAGTGTTATTTGTCATTAAAGTGACCAAAATGATTGGATCTCCAGTGTTATTTACTCGGGCTTTTGATATATATCGGTTAGTTTAAAGTATCAAGCAACCAGACTTGAGGGACAATTGTAAAAGGACTAGAAAGAAATGTCTAGTAAATGGTAGAGTTGATCGAACTTTGTTGTCCAGTGAAAGATTGCTTCAGCACAATCCTTTCTGATTGTCTAGTGGTATGTTTTTTAGGCAGTTTTCTTGTTGGTTATGACTGAACTTTAACTAATCTCCAGAATTTCCCTTTTTTTCAGTTTATAACTCTAGAAGTCTTGAACTTATTCAAGACCATTAAGGTGTTTGAATGGCCTTTGGCTTAGCTGCAGATTTATTAGAATCCTTAGTCGTGAGTGTGAGATCTCACATTGGTTGGAGAGGGAAACGAAGAATTCCTTATAAGGGTGTAGAAACCTCTCTCTAGTATATGCGTTTTGAAATTGTGTGGCTGACGGCGATACGTAACGAGCCAAAACGGACAATATCTGCTAGCGGTGAGTTTAGGATGTTACAAATAGTATTAGAGCTAGACACCGGACGGTATGTCAACGAGGAGGACGTTGGGCCCCAAGGGGGTGAATTGTGAGATCTCACATCGGTTGGAGAAGCCAAACACCGGGTAGTGTGTCAATGAGAACGCTGGCCCCCAAGAGGGGTGGATTGTGAGATCTCACATCGGTTGGAGAAGCCAGACATCGGGCGGTGTGTCAACGAGGACGCTGGCCCCAAGAGGGGTGGATTGTGAGATCTCACATCGGTTGGAGAAGCCAGACACCGGGCGGTGTGTCAACGAGGACGCTGGCCCCAAGAGGGGTGGATTGTGAGATCTCACATTGGTTAGAGAGGAGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTTCCTAGTAGATGCGTTTTAGAACTGTGATGCTGATGGCGATATGTAACGGGTCGAAGCGGACAATATTTGCGAGGGATGGGTTTGAGTGTTTTCCATTTATAATTTAGAATTCATCCTTTTCTTGTTGGAGCAGAAGAAAAGATTGGCTTTCCTCGTTATGCTTCGAACTGGTAAAAAGTGTTCTTTTTTTAAATGAATCTCTAAAGAGACGTTGCTTTCTGATACAATGGGTTGGTTTCTTTTCAATGACTTCCATCTGCTAAAGAACAGAACTAAATCATACTCTTCATATGGGTATACAAGTTTCATCCTCTACAATCTTGCTTTTGCATATTGTGAAGAAAAAGAACAGATTTTCTGTTTCATTCCAGAACTTATGAGCATACTAATAGCCTCAGTCTCATACAATTCCAGGTTATGGAAGCTTTAGATGATCTGAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGAAGCTCATTGCAGAAGCATTCTCAGTGATCGACAAAGCCGTGAAAGTGGGAACATTGCACCGAAACACCGCAGCACGTCGAAAATCTCGGCTTGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGCTTCACCAGCAGCTGCCTAATGCTCTACCCTACCCTTTTGTCTTAATGTTAATGGGCTGAGGAACTCTTCTTCTATTTTTGTATTTAGTTCGAACCTTCCTTCTATGTCTACAGTTGAGGTTTCACTCCTTTTTTCATCTGCCAAAAATGTCTAAAAAAAAAATACTTTCAGCTTAGTTTTAGATATGAAAATTTATCAACAGTATTTCAAAATACCCTTAAATTTTTTTTTTTAAATTTAATCCTTCAC

mRNA sequence

CTACAGCAGCGGATAAGCCGATACTGAACCCTGAGGTGTAAAAGAAAAGAACCACCACCGTTCTTCTTCAACCTCTGGAGCTTTTCCTTCTCAGAGTTCCCCGCTCAGAAATGGCGGCAACTGCAATTATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTCTCCCTTAATGCTTCTTCCTCTTCTATGCTCCTTTCCCCGTCTTCTTCGACCCTCAGATCTCTCAGTTTCTCCTCCAACGTTTCAGTTTCCGCCTTCTCCAATGGGTGCCTGTCGATTAGTAAAGCTCAGAGGCCATTTCGCTACTCCGTGGTCTGCGAGGCGGCTCCTAAGAAGGCTGATTCTGCTGCAAAAAGGGCTCGGCAGGCTGAGAAAAGACGCGTTTATAATAAAGCTCGGAAGTCTGAAATCAAAACCAGAATGAAGAAGGTACCTAAATTTGGCTGGTTTATATGCATTGGATTTTCGTTATTGAATCCTGTTATGGAAGCTTTAGATGATCTGAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGAAGCTCATTGCAGAAGCATTCTCAGTGATCGACAAAGCCGTGAAAGTGGGAACATTGCACCGAAACACCGCAGCACGTCGAAAATCTCGGCTTGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGCTTCACCAGCAGCTGCCTAATGCTCTACCCTACCCTTTTGTCTTAATGTTAATGGGCTGAGGAACTCTTCTTCTATTTTTGTATTTAGTTCGAACCTTCCTTCTATGTCTACAGTTGAGGTTTCACTCCTTTTTTCATCTGCCAAAAATGTCTAAAAAAAAAATACTTTCAGCTTAGTTTTAGATATGAAAATTTATCAACAGTATTTCAAAATACCCTTAAATTTTTTTTTTTAAATTTAATCCTTCAC

Coding sequence (CDS)

ATGGCGGCAACTGCAATTATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTCTCCCTTAATGCTTCTTCCTCTTCTATGCTCCTTTCCCCGTCTTCTTCGACCCTCAGATCTCTCAGTTTCTCCTCCAACGTTTCAGTTTCCGCCTTCTCCAATGGGTGCCTGTCGATTAGTAAAGCTCAGAGGCCATTTCGCTACTCCGTGGTCTGCGAGGCGGCTCCTAAGAAGGCTGATTCTGCTGCAAAAAGGGCTCGGCAGGCTGAGAAAAGACGCGTTTATAATAAAGCTCGGAAGTCTGAAATCAAAACCAGAATGAAGAAGGTACCTAAATTTGGCTGGTTTATATGCATTGGATTTTCGTTATTGAATCCTGTTATGGAAGCTTTAGATGATCTGAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGAAGCTCATTGCAGAAGCATTCTCAGTGATCGACAAAGCCGTGAAAGTGGGAACATTGCACCGAAACACCGCAGCACGTCGAAAATCTCGGCTTGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGCTTCACCAGCAGCTGCCTAA

Protein sequence

MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIGFSLLNPVMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASPAAA
Homology
[Close]
BLAST of CmoCh09G008390 vs. ExPASy Swiss-Prot
Match: Q9ASV6 (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-41
Identity = 120/207 (57.97%), Postives = 140/207 (67.63%), Query Frame = 0 

Query: 8   SCFALPSKFRNLSLNASSSSMLLSPSSS---------TL-RSLSFSSNVS-VSAFSNGCL 67
           SC  L S+F+ LSL   S S   SPSSS         TL  SLSFS +VS   AFS G L
Sbjct: 10  SCATLESQFKVLSLKGISCS---SPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNL 69

Query: 68  SISKAQRPFRYSVVCEAA--PKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGW 127
            +   Q+P R  +VCEAA   KKADSAAKRARQAEKRRVYNK++KSE +TRMKK      
Sbjct: 70  WV---QKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKK------ 129

Query: 128 FICIGFSLLNPVMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAAR 187
                      V+EAL+ LKKK +AQ++E++ +EKLI EA+S IDKAVKV  LH+NT AR
Sbjct: 130 -----------VLEALEGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGAR 189

Query: 188 RKSRLARRKKAVEIHHGWYTPASPAAA 202
           RKSRLARRKKAVEIHHGWY P + AAA
Sbjct: 190 RKSRLARRKKAVEIHHGWYVPDAAAAA 193

[Close]
BLAST of CmoCh09G008390 vs. ExPASy Swiss-Prot
Match: P82130 (30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 8.8e-41
Identity = 107/189 (56.61%), Postives = 129/189 (68.25%), Query Frame = 0 

Query: 9   CFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQRPFRYS 68
           C ++ SK  NLS +++         +S+L+ L+FS+N+S   FS GC S+   QR   +S
Sbjct: 13  CLSISSKLHNLSFSSTQF------PNSSLKPLTFSANLSQPLFSQGCSSLGSFQRR-GFS 72

Query: 69  VVCEAAP-KKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIGFSLLNPVM 128
           VVCE A  KKADSAAKR RQAE RR+ NKARKSE+KTRM+K                 V 
Sbjct: 73  VVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRK-----------------VF 132

Query: 129 EALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVE 188
           EALD LKKK  A +EE++PI+ LIAEA+S IDKAV  GTLHRNTAARRKSRLAR KK VE
Sbjct: 133 EALDALKKKSGASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVE 177

Query: 189 IHHGWYTPA 197
           IHHGWYTP+
Sbjct: 193 IHHGWYTPS 177

[Close]
BLAST of CmoCh09G008390 vs. ExPASy Swiss-Prot
Match: P80380 (30S ribosomal protein S20 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=rpsT PE=1 SV=3)

HSP 1 Score: 59.3 bits (142), Expect = 5.7e-08
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 0 

Query: 70  VCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIGFSLLNPVMEA 129
           + +  PK+  SA KR RQ+ KRR+ NKA+KS IKT  KK                     
Sbjct: 1   MAQKKPKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKA-------------------- 60

Query: 130 LDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARR 183
              ++   E ++EE L   K++ +A S+IDKA K  TLH+N AARRKSRL R+
Sbjct: 61  ---IQLAQEGKAEEAL---KIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRK 87

[Close]
BLAST of CmoCh09G008390 vs. ExPASy Swiss-Prot
Match: P62661 (30S ribosomal protein S20 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) OX=262724 GN=rpsT PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 7.5e-08
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 0 

Query: 70  VCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIGFSLLNPVMEA 129
           + +  PK+  SA KR RQ+ KRR+ NKA+KS IKT  KK                     
Sbjct: 1   MAQKKPKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKA-------------------- 60

Query: 130 LDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARR 183
              ++   E ++EE L   K++ +A S+IDKA K  TLH+N AARRKSRL R+
Sbjct: 61  ---VQLAQEGKAEEAL---KIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRK 87

[Close]
BLAST of CmoCh09G008390 vs. ExPASy Swiss-Prot
Match: Q2JI48 (30S ribosomal protein S20 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=rpsT PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-07
Identity = 42/102 (41.18%), Postives = 54/102 (52.94%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIGFSLLNPVMEALDDLKKKPEA 139
           SA KR + AE+ R+ NKA K+ ++  MKKV              NP  E L +       
Sbjct: 6   SAIKRVQIAERNRLRNKATKAMVRALMKKVISLSTAYA-----ANPQQETLQE------- 65

Query: 140 QSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLAR 182
                  I+  ++ AFS IDKA K G LH+NTAARRK+RLAR
Sbjct: 66  -------IQAAMSAAFSRIDKAAKTGVLHKNTAARRKARLAR 88

[Close]
BLAST of CmoCh09G008390 vs. ExPASy TrEMBL
Match: A0A6J1F6F1 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442556 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 8.7e-84
Identity = 184/201 (91.54%), Postives = 184/201 (91.54%), Query Frame = 0 

Query: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60
           MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIGF 120
           AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKK            
Sbjct: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKK------------ 120

Query: 121 SLLNPVMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA 180
                VMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA
Sbjct: 121 -----VMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA 180

Query: 181 RRKKAVEIHHGWYTPASPAAA 202
           RRKKAVEIHHGWYTPASPAAA
Sbjct: 181 RRKKAVEIHHGWYTPASPAAA 184

[Close]
BLAST of CmoCh09G008390 vs. ExPASy TrEMBL
Match: A0A6J1IG57 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476939 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 5.6e-83
Identity = 183/201 (91.04%), Postives = 183/201 (91.04%), Query Frame = 0 

Query: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60
           MAATAIISCFALPSKFRNLSLNASSSSM LSPSSSTLRSLSFSSNVSVSAFSNGCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIGF 120
           AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKK            
Sbjct: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKK------------ 120

Query: 121 SLLNPVMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA 180
                VMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA
Sbjct: 121 -----VMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA 180

Query: 181 RRKKAVEIHHGWYTPASPAAA 202
           RRKKAVEIHHGWYTPASPAAA
Sbjct: 181 RRKKAVEIHHGWYTPASPAAA 184

[Close]
BLAST of CmoCh09G008390 vs. ExPASy TrEMBL
Match: A0A6J1IVC5 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480940 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 7.2e-70
Identity = 161/200 (80.50%), Postives = 168/200 (84.00%), Query Frame = 0 

Query: 3   ATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62
           A A  SCFALPSKF NLSLNASSS + +S SS  LRSLSFSSNVSVSAFS+GCLS+S AQ
Sbjct: 2   AAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALRSLSFSSNVSVSAFSDGCLSMSGAQ 61

Query: 63  RPFRYSVVCEAAP-KKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIGFS 122
           RP RYSVVCEAAP KKADSAAKRARQAEKRR YNKARKSEI+TRMKK             
Sbjct: 62  RPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKK------------- 121

Query: 123 LLNPVMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLAR 182
                MEALDDLKKKPEAQSEEVLP+EKLIAEA+SVIDKAVKVGTLHRNTAA RKSRLAR
Sbjct: 122 ----AMEALDDLKKKPEAQSEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLAR 181

Query: 183 RKKAVEIHHGWYTPASPAAA 202
           RKKAVEIHHGWYTPASPAAA
Sbjct: 182 RKKAVEIHHGWYTPASPAAA 184

[Close]
BLAST of CmoCh09G008390 vs. ExPASy TrEMBL
Match: A0A6J1FKZ1 (30S ribosomal protein S20, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446691 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.6e-69
Identity = 160/200 (80.00%), Postives = 167/200 (83.50%), Query Frame = 0 

Query: 3   ATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62
           A A  SCFALPSKF NLSLNAS S + +S SS  L+SLSFSSN+SVSAFSNGCLS+S AQ
Sbjct: 2   AAASFSCFALPSKFGNLSLNASPSCLPVSSSSLALKSLSFSSNISVSAFSNGCLSMSGAQ 61

Query: 63  RPFRYSVVCEAAP-KKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIGFS 122
           RP RYSVVCEAAP KKADSAAKRARQAEKRR YNKARKSEI+TRMKK             
Sbjct: 62  RPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKK------------- 121

Query: 123 LLNPVMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLAR 182
                MEALDDLKKKPEAQSEEVLPIEKLIAEA+SVIDKAVKVGTLHRNTAA RKSRLAR
Sbjct: 122 ----AMEALDDLKKKPEAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLAR 181

Query: 183 RKKAVEIHHGWYTPASPAAA 202
           RKKAVEIHHGWYTPASPAAA
Sbjct: 182 RKKAVEIHHGWYTPASPAAA 184

[Close]
BLAST of CmoCh09G008390 vs. ExPASy TrEMBL
Match: A0A6J1CG14 (30S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010468 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.6e-69
Identity = 158/200 (79.00%), Postives = 169/200 (84.50%), Query Frame = 0 

Query: 3   ATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62
           A A I+CF++ SKFRNLSLNASSSS   S SSSTL+SL+FSSN+S  AFSNGCLS+S+AQ
Sbjct: 2   AAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNGCLSMSEAQ 61

Query: 63  RPFRYSVVCEAAP-KKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIGFS 122
           RP RYSVVCEAAP KK DSAAKRARQAEKRR+YNKARKSEIKTRMKK             
Sbjct: 62  RPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKSEIKTRMKK------------- 121

Query: 123 LLNPVMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLAR 182
               V+EALDDLKKKPEAQSEEVL IEKLIAEA+SVIDKAVKVGTLHRNTAARRKSRLAR
Sbjct: 122 ----VLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLAR 181

Query: 183 RKKAVEIHHGWYTPASPAAA 202
           RKKAVEIHHGWY PASPAAA
Sbjct: 182 RKKAVEIHHGWYAPASPAAA 184

[Close]
BLAST of CmoCh09G008390 vs. NCBI nr
Match: XP_022935732.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 319.7 bits (818), Expect = 1.8e-83
Identity = 184/201 (91.54%), Postives = 184/201 (91.54%), Query Frame = 0 

Query: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60
           MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIGF 120
           AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKK            
Sbjct: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKK------------ 120

Query: 121 SLLNPVMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA 180
                VMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA
Sbjct: 121 -----VMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA 180

Query: 181 RRKKAVEIHHGWYTPASPAAA 202
           RRKKAVEIHHGWYTPASPAAA
Sbjct: 181 RRKKAVEIHHGWYTPASPAAA 184

[Close]
BLAST of CmoCh09G008390 vs. NCBI nr
Match: XP_022976587.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024812.1 30S ribosomal protein S20, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 317.0 bits (811), Expect = 1.2e-82
Identity = 183/201 (91.04%), Postives = 183/201 (91.04%), Query Frame = 0 

Query: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60
           MAATAIISCFALPSKFRNLSLNASSSSM LSPSSSTLRSLSFSSNVSVSAFSNGCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIGF 120
           AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKK            
Sbjct: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKK------------ 120

Query: 121 SLLNPVMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA 180
                VMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA
Sbjct: 121 -----VMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA 180

Query: 181 RRKKAVEIHHGWYTPASPAAA 202
           RRKKAVEIHHGWYTPASPAAA
Sbjct: 181 RRKKAVEIHHGWYTPASPAAA 184

[Close]
BLAST of CmoCh09G008390 vs. NCBI nr
Match: XP_023534903.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.5 bits (802), Expect = 1.3e-81
Identity = 180/201 (89.55%), Postives = 182/201 (90.55%), Query Frame = 0 

Query: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60
           MAATA+ISCF+LPSKFRNLSLNASSSSM LSPSSSTLRSLSFSSNVSVSAFSNGCLSISK
Sbjct: 1   MAATAVISCFSLPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIGF 120
           AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKK            
Sbjct: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKK------------ 120

Query: 121 SLLNPVMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA 180
                VMEALDDLKKKPE QSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA
Sbjct: 121 -----VMEALDDLKKKPEPQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLA 180

Query: 181 RRKKAVEIHHGWYTPASPAAA 202
           RRKKAVEIHHGWYTPASPAAA
Sbjct: 181 RRKKAVEIHHGWYTPASPAAA 184

[Close]
BLAST of CmoCh09G008390 vs. NCBI nr
Match: XP_038899721.1 (30S ribosomal protein S20, chloroplastic [Benincasa hispida])

HSP 1 Score: 278.5 bits (711), Expect = 4.6e-71
Identity = 164/202 (81.19%), Postives = 174/202 (86.14%), Query Frame = 0 

Query: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60
           MAATA +SCF+LPSKFRNLSLNASSS +  SPSS TLRSLSFSSN SVSAFSNGCL++SK
Sbjct: 1   MAATA-VSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSK 60

Query: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIG 120
           AQRP RYSVVCEAAPK KADSAAKR RQAEKRR+YNKARKSEIKTR+KK           
Sbjct: 61  AQRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKK----------- 120

Query: 121 FSLLNPVMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRL 180
                 V+EALD LKKKPEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRL
Sbjct: 121 ------VLEALDGLKKKPEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRL 180

Query: 181 ARRKKAVEIHHGWYTPASPAAA 202
           ARRKKAVEIHHGWYTP SPAAA
Sbjct: 181 ARRKKAVEIHHGWYTPDSPAAA 184

[Close]
BLAST of CmoCh09G008390 vs. NCBI nr
Match: KAG6607892.1 (30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037419.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 274.2 bits (700), Expect = 8.7e-70
Identity = 161/200 (80.50%), Postives = 168/200 (84.00%), Query Frame = 0 

Query: 3   ATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62
           A A  SCFALPSKF NLSLNASSS + +S SS  L+SLSFSSN+SVSAFSNGCLS+S AQ
Sbjct: 2   AAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKSLSFSSNISVSAFSNGCLSMSGAQ 61

Query: 63  RPFRYSVVCEAAP-KKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGWFICIGFS 122
           RP RYSVVCEAAP KKADSAAKRARQAEKRR YNKARKSEI+TRMKK             
Sbjct: 62  RPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKK------------- 121

Query: 123 LLNPVMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLAR 182
                MEALDDLKKKPEAQSEEVLPIEKLIAEA+SVIDKAVKVGTLHRNTAA RKSRLAR
Sbjct: 122 ----AMEALDDLKKKPEAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLAR 181

Query: 183 RKKAVEIHHGWYTPASPAAA 202
           RKKAVEIHHGWYTPASPAAA
Sbjct: 182 RKKAVEIHHGWYTPASPAAA 184

[Close]
BLAST of CmoCh09G008390 vs. TAIR 10
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative )

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-42
Identity = 120/207 (57.97%), Postives = 140/207 (67.63%), Query Frame = 0 

Query: 8   SCFALPSKFRNLSLNASSSSMLLSPSSS---------TL-RSLSFSSNVS-VSAFSNGCL 67
           SC  L S+F+ LSL   S S   SPSSS         TL  SLSFS +VS   AFS G L
Sbjct: 10  SCATLESQFKVLSLKGISCS---SPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNL 69

Query: 68  SISKAQRPFRYSVVCEAA--PKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVPKFGW 127
            +   Q+P R  +VCEAA   KKADSAAKRARQAEKRRVYNK++KSE +TRMKK      
Sbjct: 70  WV---QKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKK------ 129

Query: 128 FICIGFSLLNPVMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAAR 187
                      V+EAL+ LKKK +AQ++E++ +EKLI EA+S IDKAVKV  LH+NT AR
Sbjct: 130 -----------VLEALEGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGAR 189

Query: 188 RKSRLARRKKAVEIHHGWYTPASPAAA 202
           RKSRLARRKKAVEIHHGWY P + AAA
Sbjct: 190 RKSRLARRKKAVEIHHGWYVPDAAAAA 193

The following BLAST results are available for this feature:
BLAST of CmoCh09G008390 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ASV62.3e-4157.9730S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS2... [more]
P821308.8e-4156.6130S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 P... [more]
P803805.7e-0840.7130S ribosomal protein S20 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 /... [more]
P626617.5e-0840.7130S ribosomal protein S20 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 703... [more]
Q2JI481.7e-0741.1830S ribosomal protein S20 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=32133... [more]
BLAST of CmoCh09G008390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F6F18.7e-8491.5430S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IG575.6e-8391.0430S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1IVC57.2e-7080.5030S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1FKZ11.6e-6980.0030S ribosomal protein S20, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1CG144.6e-6979.0030S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of CmoCh09G008390 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022935732.11.8e-8391.5430S ribosomal protein S20, chloroplastic-like [Cucurbita moschata][more]
XP_022976587.11.2e-8291.0430S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 3... [more]
XP_023534903.11.3e-8189.5530S ribosomal protein S20, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_038899721.14.6e-7181.1930S ribosomal protein S20, chloroplastic [Benincasa hispida][more]
KAG6607892.18.7e-7080.5030S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of CmoCh09G008390 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15190.11.6e-4257.97chloroplast 30S ribosomal protein S20, putative [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002583Ribosomal protein S20PFAMPF01649Ribosomal_S20pcoord: 79..110
e-value: 2.6E-7
score: 31.1
coord: 143..182
e-value: 1.9E-11
score: 44.4
IPR002583Ribosomal protein S20PANTHERPTHR3339830S RIBOSOMAL PROTEIN S20coord: 1..109
coord: 126..200
IPR002583Ribosomal protein S20HAMAPMF_00500Ribosomal_S20coord: 73..185
score: 15.368664
IPR036510Ribosomal protein S20 superfamilyGENE3D1.20.58.110Ribosomal protein S20coord: 70..201
e-value: 9.7E-34
score: 117.6
IPR036510Ribosomal protein S20 superfamilySUPERFAMILY46992Ribosomal protein S20coord: 141..197
IPR036510Ribosomal protein S20 superfamilySUPERFAMILY46992Ribosomal protein S20coord: 79..110
NoneNo IPR availablePANTHERPTHR33398:SF530S RIBOSOMAL PROTEIN S20, CHLOROPLASTICcoord: 1..109
coord: 126..200

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G008390.1CmoCh09G008390.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding