CmoCh09G008320 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G008320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Nucleic acid-binding, OB-fold containing protein
Location	Cmo_Chr09: 4276427 .. 4278496 (-)
RNA-Seq Expression	CmoCh09G008320
Synteny	CmoCh09G008320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGCAGTAGTTCAGAAATCTCTTTTTCAACACTCGAATTTCAAAAGTTCAAGACTATATCTGGACTAACTCGGCTCTACTCCTATCAGGATCTGAGTCCTTGAGGTAGAAGTGAGCGTGATTTTGAAGGAAAAAGAGAAACGAAGAAGCAGACGATCCTTCGAAAGAATACCTTAGTTCAAGAATGATAGATCGAAAGAGTAAGTAAGTTCAAGTAAGTTCAAGATGGATATATCAATTGATGTGTTTATTTATAGAAAGTTTATAACTTTGAAGCATTGGTTTATTATTTTTGTCAAATTATTTTGTGTTGGAAAAAATGTCCCAAAAAAATCAAGGACGAAAGCAGAATGAAGATGCTATATTTAAACACCCACCCTGTAACTTCCCACGAGTGACAGCGCTAGAAGAAGAGGGAGAGAGGAGAAAATTTCGATCGATTTACGCGGATTGGTATCAGGATTTGGCGTGCTGCTGATCTTCGGCTTCGGCATCAATGGCGACGGAAAAATCACCTACGCCGGCATCGAGATCAGGCTTGAGAAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGTCACACACTCATCGTCAAGGTCGTTAGCTCCAATACCGTGCTGCAGAAAGGTCGATCGGTGTCACAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTATTGGAGACGAAACTGGAACCATTTTGTTCACGGCGCGTAATGATCAGGGTATGAATTTTGAAATCTTCCGTTGCTGTTACGCTTTATGTAGTGTTTTTCATGAATTGAGTAGGGAAAATTAGGTATTGTTGGATCGCAGGTGGGGAGGCTAAATCAATGATTATGTAGATTGGAATGTTTGAACTATGTGCCCTAGAGCGATTATTAAACAATATGGATTGTGAGATAGGGTTTGGCGGATTACCTACATCTTACCGATGCGCTTAAAGGAACTTGAAACTAGAAATATGCATTGATTTTGCTCTACAAAACGTAATTTCATTATCAGTAGCTTGAACTGGATGCGTTAGAATGGCTAGGAAGAATCAAATCCCTGTGGTTTCCTGTTATTGACCATAATCTGCAGCTTGATAAATGAAGATTTGAACTGAAACTGAAGTGTTTGATGTTAATTTCTCACAAATCCCTAGCCCAATCTGCTTCTAGCTGGTCTGCAAACTATTGCCACTTGAATCTCTAGCTTTGAAATGAAATCTCTGCAATGAACTCATTTATCATGTTGTCTTATATGGTTATTTGTTTGCTCAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGATCAATGAGGCTCGCAGTCGATAAATGGGGCCGCATCGAGGTCGTCGAGCCCGAAAATTTCGTCGTCAAGGAAGACAATAATCTATCTTTAATTGAGTATGAACTTGTGAATGTTGCAGAGGAATGAGAAGAAGAAGGCCAACTTTATGCATATAATCAATGGACATTGATATCAGTTTCCAGGTAATCTGCTGATGTGAATATATATATATATATAGAACATCGCTATATTATAGTTTTGTATGGGTGAACGAACTGCCCCTTAAGCTCACACACAGTTTTCAATCTGCTGGGCATGTATATTGTATACTCTCTAGTTGTTATCCAACCTGGTTTGTTTATCTTAAAACTTCCGAGATCTATTTGATATTTTTGAAATTTAAAGACCGTGATAGCTCAATTGTCTTGATTTGTTAGCTAGTTAACATTTTTTATATTTTATCCTTCGGGGACATCTGATATAGAGAAGATTAGCATGACCCTTGTGCAAGAATGACATGCACAAATCGAGAAATGGTATAAGAGTCACACATCGTGATAGCGAGAACAACACTGGGCCCCAAGGGGAGCGAATTGTGAGGTCCCACTTGGAAAGGGTCTCCTTGATAGACGCATTTTAAACCCGTGAAGCTGACATCAAAGTGGACAATATCTTCTAACAGGCATCTTGATAATATCTTCTAACAGGCATCTAAGGTTAACAAGATATGAATATGGGTACCAAC

mRNA sequence

ATTTGCAGTAGTTCAGAAATCTCTTTTTCAACACTCGAATTTCAAAAGTTCAAGACTATATCTGGACTAACTCGGCTCTACTCCTATCAGGATCTGAGTCCTTGAGGTAGAAGTGAGCGTGATTTTGAAGGAAAAAGAGAAACGAAGAAGCAGACGATCCTTCGAAAGAATACCTTAGTTCAAGAATGATAGATCGAAAGAGTAAGTAAGTTCAAGACGAAAGCAGAATGAAGATGCTATATTTAAACACCCACCCTGTAACTTCCCACGAGTGACAGCGCTAGAAGAAGAGGGAGAGAGGAGAAAATTTCGATCGATTTACGCGGATTGGTATCAGGATTTGGCGTGCTGCTGATCTTCGGCTTCGGCATCAATGGCGACGGAAAAATCACCTACGCCGGCATCGAGATCAGGCTTGAGAAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGTCACACACTCATCGTCAAGGTCGTTAGCTCCAATACCGTGCTGCAGAAAGGTCGATCGGTGTCACAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTATTGGAGACGAAACTGGAACCATTTTGTTCACGGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGATCAATGAGGCTCGCAGTCGATAAATGGGGCCGCATCGAGGTCGTCGAGCCCGAAAATTTCGTCGTCAAGGAAGACAATAATCTATCTTTAATTGAGTATGAACTTGTGAATGTTGCAGAGGAATGAGAAGAAGAAGGCCAACTTTATGCATATAATCAATGGACATTGATATCAGTTTCCAGGTAATCTGCTGATGTGAATATATATATATATATAGAACATCGCTATATTATAGTTTTGTATGGGTGAACGAACTGCCCCTTAAGCTCACACACAGTTTTCAATCTGCTGGGCATGTATATTGTATACTCTCTAGTTGTTATCCAACCTGGTTTGTTTATCTTAAAACTTCCGAGATCTATTTGATATTTTTGAAATTTAAAGACCGTGATAGCTCAATTGTCTTGATTTGTTAGCTAGTTAACATTTTTTATATTTTATCCTTCGGGGACATCTGATATAGAGAAGATTAGCATGACCCTTGTGCAAGAATGACATGCACAAATCGAGAAATGGTATAAGAGTCACACATCGTGATAGCGAGAACAACACTGGGCCCCAAGGGGAGCGAATTGTGAGGTCCCACTTGGAAAGGGTCTCCTTGATAGACGCATTTTAAACCCGTGAAGCTGACATCAAAGTGGACAATATCTTCTAACAGGCATCTTGATAATATCTTCTAACAGGCATCTAAGGTTAACAAGATATGAATATGGGTACCAAC

Coding sequence (CDS)

ATGGCGACGGAAAAATCACCTACGCCGGCATCGAGATCAGGCTTGAGAAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGTCACACACTCATCGTCAAGGTCGTTAGCTCCAATACCGTGCTGCAGAAAGGTCGATCGGTGTCACAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTATTGGAGACGAAACTGGAACCATTTTGTTCACGGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGATCAATGAGGCTCGCAGTCGATAAATGGGGCCGCATCGAGGTCGTCGAGCCCGAAAATTTCGTCGTCAAGGAAGACAATAATCTATCTTTAATTGAGTATGAACTTGTGAATGTTGCAGAGGAATGA

Protein sequence

MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDNNLSLIEYELVNVAEE

Homology

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BLAST of CmoCh09G008320 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.1e-44
Identity = 90/132 (68.18%), Postives = 105/132 (79.55%), Query Frame = 0


Query: 16  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLIGDE 75
           RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECLIGDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 76  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDN 135
           TG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL VDKWGRIE     +F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 136 NLSLIEYELVNV 142
           NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149

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BLAST of CmoCh09G008320 vs. ExPASy TrEMBL
Match: A0A6J1FBC1 (uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC111442557 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.5e-72
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60
           MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR
Sbjct: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60

Query: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120
           IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP
Sbjct: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120

Query: 121 ENFVVKEDNNLSLIEYELVNVAEE 145
           ENFVVKEDNNLSLIEYELVNVAEE
Sbjct: 121 ENFVVKEDNNLSLIEYELVNVAEE 144

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BLAST of CmoCh09G008320 vs. ExPASy TrEMBL
Match: A0A6J1IMN6 (uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC111476946 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.4e-69
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60
           MATEKSPTPASRSGLRKPVFVKVEQL PGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR
Sbjct: 1   MATEKSPTPASRSGLRKPVFVKVEQLNPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60

Query: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120
           IAECLIGDETGTILFTA NDQVDQVKPGTTIILRNAKI+MFKGSMRLAVDKWGRIEVVEP
Sbjct: 61  IAECLIGDETGTILFTALNDQVDQVKPGTTIILRNAKINMFKGSMRLAVDKWGRIEVVEP 120

Query: 121 ENFVVKEDNNLSLIEYELVNVA 143
           +NFVVKEDNNLSL+EYELVNVA
Sbjct: 121 KNFVVKEDNNLSLVEYELVNVA 142

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BLAST of CmoCh09G008320 vs. ExPASy TrEMBL
Match: A0A5D3DWE0 (Nucleic acid-binding OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001550 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 135/154 (87.66%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEVVEPENFVVKEDNNLSLIEYELVNVAEE 145
           KWGRIE+ +PE+FVVKEDNNLSL+EYELVNVAEE
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of CmoCh09G008320 vs. ExPASy TrEMBL
Match: A0A1S3CKC4 (uncharacterized protein At4g28440-like OS=Cucumis melo OX=3656 GN=LOC103501787 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 135/154 (87.66%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEVVEPENFVVKEDNNLSLIEYELVNVAEE 145
           KWGRIE+ +PE+FVVKEDNNLSL+EYELVNVAEE
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of CmoCh09G008320 vs. ExPASy TrEMBL
Match: A0A0A0L242 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629450 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.0e-66
Identity = 135/154 (87.66%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEVVEPENFVVKEDNNLSLIEYELVNVAEE 145
           KWGRIE+ +PE+FVVKEDNNLSL+EYELVNVAEE
Sbjct: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of CmoCh09G008320 vs. NCBI nr
Match: XP_022935733.1 (uncharacterized protein At4g28440-like [Cucurbita moschata])

HSP 1 Score: 281.2 bits (718), Expect = 5.1e-72
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60
           MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR
Sbjct: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60

Query: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120
           IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP
Sbjct: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120

Query: 121 ENFVVKEDNNLSLIEYELVNVAEE 145
           ENFVVKEDNNLSLIEYELVNVAEE
Sbjct: 121 ENFVVKEDNNLSLIEYELVNVAEE 144

[Close]

BLAST of CmoCh09G008320 vs. NCBI nr
Match: XP_023535412.1 (uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.8 bits (717), Expect = 6.6e-72
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60
           MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR
Sbjct: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60

Query: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120
           IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP
Sbjct: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120

Query: 121 ENFVVKEDNNLSLIEYELVNVAEE 145
           ENFVVKEDNNLSL+EYELVNVAEE
Sbjct: 121 ENFVVKEDNNLSLVEYELVNVAEE 144

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BLAST of CmoCh09G008320 vs. NCBI nr
Match: KAG6591934.1 (hypothetical protein SDJN03_14280, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024807.1 hypothetical protein SDJN02_13626 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.4 bits (716), Expect = 8.7e-72
Identity = 142/144 (98.61%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60
           MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR
Sbjct: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60

Query: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120
           IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP
Sbjct: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120

Query: 121 ENFVVKEDNNLSLIEYELVNVAEE 145
           ENF+VKEDNNLSL+EYELVNVAEE
Sbjct: 121 ENFIVKEDNNLSLVEYELVNVAEE 144

[Close]

BLAST of CmoCh09G008320 vs. NCBI nr
Match: XP_022976598.1 (uncharacterized protein At4g28440-like [Cucurbita maxima])

HSP 1 Score: 269.6 bits (688), Expect = 1.5e-68
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60
           MATEKSPTPASRSGLRKPVFVKVEQL PGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR
Sbjct: 1   MATEKSPTPASRSGLRKPVFVKVEQLNPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60

Query: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120
           IAECLIGDETGTILFTA NDQVDQVKPGTTIILRNAKI+MFKGSMRLAVDKWGRIEVVEP
Sbjct: 61  IAECLIGDETGTILFTALNDQVDQVKPGTTIILRNAKINMFKGSMRLAVDKWGRIEVVEP 120

Query: 121 ENFVVKEDNNLSLIEYELVNVA 143
           +NFVVKEDNNLSL+EYELVNVA
Sbjct: 121 KNFVVKEDNNLSLVEYELVNVA 142

[Close]

BLAST of CmoCh09G008320 vs. NCBI nr
Match: XP_038899654.1 (uncharacterized protein At4g28440-like [Benincasa hispida])

HSP 1 Score: 262.7 bits (670), Expect = 1.9e-66
Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQSNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEVVEPENFVVKEDNNLSLIEYELVNVAEE 145
           KWGRIE+ EPE+FVVKEDNNLSL+EYELVNVAEE
Sbjct: 121 KWGRIELAEPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of CmoCh09G008320 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-49
Identity = 98/143 (68.53%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 3   TEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRI 62
           ++  P   +    +KPVFVKV+QLKPGT+GHTL VKVV  N+V QK G + S HLR  RI
Sbjct: 40  SQNQPPQHTPQEKKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARI 99

Query: 63  AECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPE 122
           +ECL+GDET  ILFTARNDQV+ +KPG T+ LRNAKIDMFKGSMRLAVDKWGRIE  EP 
Sbjct: 100 SECLVGDETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPA 159

Query: 123 NFVVKEDNNLSLIEYELVNVAEE 145
           +  VKEDNNLSL+EYELVNV EE
Sbjct: 160 DITVKEDNNLSLVEYELVNVVEE 182

[Close]

BLAST of CmoCh09G008320 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 191.8 bits (486), Expect = 3.8e-49
Identity = 90/134 (67.16%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 10  ASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDE 69
           ++++GL+KP F KV+QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC++GDE
Sbjct: 4   STKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIVGDE 63

Query: 70  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDN 129
           TG I+FTARNDQVD +K G+T+ LRNAKIDM+KGSMRLAVDKWGR+EV EP +F VKED 
Sbjct: 64  TGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDT 123

Query: 130 NLSLIEYELVNVAE 144
           N+SLIEYELVNV E
Sbjct: 124 NMSLIEYELVNVVE 137

[Close]

BLAST of CmoCh09G008320 vs. TAIR 10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 178.3 bits (451), Expect = 4.3e-45
Identity = 90/132 (68.18%), Postives = 105/132 (79.55%), Query Frame = 0


Query: 16  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLIGDE 75
           RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECLIGDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 76  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDN 135
           TG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL VDKWGRIE     +F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 136 NLSLIEYELVNV 142
           NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]

BLAST of CmoCh09G008320 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 177.6 bits (449), Expect = 7.4e-45
Identity = 89/132 (67.42%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 13  SGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLIGDET 72
           S LRKPVF KV +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECL+GDET
Sbjct: 6   SALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLVGDET 65

Query: 73  GTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVV-EPENFVVKEDN 132
           G I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+WGR+EV  EP +  VK+DN
Sbjct: 66  GIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDN 125

Query: 133 NLSLIEYELVNV 142
           NLSLIEYELV+V
Sbjct: 126 NLSLIEYELVSV 137

[Close]

BLAST of CmoCh09G008320 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 177.6 bits (449), Expect = 7.4e-45
Identity = 89/132 (67.42%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 13  SGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLIGDET 72
           S LRKPVF KV +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECL+GDET
Sbjct: 20  SALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLVGDET 79

Query: 73  GTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVV-EPENFVVKEDN 132
           G I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+WGR+EV  EP +  VK+DN
Sbjct: 80  GIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDN 139

Query: 133 NLSLIEYELVNV 142
           NLSLIEYELV+V
Sbjct: 140 NLSLIEYELVSV 151

The following BLAST results are available for this feature:

BLAST of CmoCh09G008320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	6.1e-44	68.18	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]

BLAST of CmoCh09G008320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBC1	2.5e-72	100.00	uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1IMN6	7.4e-69	96.48	uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC1114769...	[more]
A0A5D3DWE0	1.2e-66	87.66	Nucleic acid-binding OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384...	[more]
A0A1S3CKC4	1.2e-66	87.66	uncharacterized protein At4g28440-like OS=Cucumis melo OX=3656 GN=LOC103501787 P...	[more]
A0A0A0L242	2.0e-66	87.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629450 PE=4 SV=1	[more]

BLAST of CmoCh09G008320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935733.1	5.1e-72	100.00	uncharacterized protein At4g28440-like [Cucurbita moschata]	[more]
XP_023535412.1	6.6e-72	99.31	uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]	[more]
KAG6591934.1	8.7e-72	98.61	hypothetical protein SDJN03_14280, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022976598.1	1.5e-68	96.48	uncharacterized protein At4g28440-like [Cucurbita maxima]	[more]
XP_038899654.1	1.9e-66	88.31	uncharacterized protein At4g28440-like [Benincasa hispida]	[more]

BLAST of CmoCh09G008320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33845.1	1.3e-49	68.53	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G23750.1	3.8e-49	67.16	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G28440.1	4.3e-45	68.18	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.1	7.4e-45	67.42	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	7.4e-45	67.42	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 30..133 e-value: 1.6E-44 score: 152.3
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 2..144
None	No IPR available	PANTHER	PTHR31472:SF23	F11M21.26 PROTEIN	coord: 2..144
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 34..118 e-value: 7.80068E-18 score: 71.1149
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 12..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G008320.1	CmoCh09G008320.1	mRNA