CmoCh09G006520 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCGCTATCCTGATCTGTGTTTCTAGTAATTTCCACGAGTGGAACCCAAATGAGCAGCGGGTTCAACTTCACGGGCTTCTACGCCACCTGGTTTGACCATCTCCGCCACCTCATCCACCAGCTTTCCTCCACCACCACCGCCGCCAAAGAAAACCGATCCTCCACCACCGATGACCTCCGCCACCTCGTCCACACTGTCATGTCCCACTACAGCGATTACTACCACGTCAAGTCCCTCGCCGCCGAGCGCGACCCTCTCTCCGTCTTCTCCGCTCCTTGGGCTACCTCCCTGGAACGCTCCCTCCACTGGATCGCCGGCTGGCGACCCACCACCACGTTTCATCTCATCTACTCTGAATCCTCCATCCTTTTTGAATCACGTATCGTTGATATTCTCCATGGGCTTCGAACCGGCGACCTCGGTGACCTCTCCCCTTCTCAGTTTTGCCGTGTTAGCGAGCTCCAATGCCAAACTGTAAGCCCCTAACCCTCTTTTGCTTTATTTTTTGTTGCATTTCTTTTTTCAATTTCCTTTTTTTTTTAATACTCTTTAGAACACCCCAATAATTTTCAAAATTGAATAGAAATTAAAACCCAGATGTTGAATTCTTGAGTGAAAAAAATTACATATTCAAAACAAGCCCAGATAGCTCCGGGAGTCCGTCCCAAATGGGTTAATTTAGGGAATGATGCTGAGTGAGTTTATGGATGAATCCATTAGTACGAGACATTTTGGATAAACAAACGAACAAAATCACCAGAGTTTAGGCTCAAAATGAATAATATCATACTATTGTGGAGAGTCGTGATTCTTAACATGGTATCAGAGTCGTACCGATTTCAACTAGAAGTTGTAAGTAAGCCTTATAGTCAAAAGTGTCTTAAGTGTCAAATAAATAGGGTATTTTGTTCAAGAGCTCCAAAGAATGAGTCGAGTCGAGTCTCGATTGATGGATGGTTGTTCGACTTCAAGTGTCGAACAAATAAATTGTGAACCTCGAAGGTGTAGTCATTAGGGATGGTGGTTCGGCTCAAAGTGTCGAAAAAAGAAGAAGTAATCAAAAGGTGACTCAAATGTCACACCTTTAAGGGCTTATGAAGCGAACCTCGATTAAGGGGTGGCTGTTTGAGGGCTTCGTAGACTTAAGGGAGGCTTTATAGCGTACTTGTTCGTGAAAACTGTTAGAAGGGTCCCACTTTTTTTAATTGGTACGAGACCTTTTACCGAAAATATCATATCATTATGGATGGAGAGTCAGTGATTACTAACAAACCCTTCGAGCGAAATAAGAACCGTCGTCAAACATTAAAAAAAACAGAATTTGGGGTGTAATTTTTTTTGTTGAAGGGCGGTGGGAAATGTTTGATAGGTGGAGGAGGAGAATGCGATAACGGACGAGCTGTCGGAGTGGCAAGACAACGTGAGCGATCTGATCGGAACAAGGACGGAACTGACGGGGAAAGTGGAAGGTCTGGTGAGCATTATAAAGAAAGCCGACGATCTACGGCTGAGGACAGTGCAGAAGGTGGTGGAGCTTCTCACGCCAAAGCAGGCGGTGGAGTTCCTCATCGCCGCCGCCGAGCTCCAGTTCGGCGTTCGGGGATGGGGGCTGAATCAGGACCGTGAACGGAGCAATAATCGCGACGGTAACTAAAAGAAACATTAAATTCCCCGAAAAAGCAACCAAAAAACAGAGATTTGCTAATATATTTATGAATATTAATTTTCTTACAGAACTTGATCGGAAAAAAAATGAAGCCTTTCAGTGTTCTATTAACATAATTTAAATAAATTTTGAGGAGTTTTTATTTTTGTTCTTTAATTGTTTGAATAATTATCAGCTAAATATTTAATACAGTGGTAATCTTTGAGACGACACGTGGCGGACATGCAGGTATTGGTCTTGTATACGTGTCCCGACGTGACGTGGGCAGTTAAGTCGACGTCAGAAACTCAATAATGGAAGTTTAATGAATTATGTTTGCTTTAATTTGCTTAATTTTATATTTATTAGATTTTGCCTAATAGCTATGATATTATTAAAATAATTAAGAAGAATCTATTATAATTTGATATAAAATTTAAATTTTATATCAAATATATAACGATGTTACAAAAATCGAGCTCTAATCTAATTTAATCAATTTTATCTAATTTTATCAGCTGTATACCAC CCGCTATCCTGATCTGTGTTTCTAGTAATTTCCACGAGTGGAACCCAAATGAGCAGCGGGTTCAACTTCACGGGCTTCTACGCCACCTGGTTTGACCATCTCCGCCACCTCATCCACCAGCTTTCCTCCACCACCACCGCCGCCAAAGAAAACCGATCCTCCACCACCGATGACCTCCGCCACCTCGTCCACACTGTCATGTCCCACTACAGCGATTACTACCACGTCAAGTCCCTCGCCGCCGAGCGCGACCCTCTCTCCGTCTTCTCCGCTCCTTGGGCTACCTCCCTGGAACGCTCCCTCCACTGGATCGCCGGCTGGCGACCCACCACCACGTTTCATCTCATCTACTCTGAATCCTCCATCCTTTTTGAATCACGTATCGTTGATATTCTCCATGGGCTTCGAACCGGCGACCTCGGTGACCTCTCCCCTTCTCAGTTTTGCCGTGTTAGCGAGCTCCAATGCCAAACTGTGGAGGAGGAGAATGCGATAACGGACGAGCTGTCGGAGTGGCAAGACAACGTGAGCGATCTGATCGGAACAAGGACGGAACTGACGGGGAAAGTGGAAGGTCTGGTGAGCATTATAAAGAAAGCCGACGATCTACGGCTGAGGACAGTGCAGAAGGTGGTGGAGCTTCTCACGCCAAAGCAGGCGGTGGAGTTCCTCATCGCCGCCGCCGAGCTCCAGTTCGGCGTTCGGGGATGGGGGCTGAATCAGGACCGTGAACGGAGCAATAATCGCGACGGTAACTAAAAGAAACATTAAATTCCCCGAAAAAGCAACCAAAAAACAGAGATTTGCTAATATATTTATGAATATTAATTTTCTTACAGAACTTGATCGGAAAAAAAATGAAGCCTTTCAGTGTTCTATTAACATAATTTAAATAAATTTTGAGGAGTTTTTATTTTTGTTCTTTAATTGTTTGAATAATTATCAGCTAAATATTTAATACAGTGGTAATCTTTGAGACGACACGTGGCGGACATGCAGGTATTGGTCTTGTATACGTGTCCCGACGTGACGTGGGCAGTTAAGTCGACGTCAGAAACTCAATAATGGAAGTTTAATGAATTATGTTTGCTTTAATTTGCTTAATTTTATATTTATTAGATTTTGCCTAATAGCTATGATATTATTAAAATAATTAAGAAGAATCTATTATAATTTGATATAAAATTTAAATTTTATATCAAATATATAACGATGTTACAAAAATCGAGCTCTAATCTAATTTAATCAATTTTATCTAATTTTATCAGCTGTATACCAC ATGAGCAGCGGGTTCAACTTCACGGGCTTCTACGCCACCTGGTTTGACCATCTCCGCCACCTCATCCACCAGCTTTCCTCCACCACCACCGCCGCCAAAGAAAACCGATCCTCCACCACCGATGACCTCCGCCACCTCGTCCACACTGTCATGTCCCACTACAGCGATTACTACCACGTCAAGTCCCTCGCCGCCGAGCGCGACCCTCTCTCCGTCTTCTCCGCTCCTTGGGCTACCTCCCTGGAACGCTCCCTCCACTGGATCGCCGGCTGGCGACCCACCACCACGTTTCATCTCATCTACTCTGAATCCTCCATCCTTTTTGAATCACGTATCGTTGATATTCTCCATGGGCTTCGAACCGGCGACCTCGGTGACCTCTCCCCTTCTCAGTTTTGCCGTGTTAGCGAGCTCCAATGCCAAACTGTGGAGGAGGAGAATGCGATAACGGACGAGCTGTCGGAGTGGCAAGACAACGTGAGCGATCTGATCGGAACAAGGACGGAACTGACGGGGAAAGTGGAAGGTCTGGTGAGCATTATAAAGAAAGCCGACGATCTACGGCTGAGGACAGTGCAGAAGGTGGTGGAGCTTCTCACGCCAAAGCAGGCGGTGGAGTTCCTCATCGCCGCCGCCGAGCTCCAGTTCGGCGTTCGGGGATGGGGGCTGAATCAGGACCGTGAACGGAGCAATAATCGCGACGGTAACTAA MSSGFNFTGFYATWFDHLRHLIHQLSSTTTAAKENRSSTTDDLRHLVHTVMSHYSDYYHVKSLAAERDPLSVFSAPWATSLERSLHWIAGWRPTTTFHLIYSESSILFESRIVDILHGLRTGDLGDLSPSQFCRVSELQCQTVEEENAITDELSEWQDNVSDLIGTRTELTGKVEGLVSIIKKADDLRLRTVQKVVELLTPKQAVEFLIAAAELQFGVRGWGLNQDRERSNNRDGN Homology
BLAST of CmoCh09G006520 vs. ExPASy Swiss-Prot
Match: Q84JC2 (Protein DOG1-like 4 OS=Arabidopsis thaliana OX=3702 GN=DOGL4 PE=1 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 3.1e-21 Identity = 68/233 (29.18%), Postives = 111/233 (47.64%), Query Frame = 0
BLAST of CmoCh09G006520 vs. ExPASy Swiss-Prot
Match: Q58FV0 (Protein DOG1-like 3 OS=Arabidopsis thaliana OX=3702 GN=DOGL3 PE=2 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 2.6e-20 Identity = 66/247 (26.72%), Postives = 118/247 (47.77%), Query Frame = 0
BLAST of CmoCh09G006520 vs. ExPASy Swiss-Prot
Match: A0SVK0 (Protein DELAY OF GERMINATION 1 OS=Arabidopsis thaliana OX=3702 GN=DOG1 PE=1 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.4e-16 Identity = 58/245 (23.67%), Postives = 110/245 (44.90%), Query Frame = 0
BLAST of CmoCh09G006520 vs. ExPASy Swiss-Prot
Match: Q9SLV1 (Protein ZW2 OS=Arabidopsis thaliana OX=3702 GN=ZW2 PE=2 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 5.7e-15 Identity = 69/244 (28.28%), Postives = 103/244 (42.21%), Query Frame = 0
BLAST of CmoCh09G006520 vs. ExPASy Swiss-Prot
Match: Q41558 (Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum OX=4565 PE=1 SV=2) HSP 1 Score: 82.4 bits (202), Expect = 7.4e-15 Identity = 55/203 (27.09%), Postives = 102/203 (50.25%), Query Frame = 0
BLAST of CmoCh09G006520 vs. ExPASy TrEMBL
Match: A0A6J1FCB7 (protein DOG1-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111442722 PE=4 SV=1) HSP 1 Score: 472.2 bits (1214), Expect = 1.2e-129 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
BLAST of CmoCh09G006520 vs. ExPASy TrEMBL
Match: A0A6J1IKW4 (protein DOG1-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111476548 PE=4 SV=1) HSP 1 Score: 466.5 bits (1199), Expect = 6.8e-128 Identity = 233/236 (98.73%), Postives = 235/236 (99.58%), Query Frame = 0
BLAST of CmoCh09G006520 vs. ExPASy TrEMBL
Match: A0A6J1C1F8 (protein DOG1-like 4 OS=Momordica charantia OX=3673 GN=LOC111007359 PE=4 SV=1) HSP 1 Score: 386.0 bits (990), Expect = 1.2e-103 Identity = 194/242 (80.17%), Postives = 209/242 (86.36%), Query Frame = 0
BLAST of CmoCh09G006520 vs. ExPASy TrEMBL
Match: A0A0A0L389 (DOG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G625020 PE=4 SV=1) HSP 1 Score: 375.2 bits (962), Expect = 2.1e-100 Identity = 191/231 (82.68%), Postives = 209/231 (90.48%), Query Frame = 0
BLAST of CmoCh09G006520 vs. ExPASy TrEMBL
Match: A0A5A7VNB0 (Transcription factor HBP-1b(C1) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00820 PE=4 SV=1) HSP 1 Score: 374.0 bits (959), Expect = 4.6e-100 Identity = 191/233 (81.97%), Postives = 204/233 (87.55%), Query Frame = 0
BLAST of CmoCh09G006520 vs. NCBI nr
Match: XP_022935985.1 (protein DOG1-like 4 [Cucurbita moschata]) HSP 1 Score: 472.2 bits (1214), Expect = 2.5e-129 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
BLAST of CmoCh09G006520 vs. NCBI nr
Match: KAG7024648.1 (Protein DOG1-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 468.4 bits (1204), Expect = 3.7e-128 Identity = 233/236 (98.73%), Postives = 236/236 (100.00%), Query Frame = 0
BLAST of CmoCh09G006520 vs. NCBI nr
Match: XP_022976023.1 (protein DOG1-like 4 [Cucurbita maxima]) HSP 1 Score: 466.5 bits (1199), Expect = 1.4e-127 Identity = 233/236 (98.73%), Postives = 235/236 (99.58%), Query Frame = 0
BLAST of CmoCh09G006520 vs. NCBI nr
Match: KAG6591766.1 (Protein DOG1-like 4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 460.7 bits (1184), Expect = 7.7e-126 Identity = 229/236 (97.03%), Postives = 233/236 (98.73%), Query Frame = 0
BLAST of CmoCh09G006520 vs. NCBI nr
Match: XP_023536480.1 (protein DOG1-like 4 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 455.3 bits (1170), Expect = 3.2e-124 Identity = 229/236 (97.03%), Postives = 232/236 (98.31%), Query Frame = 0
BLAST of CmoCh09G006520 vs. TAIR 10
Match: AT3G14880.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 250.4 bits (638), Expect = 1.5e-66 Identity = 122/227 (53.74%), Postives = 164/227 (72.25%), Query Frame = 0
BLAST of CmoCh09G006520 vs. TAIR 10
Match: AT3G14880.1 (BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 560 Blast hits to 560 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 243.4 bits (620), Expect = 1.8e-64 Identity = 122/234 (52.14%), Postives = 164/234 (70.09%), Query Frame = 0
BLAST of CmoCh09G006520 vs. TAIR 10
Match: AT4G18650.1 (transcription factor-related ) HSP 1 Score: 103.6 bits (257), Expect = 2.2e-22 Identity = 68/233 (29.18%), Postives = 111/233 (47.64%), Query Frame = 0
BLAST of CmoCh09G006520 vs. TAIR 10
Match: AT4G18690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18680.1); Has 522 Blast hits to 522 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 513; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 100.5 bits (249), Expect = 1.9e-21 Identity = 66/247 (26.72%), Postives = 118/247 (47.77%), Query Frame = 0
BLAST of CmoCh09G006520 vs. TAIR 10
Match: AT5G45830.1 (delay of germination 1 ) HSP 1 Score: 88.2 bits (217), Expect = 9.6e-18 Identity = 58/245 (23.67%), Postives = 110/245 (44.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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