CmoCh09G005880 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G005880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr09: 2896371 .. 2897130 (-)
RNA-Seq Expression	CmoCh09G005880
Synteny	CmoCh09G005880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGTAAACGGTGACGGAAACGACCAACAAACCGACCGGCAAACAACGAAGGGACAAAAACCGGCGGCTGCTGTGCCATGCAAGGGGGACTTTAAGGTTTGTCATTTCATTATAACAAACAAAAAAAATACATTTTTCAGGTTTGTCATATTGCTATTTTTATGCGAACTGCTCTTTGTTTTATCTCTCTGGACTTAGATGCTGAATCATCTGTTTGATTTTGTTCAGCAACATCAATCGCTCAAGAATCCCAGATTCATGCTCTCACGACTGTTGTCTAGGATCTTTCTTTCAGCATGTCAGGTAAATAGAAGGTTTGTGTAACATCTCTTTTACGCAAAATAATTTGCATATATAATTTTAATGTTTGTCTCAATGAGGTATAAATATGTTCCTATCACCTTGACACTAGTATCGATGGGTACTAATACGTCCAAATTCACAATCATTCTGGATGCAAATAGCAAAGCCAGTAATTCACTAGGTCTGTTCTTCTTATCCTAGTCAAATTTCTAAACCCTCCTCTCCTCCCCACCCCCACATTCCACAACATACTCGTACTAGCAATAACTGTGATGTGTAATACCTATTAGTCATCATCGTATCAGAATCTTTACTAATAGGAAATCTAGTAATTTGTGTTTCAACAAACATACATGATTCTTTAGCTAATATGTCTGATATCCAGAGGAAAGGAAAAATAATAGTTCTTGTGCTAAAGAATACCTTGACTTCAGAAGTCGAGTTCCCAAGCTGA

mRNA sequence

ATGAGGGTAAACGGTGACGGAAACGACCAACAAACCGACCGGCAAACAACGAAGGGACAAAAACCGGCGGCTGCTGTGCCATGCAAGGGGGACTTTAAGATGCTGAATCATCTGTTTGATTTTGTTCAGCAACATCAATCGCTCAAGAATCCCAGATTCATGCTCTCACGACTGTTGTCTAGGATCTTTCTTTCAGCATGTCAGAGGAAAGGAAAAATAATAGTTCTTGTGCTAAAGAATACCTTGACTTCAGAAGTCGAGTTCCCAAGCTGA

Coding sequence (CDS)

ATGAGGGTAAACGGTGACGGAAACGACCAACAAACCGACCGGCAAACAACGAAGGGACAAAAACCGGCGGCTGCTGTGCCATGCAAGGGGGACTTTAAGATGCTGAATCATCTGTTTGATTTTGTTCAGCAACATCAATCGCTCAAGAATCCCAGATTCATGCTCTCACGACTGTTGTCTAGGATCTTTCTTTCAGCATGTCAGAGGAAAGGAAAAATAATAGTTCTTGTGCTAAAGAATACCTTGACTTCAGAAGTCGAGTTCCCAAGCTGA

Protein sequence

MRVNGDGNDQQTDRQTTKGQKPAAAVPCKGDFKMLNHLFDFVQQHQSLKNPRFMLSRLLSRIFLSACQRKGKIIVLVLKNTLTSEVEFPS

Homology

[Close]

BLAST of CmoCh09G005880 vs. ExPASy TrEMBL
Match: A0A6J1F9H4 (uncharacterized protein LOC111443303 OS=Cucurbita moschata OX=3662 GN=LOC111443303 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30
Identity = 73/88 (82.95%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1  MRVNGDGNDQQTDRQTTKGQKPAAAVPCKGDFKMLNHLFDFVQQHQSLKNPRFMLSRLLS 60
          MRVNGDGNDQQTDRQTTKGQKPAAAVPCKGDFKMLNHLFDFVQQHQSLKNPRFMLSRLLS
Sbjct: 1  MRVNGDGNDQQTDRQTTKGQKPAAAVPCKGDFKMLNHLFDFVQQHQSLKNPRFMLSRLLS 60

Query: 61 RIFLSACQ--RKGKIIVLVLKNTLTSEV 87
          RIFLSACQ      + +L +K++L S V
Sbjct: 61 RIFLSACQVSTLWSVKLLKVKDSLHSSV 88

[Close]

BLAST of CmoCh09G005880 vs. NCBI nr
Match: XP_022936837.1 (uncharacterized protein LOC111443303 [Cucurbita moschata])

HSP 1 Score: 141.4 bits (355), Expect = 3.9e-30
Identity = 73/88 (82.95%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1  MRVNGDGNDQQTDRQTTKGQKPAAAVPCKGDFKMLNHLFDFVQQHQSLKNPRFMLSRLLS 60
          MRVNGDGNDQQTDRQTTKGQKPAAAVPCKGDFKMLNHLFDFVQQHQSLKNPRFMLSRLLS
Sbjct: 1  MRVNGDGNDQQTDRQTTKGQKPAAAVPCKGDFKMLNHLFDFVQQHQSLKNPRFMLSRLLS 60

Query: 61 RIFLSACQ--RKGKIIVLVLKNTLTSEV 87
          RIFLSACQ      + +L +K++L S V
Sbjct: 61 RIFLSACQVSTLWSVKLLKVKDSLHSSV 88

The following BLAST results are available for this feature:

BLAST of CmoCh09G005880 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh09G005880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9H4	1.9e-30	82.95	uncharacterized protein LOC111443303 OS=Cucurbita moschata OX=3662 GN=LOC1114433...	[more]

BLAST of CmoCh09G005880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936837.1	3.9e-30	82.95	uncharacterized protein LOC111443303 [Cucurbita moschata]	[more]

BLAST of CmoCh09G005880 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G005880.1	CmoCh09G005880.1	mRNA