CmoCh08G011860 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G011860
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	E3 ubiquitin-protein ligase Topors isoform X2
Location	Cmo_Chr08: 7540198 .. 7543171 (+)
RNA-Seq Expression	CmoCh08G011860
Synteny	CmoCh08G011860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGTGGGGAAAATCACGAAGCATTCGACCCCAGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGTGGAGAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTATCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCGTAGGGTGTATTCGCAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTCCAAAATCAAGCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGGACCGACGCTCGCAGGTGTGTGAGTATGTGTGTTTCTGTAACTCTGATATGTCTGTATGGCTGCTAATTTTGTTTTCAAATTGATCACTTCTGCTTGAATTGAACATATAAGCTAATACGGAGAACTGAGTGCTGTAGTTAGTTTTAATCGAGGACTGATTTGATCATTAAACTTGGAATTGTATTTTTTCCCCTCACTTTTATTTAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAGAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGCAAGGTAACTTCTGGGTTTAGAGCTTGAATGTTGTTGCTAATATTCCGTTGGGTTATGATCTGACACAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGGTATGCATTTTAATCCTTAACTACGAGTTATCTGATGATTTTATATGAAGTCTGGTTGCTGGTAGGATTTGATAAACTGATTCTTTCCTCTTTTAACTTTAAGTTTATTACCTCACATACAGCTCATGGGGCTAATCCCTTGCTTCAAAATTGAATTGGGGCACTTTTTTTCAACCAAATACATTGCCGAACTTTCTCTTTAGTTTTTCGTGTTAGTGAGAATTCGAAACTCTAGCCTTTTCAGTTGAGATATAAAATCTTAACCACTTGAGTTATACTCAACTTGTCGATTATGTAAATAATTAATAATTTTCTCTCTTCGGTTGCGTACAACGAAGGTGCAAATTCGGCATTGTGTACAAGTGCAATTCTGTCAGTTTAGTTCTTATTCTGTGTGCGTGAATGCGTGTTGTGCAGAACTTAACAGGAAGTCATGGAGTCAAAGAAGCAATACTAGAGAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTTCGCCTTTGCGTCCGTTCCTGTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGGTACTTTACTCACTGTTCAATATTTCAAGTTCTCGTGTTTTTTCTCTGATGCATCTAAATTTTGAAATGAATGTAAGATTTCTTGAGTATTGAGTTCTGGAAGCCCACTCACAGAAGTAGGATTTATTGAGAGTGTTGTTCACTGCTAGATTCGTAACAATACCATATACCAGAGAATTAGCGACCAGGAATTACAAGACCATTGTATCTTCCCTTAAACTGAAACCCAGTTGATTTGAAGTAAATTTTCCGTATTGCTCTCAATCTTTTTTGGTGCTCTTATCCCATTTGTTCCAAATGCCTCTAGCTCGAATGCAATAATATAACTAATCCCATCTCCTTTCAAGCAACGCCCGAGACTATCCTTGGATATTAATACCCGAGAATTTCCGACCAGGAATTGCATGACCATTGTCTCTGTCAGCTAAACCCAGATGATTTCAAGTAAATTTTCCATATTACTCAATTTTTTTTGGTTCCCTTGTCCCATTTGTACTGAATTCCTCTAGCTCGGATGCAATAATATAACTAATCCCCATCTCCTTTCAAGCAATGTCCCAGACTATCCTTGGCTATTGACTTACTGTATTAACTTGCTCGGAGCAACCCTCTTATATATGGAGTAAGAAAATGCAGGAATGGATTTTGATAGAATTCAGAGAAATGAAATGACTTACCAAACAAGAAAATACAGAAGAATGTCGAGTATTTTGAGAATCTTGGACCCCTCCCTCTTGGGTGTACTCGAGCACAAACAACTAAATTATATCTCGCCTTCATCCCCTCCTACTAGCGAAATTTATGATGGCCACCTATCTAAGAAATTAAAATATCACGAGTTCCTTTACAACATAATCACGACTGATTCACTCATAAAGCTCCCGCGAGTAGTGTTTGTTTCTTTATCACAATACAAGACTGCATCTTTTATGCTCATCATTTTTCTACTGCCATTTTTATTTAGAAAGTTTTCCTCTCAGATGTTTTGCAGGAAGTTCATTACGCATGGAAGAGTATGATTCTGTGGTTGAATATAGAACCATGGATTAATTGTAGCGAAGAATCTGTTTGAAGAGGTATGTTATACTCATGACTCTCTCCTGTGGGTAGCTGGTTATATTTGAAATGAATTGACATAATACGAAGAAAATGTAATAGCAAGGGACGAGAATCGTGGCATGGATGCAATTTCATATTCTTACATTATCCTGGATGAAAGAACTAAGATATCTTCTGCTGCCGAAGATTTTAAACACGATCTGCAGTTCGGGTGTGTTAGTTTGGTGCATCGTTTCCCACAAGTCGCTTACATTGTTTTCTCAATGATTTCCATTCGACCTGCAAATCATTCAGGAGAAGACTGTTTGAGGATACATTTTAGTACTGATCTTCTCTCTGGTTGTGGGATGATCTCCCCAACAACGAATGGACTGGAGTCGTTGCTCGATCGGGGTCGTTTTTCTAGTCTGATCTGGAAGAAAGACACTTGGAAACTGAGATTATGTAGCCTGCACGCCACCACATAAGGCTCTGAAGATAGTATTATTATTCATACGTTGTATTTCTTTTGCACCCAAATCGTCTCGTTAAAT

mRNA sequence

ATGCTGGTGGGGAAAATCACGAAGCATTCGACCCCAGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGTGGAGAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTATCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCGTAGGGTGTATTCGCAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTCCAAAATCAAGCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGGACCGACGCTCGCAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAGAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGCAAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGAACTTAACAGGAAGTCATGGAGTCAAAGAAGCAATACTAGAGAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTTCGCCTTTGCGTCCGTTCCTGTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGATGTTTTGCAGGAAGTTCATTACGCATGGAAGAGTATGATTCTGTGGTTGAATATAGAACCATGGATTAATTGTAGCGAAGAATCTGTTTGAAGAGCAAGGGACGAGAATCGTGGCATGGATGCAATTTCATATTCTTACATTATCCTGGATGAAAGAACTAAGATATCTTCTGCTGCCGAAGATTTTAAACACGATCTGCAGTTCGGGTGTGTTAGTTTGGTGCATCGTTTCCCACAAGTCGCTTACATTGTTTTCTCAATGATTTCCATTCGACCTGCAAATCATTCAGGAGAAGACTGTTTGAGGATACATTTTAGTACTGATCTTCTCTCTGGTTGTGGGATGATCTCCCCAACAACGAATGGACTGGAGTCGTTGCTCGATCGGGGTCGTTTTTCTAGTCTGATCTGGAAGAAAGACACTTGGAAACTGAGATTATGTAGCCTGCACGCCACCACATAAGGCTCTGAAGATAGTATTATTATTCATACGTTGTATTTCTTTTGCACCCAAATCGTCTCGTTAAAT

Coding sequence (CDS)

ATGCTGGTGGGGAAAATCACGAAGCATTCGACCCCAGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGTGGAGAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTATCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCGTAGGGTGTATTCGCAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTCCAAAATCAAGCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGGACCGACGCTCGCAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAGAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGCAAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGAACTTAACAGGAAGTCATGGAGTCAAAGAAGCAATACTAGAGAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTTCGCCTTTGCGTCCGTTCCTGTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGATGTTTTGCAGGAAGTTCATTACGCATGGAAGAGTATGATTCTGTGGTTGAATATAGAACCATGGATTAA

Protein sequence

MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYCVGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVPSSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD

Homology

[Close]

BLAST of CmoCh08G011860 vs. ExPASy Swiss-Prot
Match: Q80Z37 (E3 ubiquitin-protein ligase Topors OS=Mus musculus OX=10090 GN=Topors PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-11
Identity = 70/281 (24.91%), Postives = 109/281 (38.79%), Query Frame = 0


Query: 37  CPICLRELEDRIAAVLTTCIHAYCVGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFR 96
           CPICL   ++   + L  C+H +C  C+++WS  K  CPLC   FDS F  ++       
Sbjct: 104 CPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDSIFHSVRAEDDFKE 163

Query: 97  KERLPNLNCA-DNLKIGIGSSRTDARR----ILQSTRNELSRDRR--------------S 156
               P+ N +  N ++     RT   R     L S  + +SR                 S
Sbjct: 164 YVLRPSYNGSFTNPEVRRFRYRTTMTRERSASLYSPSSTVSRRTTTPPDSGVLFEGLGIS 223

Query: 157 ERPL-----TWRRSFGRRGPESV---------PTDVIAWRKLQWRASIYDRRIQAVPSSV 216
            RP       + R    RGP +            D+I +R+  +RA +   R++++    
Sbjct: 224 TRPRDVDIPQFMRQMALRGPTTTDERSLRKIQEQDIINFRRTLYRAGV---RVRSIEDGG 283

Query: 217 RSCLVMNLTGSHGVKE-AILERIKPWIQREL----------------------------- 255
           R     +++     +  A L R+ PW++REL                             
Sbjct: 284 R---YRDISAEFFRRNPACLHRLVPWLKRELTVLFGAHGSLVNIVQHIIMSNVTRYDLES 343

[Close]

BLAST of CmoCh08G011860 vs. ExPASy Swiss-Prot
Match: Q9NS56 (E3 ubiquitin-protein ligase Topors OS=Homo sapiens OX=9606 GN=TOPORS PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-09
Identity = 73/288 (25.35%), Postives = 103/288 (35.76%), Query Frame = 0


Query: 37  CPICLRELEDRIAAVLTTCIHAYCVGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFR 96
           CPICL   ++   + L  C+H +C  C+++WS  K  CPLC   FDS F  ++       
Sbjct: 103 CPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDSIFHSVRAEDDFKE 162

Query: 97  KERLPNLNCADNLKIGIGSSRTDARRILQSTRNELSRDRR-------------------- 156
               P+ N         GS  T  RR     R  L+R+R                     
Sbjct: 163 YVLRPSYN---------GSFVTPDRRF--RYRTTLTRERNASVYSPSGPVNRRTTTPPDS 222

Query: 157 ---------SERPL-----TWRRSFGRRGPESV---------PTDVIAWRKLQWRASIYD 216
                    S RP       + R    R P +            D+I +R+  +RA    
Sbjct: 223 GVLFEGLGISTRPRDVEIPQFMRQIAVRRPTTADERSLRKIQEQDIINFRRTLYRAGARV 282

Query: 217 RRIQ----------------------AVPSSVRSCLVMNLTGSHG-----VKEAILERIK 255
           R I+                       VP   R   V  L G+HG     V+  I+  + 
Sbjct: 283 RNIEDGGRYRDISAEFFRRNPACLHRLVPWLKRELTV--LFGAHGSLVNIVQHIIMSNVT 342

[Close]

BLAST of CmoCh08G011860 vs. ExPASy Swiss-Prot
Match: P08393 (E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 1 (strain 17) OX=10299 GN=ICP0 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.3e-06
Identity = 17/47 (36.17%), Postives = 28/47 (59.57%), Query Frame = 0


Query: 34  GETCPICLRELEDRIAAVLTTCIHAYCVGCIRKWSNLKRTCPLCNAQ 81
           G+ C +C  E+   +      C+H +C+ C++ W  L+ TCPLCNA+
Sbjct: 113 GDVCAVCTDEIAPHLRCDTFPCMHRFCIPCMKTWMQLRNTCPLCNAK 159

[Close]

BLAST of CmoCh08G011860 vs. ExPASy Swiss-Prot
Match: P28284 (E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 2 (strain HG52) OX=10315 GN=RL2 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.8e-05
Identity = 16/45 (35.56%), Postives = 26/45 (57.78%), Query Frame = 0


Query: 34  GETCPICLRELEDRIAAVLTTCIHAYCVGCIRKWSNLKRTCPLCN 79
           G+ C +C  E+   +      C+H +C+ C++ W  L+ TCPLCN
Sbjct: 123 GDVCAVCTDEIAPPLRCQSFPCLHPFCIPCMKTWIPLRNTCPLCN 167

[Close]

BLAST of CmoCh08G011860 vs. ExPASy Swiss-Prot
Match: Q5BIY5 (RING finger protein 145 OS=Xenopus laevis OX=8355 GN=rnf145 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.3e-04
Identity = 19/49 (38.78%), Postives = 31/49 (63.27%), Query Frame = 0


Query: 35  ETCPICLRELEDRIAAVLTTCIHAYCVGCIRKWSNLKRTCPLCNAQFDS 84
           + C IC +++    +AV+T C H +  GC++KW  ++ TCPLC+ Q  S
Sbjct: 535 DICSICYQDMN---SAVITPCSHFFHPGCLKKWLYVQETCPLCHCQLKS 580

[Close]

BLAST of CmoCh08G011860 vs. ExPASy TrEMBL
Match: A0A6J1EUW6 (E3 ubiquitin-protein ligase Topors isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436818 PE=4 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 3.8e-148
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60
           MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC
Sbjct: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60

Query: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120
           VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180

Query: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILSPLRPFLYEKTDLFWHELRCFAG 240
           SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILSPLRPFLYEKTDLFWHELRCFAG
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILSPLRPFLYEKTDLFWHELRCFAG 240

Query: 241 SSLRMEEYDSVVEYRTMD 259
           SSLRMEEYDSVVEYRTMD
Sbjct: 241 SSLRMEEYDSVVEYRTMD 258

[Close]

BLAST of CmoCh08G011860 vs. ExPASy TrEMBL
Match: A0A6J1KC79 (E3 ubiquitin-protein ligase Topors isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111494293 PE=4 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 1.3e-143
Identity = 251/258 (97.29%), Postives = 252/258 (97.67%), Query Frame = 0


Query: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60
           ML GKI KHST EPARKLNGENFVVKVISPAICG+TCPICLRELEDR AAVLTTCIHAYC
Sbjct: 1   MLEGKIMKHSTGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYC 60

Query: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120
           VGCIRKWSNLKRTCPLCNAQFDSWF KI LSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180

Query: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILSPLRPFLYEKTDLFWHELRCFAG 240
           SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILSPLRPFLYEKTDLFWHELRCFAG
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILSPLRPFLYEKTDLFWHELRCFAG 240

Query: 241 SSLRMEEYDSVVEYRTMD 259
           SSLRMEEYDSVVEYRTMD
Sbjct: 241 SSLRMEEYDSVVEYRTMD 258

[Close]

BLAST of CmoCh08G011860 vs. ExPASy TrEMBL
Match: A0A6J1EQ79 (E3 ubiquitin-protein ligase Topors isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436818 PE=4 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 6.2e-143
Identity = 258/292 (88.36%), Postives = 258/292 (88.36%), Query Frame = 0


Query: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60
           MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC
Sbjct: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60

Query: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120
           VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180

Query: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAI------------------------ 240
           SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAI                        
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 240

Query: 241 ----------LSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 259
                     LSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD
Sbjct: 241 SSQLNAENDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 292

[Close]

BLAST of CmoCh08G011860 vs. ExPASy TrEMBL
Match: A0A6J1KEK6 (E3 ubiquitin-protein ligase Topors isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494293 PE=4 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.1e-138
Identity = 251/292 (85.96%), Postives = 252/292 (86.30%), Query Frame = 0


Query: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60
           ML GKI KHST EPARKLNGENFVVKVISPAICG+TCPICLRELEDR AAVLTTCIHAYC
Sbjct: 1   MLEGKIMKHSTGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYC 60

Query: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120
           VGCIRKWSNLKRTCPLCNAQFDSWF KI LSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180

Query: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAI------------------------ 240
           SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAI                        
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 240

Query: 241 ----------LSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 259
                     LSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD
Sbjct: 241 SSQLNAENDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 292

[Close]

BLAST of CmoCh08G011860 vs. ExPASy TrEMBL
Match: A0A1S3C7X8 (E3 ubiquitin-protein ligase Topors OS=Cucumis melo OX=3656 GN=LOC103497872 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.1e-112
Identity = 204/282 (72.34%), Postives = 226/282 (80.14%), Query Frame = 0


Query: 10  STPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYCVGCIRKWSN 69
           ST EPARKLNGENF+ KVISPAICGETCPICLRELEDR AAVLTTCIHAYC+GCIRKWSN
Sbjct: 6   STREPARKLNGENFITKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSN 65

Query: 70  LKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRN 129
           LKRTCPLCNAQFDSWF+KI LSS+SFRKERL   NC++ LK+G+GSS+TDAR ILQSTR 
Sbjct: 66  LKRTCPLCNAQFDSWFTKINLSSQSFRKERLKTSNCSEKLKVGVGSSQTDARGILQSTRY 125

Query: 130 ELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVPSSVRSCLVM 189
           EL+R+RRSER LTWRRSFGRRGP+S+P DV+  RKLQWRASIY+R IQAVPSSVRSCL +
Sbjct: 126 ELNRERRSERSLTWRRSFGRRGPDSLPADVVVRRKLQWRASIYNRCIQAVPSSVRSCLEL 185

Query: 190 NLTGSHGVKEAILERIKPWIQRELEAI--------------------------------- 249
           N+ G+ G KE ILERIKPWIQREL+ I                                 
Sbjct: 186 NILGNRGGKEVILERIKPWIQRELQVILEDPDPTIIVHLVISLFVARLEATSSQLNAEDD 245

Query: 250 -LSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTM 258
            LSPLRPFL+EKTDLFWHELRCFAGS LRMEEYDSVVEYR++
Sbjct: 246 FLSPLRPFLFEKTDLFWHELRCFAGSPLRMEEYDSVVEYRSV 287

[Close]

BLAST of CmoCh08G011860 vs. NCBI nr
Match: XP_022930348.1 (E3 ubiquitin-protein ligase Topors isoform X2 [Cucurbita moschata])

HSP 1 Score: 533.9 bits (1374), Expect = 7.8e-148
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60
           MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC
Sbjct: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60

Query: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120
           VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180

Query: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILSPLRPFLYEKTDLFWHELRCFAG 240
           SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILSPLRPFLYEKTDLFWHELRCFAG
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILSPLRPFLYEKTDLFWHELRCFAG 240

Query: 241 SSLRMEEYDSVVEYRTMD 259
           SSLRMEEYDSVVEYRTMD
Sbjct: 241 SSLRMEEYDSVVEYRTMD 258

[Close]

BLAST of CmoCh08G011860 vs. NCBI nr
Match: XP_022999967.1 (E3 ubiquitin-protein ligase Topors isoform X2 [Cucurbita maxima])

HSP 1 Score: 518.8 bits (1335), Expect = 2.6e-143
Identity = 251/258 (97.29%), Postives = 252/258 (97.67%), Query Frame = 0


Query: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60
           ML GKI KHST EPARKLNGENFVVKVISPAICG+TCPICLRELEDR AAVLTTCIHAYC
Sbjct: 1   MLEGKIMKHSTGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYC 60

Query: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120
           VGCIRKWSNLKRTCPLCNAQFDSWF KI LSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180

Query: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILSPLRPFLYEKTDLFWHELRCFAG 240
           SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILSPLRPFLYEKTDLFWHELRCFAG
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILSPLRPFLYEKTDLFWHELRCFAG 240

Query: 241 SSLRMEEYDSVVEYRTMD 259
           SSLRMEEYDSVVEYRTMD
Sbjct: 241 SSLRMEEYDSVVEYRTMD 258

[Close]

BLAST of CmoCh08G011860 vs. NCBI nr
Match: XP_022930345.1 (E3 ubiquitin-protein ligase Topors isoform X1 [Cucurbita moschata] >XP_022930347.1 E3 ubiquitin-protein ligase Topors isoform X1 [Cucurbita moschata])

HSP 1 Score: 516.5 bits (1329), Expect = 1.3e-142
Identity = 258/292 (88.36%), Postives = 258/292 (88.36%), Query Frame = 0


Query: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60
           MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC
Sbjct: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60

Query: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120
           VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180

Query: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAI------------------------ 240
           SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAI                        
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 240

Query: 241 ----------LSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 259
                     LSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD
Sbjct: 241 SSQLNAENDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 292

[Close]

BLAST of CmoCh08G011860 vs. NCBI nr
Match: KAG6593954.1 (E3 ubiquitin-protein ligase Topors, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 502.3 bits (1292), Expect = 2.5e-138
Identity = 252/292 (86.30%), Postives = 252/292 (86.30%), Query Frame = 0


Query: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60
           MLVGKI  HST EPARKL GENFVVKVISPAICGETCPICLRELEDR AAVLTTCIHAYC
Sbjct: 1   MLVGKIMNHSTREPARKLYGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYC 60

Query: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120
           VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQA P
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAAP 180

Query: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAI------------------------ 240
           SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAI                        
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 240

Query: 241 ----------LSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 259
                     LSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD
Sbjct: 241 SSQLNAENDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 292

[Close]

BLAST of CmoCh08G011860 vs. NCBI nr
Match: XP_022999966.1 (E3 ubiquitin-protein ligase Topors isoform X1 [Cucurbita maxima])

HSP 1 Score: 501.5 bits (1290), Expect = 4.3e-138
Identity = 251/292 (85.96%), Postives = 252/292 (86.30%), Query Frame = 0


Query: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60
           ML GKI KHST EPARKLNGENFVVKVISPAICG+TCPICLRELEDR AAVLTTCIHAYC
Sbjct: 1   MLEGKIMKHSTGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYC 60

Query: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120
           VGCIRKWSNLKRTCPLCNAQFDSWF KI LSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180

Query: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAI------------------------ 240
           SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAI                        
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 240

Query: 241 ----------LSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 259
                     LSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD
Sbjct: 241 SSQLNAENDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 292

[Close]

BLAST of CmoCh08G011860 vs. TAIR 10
Match: AT2G39100.1 (RING/U-box superfamily protein )

HSP 1 Score: 219.5 bits (558), Expect = 3.0e-57
Identity = 127/293 (43.34%), Postives = 163/293 (55.63%), Query Frame = 0


Query: 10  STPEPARKLNGENFVVK----VISPAICGETCPICLREL-EDRIAAVLTTCIHAYCVGCI 69
           + P  +R L     + K     I PA+ G++CPICL  L E R AAV+T C H YC+ CI
Sbjct: 8   TAPSSSRHLRSPESIAKFAGRAIFPALQGKSCPICLENLTERRSAAVITVCKHGYCLACI 67

Query: 70  RKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRIL 129
           RKWS+ KR CPLCN +FDSWF     +SR + KE+LP L   + L     ++ +D RRI+
Sbjct: 68  RKWSSFKRNCPLCNTRFDSWFIVSDFASRKYHKEQLPILRDRETLTYH-RNNPSDRRRII 127

Query: 130 QSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVPSSVR 189
           Q +R+ L       RPL WRRSFGR  P SVP  VI  RKLQWRASIY ++++AV    R
Sbjct: 128 QRSRDVLENSSSRSRPLPWRRSFGR--PGSVPDSVIFQRKLQWRASIYTKQLRAVRLHSR 187

Query: 190 SCLVMNLTGSHGVKEAILERIKPWIQRELEAIL--------------------------- 249
             L ++L  +   K  I ERI+PWI+REL+A+L                           
Sbjct: 188 R-LELSLAVNDYTKAKITERIEPWIRRELQAVLGDPDPSVIVHFASALFIKRLERENNRQ 247

Query: 250 ------------SPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 259
                       S LR FL +K D+FWHELRCFA S L ME YD+VVEY  ++
Sbjct: 248 TGQTGMLVEDEVSSLRKFLSDKVDIFWHELRCFAESILTMETYDAVVEYNEVE 296

[Close]

BLAST of CmoCh08G011860 vs. TAIR 10
Match: AT5G12310.1 (RING/U-box superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 7.1e-06
Identity = 22/51 (43.14%), Postives = 29/51 (56.86%), Query Frame = 0


Query: 34 GETCPICLRELEDRIAAVLTTCIHAYCVGCIRKWSNLKR--TCPLCNAQFD 83
          G  C ICL  +  +  A++  C HAYCV CI +W++ K   TCP C   FD
Sbjct: 40 GGCCAICLDTIPLQETAMVKGCEHAYCVTCILRWASYKEKPTCPQCKLPFD 90

[Close]

BLAST of CmoCh08G011860 vs. TAIR 10
Match: AT2G20030.1 (RING/U-box superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-05
Identity = 34/102 (33.33%), Postives = 47/102 (46.08%), Query Frame = 0


Query: 34  GETCPICLRELED-RIAAVLTTCIHAYCVGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSS 93
           G  C +CL + ED  I  +L  C HA+ +GCI +W     TCPLC  +            
Sbjct: 121 GLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNR------------ 180

Query: 94  RSFRKERLPNLNCADNLKIGIGSSRTDARRILQS-TRNELSR 134
                     +N  D+L + +G+S T  R + QS TR E SR
Sbjct: 181 ----------VNIEDDLSV-LGNSSTSLRILNQSETREEDSR 199

[Close]

BLAST of CmoCh08G011860 vs. TAIR 10
Match: AT1G18770.1 (RING/U-box superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 4.6e-05
Identity = 23/68 (33.82%), Postives = 33/68 (48.53%), Query Frame = 0


Query: 12 PEPARKLNGENFVVKV--ISPAICGETCPICLRELEDRIAAVLTTCIHAYCVGCIRKWSN 71
          P PA KL  ++   K+  ++ +  GE C ICL E  +    V   C H +   C+ KW  
Sbjct: 32 PTPASKLVVKSLARKIYKMTTSSTGEMCIICLEEFSEGRRVVTLPCGHDFDDECVLKWFE 91

Query: 72 LKRTCPLC 78
             +CPLC
Sbjct: 92 TNHSCPLC 99

[Close]

BLAST of CmoCh08G011860 vs. TAIR 10
Match: AT2G35420.1 (RING/U-box superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 6.0e-05
Identity = 19/50 (38.00%), Postives = 25/50 (50.00%), Query Frame = 0


Query: 34  GETCPICLRELEDR-IAAVLTTCIHAYCVGCIRKWSNLKRTCPLCNAQFD 83
           G  C ICL E  D     ++T C H +   CI  W  L +TCP+C  + D
Sbjct: 100 GTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRCELD 149

The following BLAST results are available for this feature:

BLAST of CmoCh08G011860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q80Z37	3.2e-11	24.91	E3 ubiquitin-protein ligase Topors OS=Mus musculus OX=10090 GN=Topors PE=1 SV=1	[more]
Q9NS56	1.0e-09	25.35	E3 ubiquitin-protein ligase Topors OS=Homo sapiens OX=9606 GN=TOPORS PE=1 SV=1	[more]
P08393	5.3e-06	36.17	E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 1 (strain 17) OX=10299 GN=...	[more]
P28284	5.8e-05	35.56	E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 2 (strain HG52) OX=10315 G...	[more]
Q5BIY5	1.3e-04	38.78	RING finger protein 145 OS=Xenopus laevis OX=8355 GN=rnf145 PE=2 SV=1	[more]

BLAST of CmoCh08G011860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EUW6	3.8e-148	100.00	E3 ubiquitin-protein ligase Topors isoform X2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1KC79	1.3e-143	97.29	E3 ubiquitin-protein ligase Topors isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EQ79	6.2e-143	88.36	E3 ubiquitin-protein ligase Topors isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1KEK6	2.1e-138	85.96	E3 ubiquitin-protein ligase Topors isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A1S3C7X8	1.1e-112	72.34	E3 ubiquitin-protein ligase Topors OS=Cucumis melo OX=3656 GN=LOC103497872 PE=4 ...	[more]

BLAST of CmoCh08G011860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930348.1	7.8e-148	100.00	E3 ubiquitin-protein ligase Topors isoform X2 [Cucurbita moschata]	[more]
XP_022999967.1	2.6e-143	97.29	E3 ubiquitin-protein ligase Topors isoform X2 [Cucurbita maxima]	[more]
XP_022930345.1	1.3e-142	88.36	E3 ubiquitin-protein ligase Topors isoform X1 [Cucurbita moschata] >XP_022930347...	[more]
KAG6593954.1	2.5e-138	86.30	E3 ubiquitin-protein ligase Topors, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022999966.1	4.3e-138	85.96	E3 ubiquitin-protein ligase Topors isoform X1 [Cucurbita maxima]	[more]

BLAST of CmoCh08G011860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39100.1	3.0e-57	43.34	RING/U-box superfamily protein	[more]
AT5G12310.1	7.1e-06	43.14	RING/U-box superfamily protein	[more]
AT2G20030.1	1.2e-05	33.33	RING/U-box superfamily protein	[more]
AT1G18770.1	4.6e-05	33.82	RING/U-box superfamily protein	[more]
AT2G35420.1	6.0e-05	38.00	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 37..77 e-value: 9.4E-7 score: 38.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 36..78 e-value: 4.5E-9 score: 36.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 37..78 score: 13.005633
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 32..97 e-value: 1.7E-13 score: 51.7
None	No IPR available	PANTHER	PTHR46077	E3 UBIQUITIN-PROTEIN LIGASE TOPORS	coord: 28..255
None	No IPR available	PANTHER	PTHR46077:SF1	TOPOISOMERASE I-BINDING, ARGININE/SERINE-RICH A-RELATED	coord: 28..255
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 32..85
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 55..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G011860.1	CmoCh08G011860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0046872	metal ion binding