CmoCh08G010900 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G010900
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Auxin-responsive protein
Location	Cmo_Chr08: 7001953 .. 7002851 (+)
RNA-Seq Expression	CmoCh08G010900
Synteny	CmoCh08G010900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAAAAGAAATGGATTCCAAGCCCTCCGATCTCAATCTCGGAGCCACCGAGCTCCGCCTCGGCCTACCAGGAACCGCCGCCGAAAGCGACGGCTCTGCAGACAACTCTTCTGGGGTTCGAACTAACAAGAGAAATTTACAGAACGACTCTGCTCCTCCACCCAAGTATGTGCCGTTTTCGATTATGACTCTCGTTATGGTTTTTGGGGCTCTGTTTTGATTCTCAATTTGGGTTTTGTAGGTCTCAGGTTGTTGGGTGGCCGCCGATTAGATCCTTTAGGAAAAATACTCTGCTGCCAAAGAAAACAGAGTCAACCACGGCGGCGGAGGGCGGAGGGATTTATGTGAAAGTGAGTATGGATGGAGCTCCTTATTTGAGGAAGATCGATGTGGGTCTCTACAAGGGGTACCCTGAACTTCTCAAGGGTTTAGAGGAGATGTTCAAGATCAGAATCGGGGCATACTGTGAAAGCGAAGGTTACCGGGGATCGGATTATGCCCCAACTTACGAAGATAAAGACGGAGATTGGATGCTGGTGGGCGATGTTCCATGGCGGTGAGTTTTTCTAATAATTCCCTGAAATTCCAAATCTGTATTTTAATTAAATTCATGAGCTTATTTGATTTGGTGATGAATTAAATGCAGGATGTTTATTTCGTCGTGCAAGAGGATGAGAATCATGAAAGGATCAGAAGTTGGGGGACTGAGAAATTAACACCTTTTTTTTTTTAATTTACAGAACGATATGGATGAATTTTTCTTCATTTTTTCTTTTTGTTTTTAAGTTTTGTAAGATAAATTAGCTGATGAAATCAAATTGTAATTAACATATACTTTTATTACTATATACATTCCCGAAGCCTCTTTATGGAGTGTTGTAATTA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAGAAATGGATTCCAAGCCCTCCGATCTCAATCTCGGAGCCACCGAGCTCCGCCTCGGCCTACCAGGAACCGCCGCCGAAAGCGACGGCTCTGCAGACAACTCTTCTGGGGTTCGAACTAACAAGAGAAATTTACAGAACGACTCTGCTCCTCCACCCAAGTCTCAGGTTGTTGGGTGGCCGCCGATTAGATCCTTTAGGAAAAATACTCTGCTGCCAAAGAAAACAGAGTCAACCACGGCGGCGGAGGGCGGAGGGATTTATGTGAAAGTGAGTATGGATGGAGCTCCTTATTTGAGGAAGATCGATGTGGGTCTCTACAAGGGGTACCCTGAACTTCTCAAGGGTTTAGAGGAGATGTTCAAGATCAGAATCGGGGCATACTGTGAAAGCGAAGGTTACCGGGGATCGGATTATGCCCCAACTTACGAAGATAAAGACGGAGATTGGATGCTGGTGGGCGATGTTCCATGGCGGATGTTTATTTCGTCGTGCAAGAGGATGAGAATCATGAAAGGATCAGAAGTTGGGGGACTGAGAAATTAACACCTTTTTTTTTTTAATTTACAGAACGATATGGATGAATTTTTCTTCATTTTTTCTTTTTGTTTTTAAGTTTTGTAAGATAAATTAGCTGATGAAATCAAATTGTAATTAACATATACTTTTATTACTATATACATTCCCGAAGCCTCTTTATGGAGTGTTGTAATTA

Coding sequence (CDS)

ATGGATTCCAAGCCCTCCGATCTCAATCTCGGAGCCACCGAGCTCCGCCTCGGCCTACCAGGAACCGCCGCCGAAAGCGACGGCTCTGCAGACAACTCTTCTGGGGTTCGAACTAACAAGAGAAATTTACAGAACGACTCTGCTCCTCCACCCAAGTCTCAGGTTGTTGGGTGGCCGCCGATTAGATCCTTTAGGAAAAATACTCTGCTGCCAAAGAAAACAGAGTCAACCACGGCGGCGGAGGGCGGAGGGATTTATGTGAAAGTGAGTATGGATGGAGCTCCTTATTTGAGGAAGATCGATGTGGGTCTCTACAAGGGGTACCCTGAACTTCTCAAGGGTTTAGAGGAGATGTTCAAGATCAGAATCGGGGCATACTGTGAAAGCGAAGGTTACCGGGGATCGGATTATGCCCCAACTTACGAAGATAAAGACGGAGATTGGATGCTGGTGGGCGATGTTCCATGGCGGATGTTTATTTCGTCGTGCAAGAGGATGAGAATCATGAAAGGATCAGAAGTTGGGGGACTGAGAAATTAA

Protein sequence

MDSKPSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPPIRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFKIRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN

Homology

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BLAST of CmoCh08G010900 vs. ExPASy Swiss-Prot
Match: P32294 (Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-58
Identity = 114/192 (59.38%), Postives = 135/192 (70.31%), Query Frame = 0


Query: 6   SDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKR--------------------NLQN 65
           SDLNL ATELRLGLPGT  + D +    + +R NKR                    +++ 
Sbjct: 9   SDLNLKATELRLGLPGTEEKEDNNLRTHAVLRNNKRQVRETSQDSVSISKASHHQQHVET 68

Query: 66  DSAPPPKSQVVGWPPIRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLY 125
            SAPPPK+++VGWPPIRS+RKN        S    EG GI+VKVSMDGAPYLRK+D+ +Y
Sbjct: 69  VSAPPPKAKIVGWPPIRSYRKN--------SVQEGEGDGIFVKVSMDGAPYLRKVDLKVY 128

Query: 126 KGYPELLKGLEEMFKIRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKR 178
            GYPELLK LE MFK+ IG Y E EGY+GS+YAPTYEDKDGDWMLVGDVPW MF++SCKR
Sbjct: 129 GGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKR 188

[Close]

BLAST of CmoCh08G010900 vs. ExPASy Swiss-Prot
Match: P33077 (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2)

HSP 1 Score: 221.9 bits (564), Expect = 6.0e-57
Identity = 109/175 (62.29%), Postives = 133/175 (76.00%), Query Frame = 0


Query: 8   LNLGATELRLGLPGT-AAESDGSADNSSGVRTNKRNLQN----DSAPPPKSQVVGWPPIR 67
           +NL ATELRLGLPGT    S G ++        ++ +++    ++A PPK+Q+VGWPP+R
Sbjct: 11  VNLKATELRLGLPGTEETVSCGKSNKRVLPEATEKEIESTGKTETASPPKAQIVGWPPVR 70

Query: 68  SFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFKIR 127
           S+RKN +  KK+ES    EG G YVKVSMDGAPYLRKID+ +YK YPEL+K LE MFK  
Sbjct: 71  SYRKNNVQTKKSES----EGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFKFS 130

Query: 128 IGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGL 178
           +G Y E EGY+GSD+ PTYEDKDGDWMLVGDVPW MF+SSCKR+RIMKGSEV GL
Sbjct: 131 VGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGL 181

[Close]

BLAST of CmoCh08G010900 vs. ExPASy Swiss-Prot
Match: O24542 (Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-55
Identity = 113/189 (59.79%), Postives = 132/189 (69.84%), Query Frame = 0


Query: 1   MDSKPSDLNLGATELRLGLPGT----AAESDGSADNSSGVRTNKRNLQNDS--------A 60
           + S   +LNL ATELRLGLPG+       +  S   SS   +++ ++ N S         
Sbjct: 5   LGSYEKELNLKATELRLGLPGSDEPEKRATARSNKRSSPEASDEESISNGSDVTKEDNVV 64

Query: 61  PPPKSQVVGWPPIRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGY 120
           PP K+QVVGWPPIRS+RKN +  KK E    +EG G+YVKVSM GAPYLRKID+ +YK Y
Sbjct: 65  PPAKAQVVGWPPIRSYRKNNVQQKKEEE---SEGNGMYVKVSMAGAPYLRKIDLKVYKSY 124

Query: 121 PELLKGLEEMFKIRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRI 178
           PELLK LE MFK   G Y E EGY GS+YAPTYEDKDGDWMLVGDVPW MF+SSCKR+RI
Sbjct: 125 PELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRI 184

[Close]

BLAST of CmoCh08G010900 vs. ExPASy Swiss-Prot
Match: Q38822 (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-55
Identity = 109/183 (59.56%), Postives = 126/183 (68.85%), Query Frame = 0


Query: 8   LNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQND-------------SAPPPKSQ 67
           +NL  TELRLGLPGT    +     S     NKR L  D             ++PP K+Q
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQ 64

Query: 68  VVGWPPIRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKG 127
           +VGWPP+RS+RKN +  KK ES    EG GIYVKVSMDGAPYLRKID+  YKGY ELLK 
Sbjct: 65  IVGWPPVRSYRKNNIQSKKNES--EHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKA 124

Query: 128 LEEMFKIRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEV 178
           LE MFK  +G Y E +GY+GSD+ PTYEDKDGDWML+GDVPW MFI +CKR+RIMKGSE 
Sbjct: 125 LEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEA 184

[Close]

BLAST of CmoCh08G010900 vs. ExPASy Swiss-Prot
Match: O24543 (Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.8e-54
Identity = 114/203 (56.16%), Postives = 135/203 (66.50%), Query Frame = 0


Query: 1   MDSKPSDLNLGATELRLGLPGTAAESD-----GSADNSSGVRTN--------KRNLQNDS 60
           M S  ++LNL ATELRLGLPG+    +     GS   SS  R++        K N+ +DS
Sbjct: 1   MGSYETELNLRATELRLGLPGSDEPQEKRPCSGSVVRSSNKRSSPELEESRCKSNINSDS 60

Query: 61  A-------------PPPKSQVVGWPPIRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGA 120
           +              P K QVVGWPPIRSFRKN+L  KK E     +G G+Y+KVSM GA
Sbjct: 61  SDSTTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQ---GDGTGMYLKVSMAGA 120

Query: 121 PYLRKIDVGLYKGYPELLKGLEEMFKIRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDV 178
           PYLRKID+ +YK YPELLK L+ +FK   G Y E EGY GS+YAPTYEDKDGDWMLVGDV
Sbjct: 121 PYLRKIDLKVYKSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDV 180

[Close]

BLAST of CmoCh08G010900 vs. ExPASy TrEMBL
Match: A0A6J1EUG2 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111436742 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 3.8e-99
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MDSKPSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60
           MDSKPSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP
Sbjct: 1   MDSKPSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60

Query: 61  IRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120
           IRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK
Sbjct: 61  IRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120

Query: 121 IRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN 180
           IRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN
Sbjct: 121 IRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN 179

[Close]

BLAST of CmoCh08G010900 vs. ExPASy TrEMBL
Match: A0A6J1KIN8 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111494790 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.1e-93
Identity = 171/179 (95.53%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MDSKPSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60
           MDSK SDLNLGATELRLGLPGTAAESDGSADNSSGVRT KR LQNDSAPPPKSQVVGWPP
Sbjct: 1   MDSKLSDLNLGATELRLGLPGTAAESDGSADNSSGVRTYKRILQNDSAPPPKSQVVGWPP 60

Query: 61  IRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120
           IRSFRKNTLLPKKTE+TTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYP LLKGLEEMFK
Sbjct: 61  IRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPSLLKGLEEMFK 120

Query: 121 IRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN 180
            RIGAYCE EGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGS+VGGLRN
Sbjct: 121 FRIGAYCEREGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSDVGGLRN 179

[Close]

BLAST of CmoCh08G010900 vs. ExPASy TrEMBL
Match: A0A6J1HCQ7 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111462208 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.5e-82
Identity = 155/180 (86.11%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 1   MDSKPS---DLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVG 60
           MDSK S    LNL ATELRLGLPGT    DGSADNS GVRTNKRNLQN SAPPPKSQVVG
Sbjct: 1   MDSKLSFQNHLNLEATELRLGLPGT----DGSADNSCGVRTNKRNLQNHSAPPPKSQVVG 60

Query: 61  WPPIRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEE 120
           WPPIRSFRKNTLLPKKTE+TTAAEGGGIYVKVSMDGAPYLRK+D+G+YKGYPEL+KGLEE
Sbjct: 61  WPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKVDLGVYKGYPELVKGLEE 120

Query: 121 MFKIRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGL 178
           MFK R+G Y E EGY+GSDYAPTYEDKDGDWMLVGDVPW+MFISSCKR+RIMKGSEVGGL
Sbjct: 121 MFKFRMGTYREREGYQGSDYAPTYEDKDGDWMLVGDVPWQMFISSCKRLRIMKGSEVGGL 176

[Close]

BLAST of CmoCh08G010900 vs. ExPASy TrEMBL
Match: A0A6J1IED3 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111474863 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.1e-81
Identity = 153/180 (85.00%), Postives = 163/180 (90.56%), Query Frame = 0


Query: 1   MDSKPS---DLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVG 60
           MDS+ S    LNL AT+LRLGLPG     DGSADNS GVRTNKRNLQN SAPPPKSQVVG
Sbjct: 1   MDSQLSFQNHLNLEATQLRLGLPGI----DGSADNSCGVRTNKRNLQNHSAPPPKSQVVG 60

Query: 61  WPPIRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEE 120
           WPPIRSFRKNTLLPKKTE+TTAAEGGGIYVKVSMDGAPYLRK+D+G+YKGYPEL+KGLEE
Sbjct: 61  WPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKVDLGVYKGYPELVKGLEE 120

Query: 121 MFKIRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGL 178
           MFK R+G Y E EGY+GSDYAPTYEDKDGDWMLVGDVPW+MFISSCKRMRIMKGSEVGGL
Sbjct: 121 MFKFRMGTYSEREGYQGSDYAPTYEDKDGDWMLVGDVPWQMFISSCKRMRIMKGSEVGGL 176

[Close]

BLAST of CmoCh08G010900 vs. ExPASy TrEMBL
Match: A0A0A0LIA8 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G200440 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.8e-73
Identity = 139/174 (79.89%), Postives = 152/174 (87.36%), Query Frame = 0


Query: 6   SDLNLGATELRLGLPGTAAESDGSADNSSGVR-TNKRNLQNDSAPPPKSQVVGWPPIRSF 65
           +DLNL ATELRLGLPG  +E D S+  SS V+  NKRN QNDSAPPPK+QVVGWPPIRSF
Sbjct: 9   NDLNLEATELRLGLPGIVSERDDSSATSSAVKPNNKRNFQNDSAPPPKAQVVGWPPIRSF 68

Query: 66  RKNTLLPKKTE-STTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFKIRI 125
           RKNTL  KKTE +TTA +GGGIYVKVSMDGAPYLRKID+ +YKGYPELLK LE+MFK  I
Sbjct: 69  RKNTLQVKKTEATTTAVDGGGIYVKVSMDGAPYLRKIDLSVYKGYPELLKALEDMFKFTI 128

Query: 126 GAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGL 178
           G Y E EGY+GSD+APTYEDKDGDWMLVGDVPW+MFISSCKRMRIMKGSEVGGL
Sbjct: 129 GQYSEREGYKGSDFAPTYEDKDGDWMLVGDVPWQMFISSCKRMRIMKGSEVGGL 182

[Close]

BLAST of CmoCh08G010900 vs. NCBI nr
Match: XP_022930223.1 (auxin-induced protein 22B-like [Cucurbita moschata])

HSP 1 Score: 370.5 bits (950), Expect = 7.9e-99
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MDSKPSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60
           MDSKPSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP
Sbjct: 1   MDSKPSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60

Query: 61  IRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120
           IRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK
Sbjct: 61  IRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120

Query: 121 IRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN 180
           IRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN
Sbjct: 121 IRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN 179

[Close]

BLAST of CmoCh08G010900 vs. NCBI nr
Match: KAG6593866.1 (Auxin-induced protein 22B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026208.1 Auxin-induced protein 22B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 360.9 bits (925), Expect = 6.3e-96
Identity = 175/179 (97.77%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MDSKPSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60
           MDSK SDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP
Sbjct: 1   MDSKLSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60

Query: 61  IRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120
           IRSFRKNTLLPKKTE+TTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK
Sbjct: 61  IRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120

Query: 121 IRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN 180
            RIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPW MFISSCKRMRIMKGSEVGGLRN
Sbjct: 121 TRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVGGLRN 179

[Close]

BLAST of CmoCh08G010900 vs. NCBI nr
Match: XP_023515196.1 (auxin-induced protein 22B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.1 bits (923), Expect = 1.1e-95
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MDSKPSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60
           MDSK SDLNLGATELRLGLPGTAAES+GSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP
Sbjct: 1   MDSKLSDLNLGATELRLGLPGTAAESNGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60

Query: 61  IRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120
           IRSFRKNTLLPKKTE+TTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK
Sbjct: 61  IRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120

Query: 121 IRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN 180
            RIGAYCE EGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN
Sbjct: 121 FRIGAYCEREGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN 179

[Close]

BLAST of CmoCh08G010900 vs. NCBI nr
Match: XP_023000550.1 (auxin-responsive protein IAA4-like [Cucurbita maxima])

HSP 1 Score: 352.4 bits (903), Expect = 2.2e-93
Identity = 171/179 (95.53%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MDSKPSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60
           MDSK SDLNLGATELRLGLPGTAAESDGSADNSSGVRT KR LQNDSAPPPKSQVVGWPP
Sbjct: 1   MDSKLSDLNLGATELRLGLPGTAAESDGSADNSSGVRTYKRILQNDSAPPPKSQVVGWPP 60

Query: 61  IRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120
           IRSFRKNTLLPKKTE+TTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYP LLKGLEEMFK
Sbjct: 61  IRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPSLLKGLEEMFK 120

Query: 121 IRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN 180
            RIGAYCE EGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGS+VGGLRN
Sbjct: 121 FRIGAYCEREGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSDVGGLRN 179

[Close]

BLAST of CmoCh08G010900 vs. NCBI nr
Match: XP_022961610.1 (auxin-responsive protein IAA4-like [Cucurbita moschata])

HSP 1 Score: 314.7 bits (805), Expect = 5.2e-82
Identity = 155/180 (86.11%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 1   MDSKPS---DLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVG 60
           MDSK S    LNL ATELRLGLPGT    DGSADNS GVRTNKRNLQN SAPPPKSQVVG
Sbjct: 1   MDSKLSFQNHLNLEATELRLGLPGT----DGSADNSCGVRTNKRNLQNHSAPPPKSQVVG 60

Query: 61  WPPIRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEE 120
           WPPIRSFRKNTLLPKKTE+TTAAEGGGIYVKVSMDGAPYLRK+D+G+YKGYPEL+KGLEE
Sbjct: 61  WPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKVDLGVYKGYPELVKGLEE 120

Query: 121 MFKIRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGL 178
           MFK R+G Y E EGY+GSDYAPTYEDKDGDWMLVGDVPW+MFISSCKR+RIMKGSEVGGL
Sbjct: 121 MFKFRMGTYREREGYQGSDYAPTYEDKDGDWMLVGDVPWQMFISSCKRLRIMKGSEVGGL 176

[Close]

BLAST of CmoCh08G010900 vs. TAIR 10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 221.9 bits (564), Expect = 4.2e-58
Identity = 109/175 (62.29%), Postives = 133/175 (76.00%), Query Frame = 0


Query: 8   LNLGATELRLGLPGT-AAESDGSADNSSGVRTNKRNLQN----DSAPPPKSQVVGWPPIR 67
           +NL ATELRLGLPGT    S G ++        ++ +++    ++A PPK+Q+VGWPP+R
Sbjct: 11  VNLKATELRLGLPGTEETVSCGKSNKRVLPEATEKEIESTGKTETASPPKAQIVGWPPVR 70

Query: 68  SFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFKIR 127
           S+RKN +  KK+ES    EG G YVKVSMDGAPYLRKID+ +YK YPEL+K LE MFK  
Sbjct: 71  SYRKNNVQTKKSES----EGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFKFS 130

Query: 128 IGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGL 178
           +G Y E EGY+GSD+ PTYEDKDGDWMLVGDVPW MF+SSCKR+RIMKGSEV GL
Sbjct: 131 VGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGL 181

[Close]

BLAST of CmoCh08G010900 vs. TAIR 10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 216.5 bits (550), Expect = 1.8e-56
Identity = 109/183 (59.56%), Postives = 126/183 (68.85%), Query Frame = 0


Query: 8   LNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQND-------------SAPPPKSQ 67
           +NL  TELRLGLPGT    +     S     NKR L  D             ++PP K+Q
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQ 64

Query: 68  VVGWPPIRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKG 127
           +VGWPP+RS+RKN +  KK ES    EG GIYVKVSMDGAPYLRKID+  YKGY ELLK 
Sbjct: 65  IVGWPPVRSYRKNNIQSKKNES--EHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKA 124

Query: 128 LEEMFKIRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEV 178
           LE MFK  +G Y E +GY+GSD+ PTYEDKDGDWML+GDVPW MFI +CKR+RIMKGSE 
Sbjct: 125 LEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEA 184

[Close]

BLAST of CmoCh08G010900 vs. TAIR 10
Match: AT3G23030.1 (indole-3-acetic acid inducible 2 )

HSP 1 Score: 198.4 bits (503), Expect = 5.0e-51
Identity = 103/180 (57.22%), Postives = 119/180 (66.11%), Query Frame = 0


Query: 4   KPSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNL------QNDSAPPPKSQVVG 63
           K ++LNL  TEL LGLPG   E        S V++N + L      + +S PP K+Q+VG
Sbjct: 5   KVNELNLKDTELCLGLPG-RTEKIKEEQEVSCVKSNNKRLFEETRDEEESTPPTKTQIVG 64

Query: 64  WPPIRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEE 123
           WPP+RS RKN                  YVKVSMDGAPYLRKID+  YK YPELLK LE 
Sbjct: 65  WPPVRSSRKN-------------NNSVSYVKVSMDGAPYLRKIDLKTYKNYPELLKALEN 124

Query: 124 MFKIRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGL 178
           MFK+ IG YCE EGY+GS + PTYEDKDGDWMLVGDVPW MF SSCKR+RIMKGS+   L
Sbjct: 125 MFKVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSDAPAL 170

[Close]

BLAST of CmoCh08G010900 vs. TAIR 10
Match: AT4G14560.1 (indole-3-acetic acid inducible )

HSP 1 Score: 195.3 bits (495), Expect = 4.2e-50
Identity = 100/168 (59.52%), Postives = 116/168 (69.05%), Query Frame = 0


Query: 8   LNLGATELRLGLPGTAAES--DGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPPIRSFR 67
           LNL  TELRLGLPG   E   + S   S+  R N  + +  + PP K+Q+VGWPP+RS R
Sbjct: 7   LNLKDTELRLGLPGAQEEQQLELSCVRSNNKRKNNDSTEESAPPPAKTQIVGWPPVRSNR 66

Query: 68  KNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFKIRIGA 127
           KN     K  S         YVKVSMDGAPYLRKID+ +YK YPELLK LE MFK  +G 
Sbjct: 67  KNN--NNKNVS---------YVKVSMDGAPYLRKIDLKMYKNYPELLKALENMFKFTVGE 126

Query: 128 YCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSE 174
           Y E EGY+GS + PTYEDKDGDWMLVGDVPW MF SSC+++RIMKGSE
Sbjct: 127 YSEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSE 163

[Close]

BLAST of CmoCh08G010900 vs. TAIR 10
Match: AT3G04730.1 (indoleacetic acid-induced protein 16 )

HSP 1 Score: 164.5 bits (415), Expect = 8.0e-41
Identity = 102/223 (45.74%), Postives = 120/223 (53.81%), Query Frame = 0


Query: 8   LNLGATELRLGLPG------TAAESDGSADNSSGV------------RTNKRNLQNDS-- 67
           +N  ATELRLGLPG       A +++G    S  V              +K +L+N    
Sbjct: 2   INFEATELRLGLPGGNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLENMKEK 61

Query: 68  --APPPKSQVVGWPPIRSFRKNTLLPKKTESTTAAEGGG------------------IYV 127
              PP K+QVVGWPP+RSFRKN +  +K  +  A EG                     YV
Sbjct: 62  VVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYV 121

Query: 128 KVSMDGAPYLRKIDVGLYKGYPELLKGLEEMF-KIRIGAYCES------------EGYRG 178
           KVSMDGAPYLRKID+ LYK Y +L   L +MF    IG Y               +   G
Sbjct: 122 KVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLNG 181

The following BLAST results are available for this feature:

BLAST of CmoCh08G010900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32294	1.1e-58	59.38	Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 S...	[more]
P33077	6.0e-57	62.29	Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2	[more]
O24542	1.1e-55	59.79	Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 S...	[more]
Q38822	2.5e-55	59.56	Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1	[more]
O24543	2.8e-54	56.16	Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 S...	[more]

BLAST of CmoCh08G010900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EUG2	3.8e-99	100.00	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111436742 PE=3 SV=1	[more]
A0A6J1KIN8	1.1e-93	95.53	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111494790 PE=3 SV=1	[more]
A0A6J1HCQ7	2.5e-82	86.11	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111462208 PE=3 SV=1	[more]
A0A6J1IED3	2.1e-81	85.00	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111474863 PE=3 SV=1	[more]
A0A0A0LIA8	2.8e-73	79.89	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G200440 PE=3 SV=1	[more]

BLAST of CmoCh08G010900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930223.1	7.9e-99	100.00	auxin-induced protein 22B-like [Cucurbita moschata]	[more]
KAG6593866.1	6.3e-96	97.77	Auxin-induced protein 22B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]
XP_023515196.1	1.1e-95	97.21	auxin-induced protein 22B-like [Cucurbita pepo subsp. pepo]	[more]
XP_023000550.1	2.2e-93	95.53	auxin-responsive protein IAA4-like [Cucurbita maxima]	[more]
XP_022961610.1	5.2e-82	86.11	auxin-responsive protein IAA4-like [Cucurbita moschata]	[more]

BLAST of CmoCh08G010900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43700.1	4.2e-58	62.29	AUX/IAA transcriptional regulator family protein	[more]
AT1G04240.1	1.8e-56	59.56	AUX/IAA transcriptional regulator family protein	[more]
AT3G23030.1	5.0e-51	57.22	indole-3-acetic acid inducible 2	[more]
AT4G14560.1	4.2e-50	59.52	indole-3-acetic acid inducible	[more]
AT3G04730.1	8.0e-41	45.74	indoleacetic acid-induced protein 16	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 79..179 e-value: 8.2E-41 score: 140.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..51
None	No IPR available	PANTHER	PTHR31734:SF167	AUXIN-RESPONSIVE PROTEIN	coord: 6..178
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 77..170
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 37..177 e-value: 6.4E-55 score: 186.6
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 6..178
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 84..171 score: 25.655828

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G010900.1	CmoCh08G010900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding