CmoCh08G007050 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G007050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DUF4005 domain-containing protein
Location	Cmo_Chr08: 4462352 .. 4463470 (+)
RNA-Seq Expression	CmoCh08G007050
Synteny	CmoCh08G007050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGCCTTTTGTAGAGCTCAAACGGTCATTAGGACTCAAAGGGCTCATCGATCTTTCAATAAATATAATAGGTTTATCCTTGAGATTTGACCTCGAAAGTATGCAGTAAGATTCGATATCAAAATGACCCTATTTGATAACCATTTGATTTATTTAGTTTTCGTCTAATGATTAACAAACAGATGAGTGAAACTCTAACTTTGTTCCTATTTCTTTGGGATTTTCAAGAACGTTTTGATGAAACAAGAAGTGAATTTCATAATAAGAAATTATTTATATCATAATCTTATGAAATCTGCATCAACTCTCAAAAATCATCAAAATCGACACCTATCAAACTCGATCAAAGTCTCGTAGGTACATCTCTGCATTATCCGATTATGGAGAAGACAAAGCAGCACCTCTCCAACCAATCTCTTCGTTGTTGCCATGTCTAAATCGACCTCACCCGTTTACACTTGATTGTCACAATGTACATCAAGACTTCAAATGGTACTTGATGGACGAAGATTACAAGTTCCCTACCACTCACAGCATGTCCCAACTATCAAATTCATTCGCCTCCACCAACATGCCGGTGACCCCATCAAAGAGGGTCACGACAAGAGCTTCTTTAGGCCTACATGACTTGCCCAAATTATACGGCAAACACACCATCGTTCAAGACAAAATCTTTTGAGTTAGATTGATAAATCTTTTAGACTAGCCCTAAATTTCAAGTTGGTTAAGTGGGTGATTCGAGCAACCCAAATAGAGTTTGCAACCTAACCCTCTATTTCTTGATTCCGATGAATTGGATTATTCTTTTAATTATTTAAAAAATCAAACTTATTTATAATACACGAAACATCAATAACTAAAATTTTATAAAACTCAACAAAAACCAAACATTTACACATCACAACCCATCACTGTTTGTCAAATATTCTTAATTTTCAAAATAATCAGTTAATAATGTTGATTAACATAGTATATCCATGATTAATTGACAAACATTCTTTAGATACATATATATACATACATATATATACATATAGACTTAAAAAAAAAGAAATAAATAATTGATATTCCAAAAATATAATTATAAATATTAATTACAGTGTAAAATAGGAATAA

mRNA sequence

ATGCAAGCCTTTTGTAGAGCTCAAACGGTCATTAGGACTCAAAGGGCTCATCGATCTTTCAATAAATATAATAGGTACATCTCTGCATTATCCGATTATGGAGAAGACAAAGCAGCACCTCTCCAACCAATCTCTTCGTTGTTGCCATGTCTAAATCGACCTCACCCGTTTACACTTGATTGTCACAATGTACATCAAGACTTCAAATGGTACTTGATGGACGAAGATTACAAGTTCCCTACCACTCACAGCATGTCCCAACTATCAAATTCATTCGCCTCCACCAACATGCCGGTGACCCCATCAAAGAGGGAATAA

Coding sequence (CDS)

ATGCAAGCCTTTTGTAGAGCTCAAACGGTCATTAGGACTCAAAGGGCTCATCGATCTTTCAATAAATATAATAGGTACATCTCTGCATTATCCGATTATGGAGAAGACAAAGCAGCACCTCTCCAACCAATCTCTTCGTTGTTGCCATGTCTAAATCGACCTCACCCGTTTACACTTGATTGTCACAATGTACATCAAGACTTCAAATGGTACTTGATGGACGAAGATTACAAGTTCCCTACCACTCACAGCATGTCCCAACTATCAAATTCATTCGCCTCCACCAACATGCCGGTGACCCCATCAAAGAGGGAATAA

Protein sequence

MQAFCRAQTVIRTQRAHRSFNKYNRYISALSDYGEDKAAPLQPISSLLPCLNRPHPFTLDCHNVHQDFKWYLMDEDYKFPTTHSMSQLSNSFASTNMPVTPSKRE

Homology

[Close]

BLAST of CmoCh08G007050 vs. ExPASy TrEMBL
Match: A0A6J1KFN9 (protein IQ-DOMAIN 14-like OS=Cucurbita maxima OX=3661 GN=LOC111494617 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.6e-26
Identity = 76/162 (46.91%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 1   MQAFCRAQTVIRTQRAHRSFNKYN------------------------------------ 60
           MQA  RAQT +RTQRA RSFNK N                                    
Sbjct: 170 MQALFRAQTALRTQRARRSFNKENRFIPEIRPRKSADRFDETRSEFHSKRLSIASSYETS 229

Query: 61  -----------------------RYISALSDYGEDKAAPLQPISSLLPCLNRPHPFTLDC 104
                                  RYIS LS+YG D+AAPLQ I+S LP  NRP  FTLDC
Sbjct: 230 INSLDESPKIVEIDTYRTRSKSRRYISTLSEYGGDEAAPLQAITSPLPYSNRPRTFTLDC 289

[Close]

BLAST of CmoCh08G007050 vs. ExPASy TrEMBL
Match: A0A6J1HHA1 (protein IQ-DOMAIN 14-like OS=Cucurbita moschata OX=3662 GN=LOC111464315 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.6e-26
Identity = 76/162 (46.91%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 1   MQAFCRAQTVIRTQRAHRSFNKYN------------------------------------ 60
           MQA  RAQT +RTQRA RSFNK N                                    
Sbjct: 170 MQALFRAQTALRTQRARRSFNKENRFIPEIRPRKSAERLDETRSEFHSKRLSIASSYETS 229

Query: 61  -----------------------RYISALSDYGEDKAAPLQPISSLLPCLNRPHPFTLDC 104
                                  RYIS LS+YG D+AAPLQ I+S LP  NRP  FTLDC
Sbjct: 230 INSLDESPKIVEIDTYRTRSKSRRYISTLSEYGGDEAAPLQAITSPLPYSNRPRTFTLDC 289

[Close]

BLAST of CmoCh08G007050 vs. ExPASy TrEMBL
Match: A0A6J1GMR2 (protein IQ-DOMAIN 14-like OS=Cucurbita moschata OX=3662 GN=LOC111455807 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.1e-16
Identity = 70/161 (43.48%), Postives = 75/161 (46.58%), Query Frame = 0


Query: 1   MQAFCRAQTVIRTQRAHRSFNKYN------------------------------------ 60
           MQ   RAQT IRTQRA RSFNK N                                    
Sbjct: 167 MQVLFRAQTAIRTQRARRSFNKENRFIPEIRPRKSAERFDETRSEFHSKRLSETPSMNSM 226

Query: 61  --------------------RYISALSDYGEDKAAPLQPISSLLPCLNRPHPFTLDCH-N 104
                               RYISA S+ G D  A     SS LPCLNRP    +DCH N
Sbjct: 227 DESPKIVEIDTYRTRSSRSRRYISAFSECGGDDVA---ISSSPLPCLNRPR--IIDCHNN 286

[Close]

BLAST of CmoCh08G007050 vs. ExPASy TrEMBL
Match: A0A6J1CVX7 (protein IQ-DOMAIN 14 OS=Momordica charantia OX=3673 GN=LOC111015062 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 67/165 (40.61%), Postives = 76/165 (46.06%), Query Frame = 0


Query: 1   MQAFCRAQTVIRTQRAHRSFNKYNRYI--------------------------------- 60
           MQA  RAQT +RTQRA RSFNK NR+I                                 
Sbjct: 170 MQALFRAQTAVRTQRARRSFNKENRFIPEIRPRKSAERFDESRSEFHSKRLSVASSYETC 229

Query: 61  ---------------------------SALSDYGEDKAAPLQPISSLLPCLNRPHPFTLD 104
                                      +ALS+ G D   PLQ ISS  PC NRP     D
Sbjct: 230 INSLDESPKIVEIDTYRTRSRSRRFISAALSECGGDD-VPLQTISSPSPCPNRPR--VPD 289

[Close]

BLAST of CmoCh08G007050 vs. ExPASy TrEMBL
Match: A0A6J1JYQ7 (protein IQ-DOMAIN 14-like OS=Cucurbita maxima OX=3661 GN=LOC111488641 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.9e-13
Identity = 68/161 (42.24%), Postives = 73/161 (45.34%), Query Frame = 0


Query: 1   MQAFCRAQTVIRTQRAHRSFNKYN------------------------------------ 60
           MQ   RAQT IRTQRA RSFNK N                                    
Sbjct: 167 MQVLFRAQTAIRTQRARRSFNKENRFIPEIRPRKSAERFDETRSEFHSKRLSETPSMNSM 226

Query: 61  --------------------RYISALSDYGEDKAAPLQPISSLLPCLNRPHPFTLDCH-N 104
                               RYISA S+ G D  A     SS LPCLNR  P  +D H N
Sbjct: 227 DESPKIVEIDTYRTRSSRSRRYISAFSECGGDDVA---ISSSPLPCLNR--PCIIDYHNN 286

[Close]

BLAST of CmoCh08G007050 vs. NCBI nr
Match: KAG7025841.1 (Protein IQ-DOMAIN 31, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.9 bits (315), Expect = 2.0e-25
Identity = 76/162 (46.91%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 1   MQAFCRAQTVIRTQRAHRSFNKYN------------------------------------ 60
           MQA  RAQT +RTQRA RSFNK N                                    
Sbjct: 170 MQALFRAQTALRTQRARRSFNKENRFIPEIRPRKSAERFDETRSEFHSKRLSIASSYETS 229

Query: 61  -----------------------RYISALSDYGEDKAAPLQPISSLLPCLNRPHPFTLDC 104
                                  RYIS LS+YG D+AAPLQ I+S LP  NRP  FTLDC
Sbjct: 230 INSLDESPKIVEIDTYRTRSKSRRYISTLSEYGGDEAAPLQAITSPLPYSNRPRTFTLDC 289

[Close]

BLAST of CmoCh08G007050 vs. NCBI nr
Match: XP_023514899.1 (protein IQ-DOMAIN 14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.9 bits (315), Expect = 2.0e-25
Identity = 76/162 (46.91%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 1   MQAFCRAQTVIRTQRAHRSFNKYN------------------------------------ 60
           MQA  RAQT +RTQRA RSFNK N                                    
Sbjct: 170 MQALFRAQTALRTQRARRSFNKENRFIPEIRPRKSAERFDEIRSEFHSKRLSIASSYETS 229

Query: 61  -----------------------RYISALSDYGEDKAAPLQPISSLLPCLNRPHPFTLDC 104
                                  RYIS LS+YG D+AAPLQ I+S LP  NRP  FTLDC
Sbjct: 230 INSLDESPKIVEIDTYRTRSKSRRYISTLSEYGGDEAAPLQAITSPLPYSNRPRTFTLDC 289

[Close]

BLAST of CmoCh08G007050 vs. NCBI nr
Match: XP_023000360.1 (protein IQ-DOMAIN 14-like [Cucurbita maxima] >XP_023000361.1 protein IQ-DOMAIN 14-like [Cucurbita maxima])

HSP 1 Score: 125.9 bits (315), Expect = 2.0e-25
Identity = 76/162 (46.91%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 1   MQAFCRAQTVIRTQRAHRSFNKYN------------------------------------ 60
           MQA  RAQT +RTQRA RSFNK N                                    
Sbjct: 170 MQALFRAQTALRTQRARRSFNKENRFIPEIRPRKSADRFDETRSEFHSKRLSIASSYETS 229

Query: 61  -----------------------RYISALSDYGEDKAAPLQPISSLLPCLNRPHPFTLDC 104
                                  RYIS LS+YG D+AAPLQ I+S LP  NRP  FTLDC
Sbjct: 230 INSLDESPKIVEIDTYRTRSKSRRYISTLSEYGGDEAAPLQAITSPLPYSNRPRTFTLDC 289

[Close]

BLAST of CmoCh08G007050 vs. NCBI nr
Match: XP_022964232.1 (protein IQ-DOMAIN 14-like [Cucurbita moschata])

HSP 1 Score: 125.9 bits (315), Expect = 2.0e-25
Identity = 76/162 (46.91%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 1   MQAFCRAQTVIRTQRAHRSFNKYN------------------------------------ 60
           MQA  RAQT +RTQRA RSFNK N                                    
Sbjct: 170 MQALFRAQTALRTQRARRSFNKENRFIPEIRPRKSAERLDETRSEFHSKRLSIASSYETS 229

Query: 61  -----------------------RYISALSDYGEDKAAPLQPISSLLPCLNRPHPFTLDC 104
                                  RYIS LS+YG D+AAPLQ I+S LP  NRP  FTLDC
Sbjct: 230 INSLDESPKIVEIDTYRTRSKSRRYISTLSEYGGDEAAPLQAITSPLPYSNRPRTFTLDC 289

[Close]

BLAST of CmoCh08G007050 vs. NCBI nr
Match: KAG6593494.1 (hypothetical protein SDJN03_12970, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 9.9e-25
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 17  HRSFNKYNRYISALSDYGEDKAAPLQPISSLLPCLNRPHPFTLDCHNVHQDFKWYLMDED 76
           +R+ +K  RYIS LS+YG D+AAPLQ I+S LP  NRP  FTLDCHNVH+DF+W LM ED
Sbjct: 191 YRTRSKSRRYISTLSEYGGDEAAPLQAITSPLPYSNRPRTFTLDCHNVHRDFEWCLMGED 250

Query: 77  YKFPTTHSMSQLSNSFASTNMPVTPSK 104
            KFPT HS  +LSNSFASTNM VTPSK
Sbjct: 251 CKFPTAHSTPRLSNSFASTNMSVTPSK 277

The following BLAST results are available for this feature:

BLAST of CmoCh08G007050 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G007050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KFN9	9.6e-26	46.91	protein IQ-DOMAIN 14-like OS=Cucurbita maxima OX=3661 GN=LOC111494617 PE=4 SV=1	[more]
A0A6J1HHA1	9.6e-26	46.91	protein IQ-DOMAIN 14-like OS=Cucurbita moschata OX=3662 GN=LOC111464315 PE=4 SV=...	[more]
A0A6J1GMR2	4.1e-16	43.48	protein IQ-DOMAIN 14-like OS=Cucurbita moschata OX=3662 GN=LOC111455807 PE=4 SV=...	[more]
A0A6J1CVX7	1.0e-14	40.61	protein IQ-DOMAIN 14 OS=Momordica charantia OX=3673 GN=LOC111015062 PE=4 SV=1	[more]
A0A6J1JYQ7	1.9e-13	42.24	protein IQ-DOMAIN 14-like OS=Cucurbita maxima OX=3661 GN=LOC111488641 PE=4 SV=1	[more]

BLAST of CmoCh08G007050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025841.1	2.0e-25	46.91	Protein IQ-DOMAIN 31, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023514899.1	2.0e-25	46.91	protein IQ-DOMAIN 14-like [Cucurbita pepo subsp. pepo]	[more]
XP_023000360.1	2.0e-25	46.91	protein IQ-DOMAIN 14-like [Cucurbita maxima] >XP_023000361.1 protein IQ-DOMAIN 1...	[more]
XP_022964232.1	2.0e-25	46.91	protein IQ-DOMAIN 14-like [Cucurbita moschata]	[more]
KAG6593494.1	9.9e-25	68.97	hypothetical protein SDJN03_12970, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh08G007050 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G007050.1	CmoCh08G007050.1	mRNA