CmoCh08G007040 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G007040
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	UPF0664 stress-induced protein C29B12.11c
Location	Cmo_Chr08: 4460250 .. 4461014 (+)
RNA-Seq Expression	CmoCh08G007040
Synteny	CmoCh08G007040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCGAACAAGAAGAAATCAACNTTGTTTAGTGTGTCCCGAGTCCCACTTCAGGCAGCTTAATCAATAGCTTATCTCACAGGTGGTGCCTGATGACCAGCACAGAGCTCTCTATTCGACACACTCGTTTAAGATTTTGTTCAAGGAAGGGGGATGTGGTACCTTTGTACCACTCTTCTTCAACCTGCTGTCTTCAGTGAGGCAATACAATCAATACACGAATGCAGGTCCTCGAGTCGATCCATTGCAGGCAGCACAAACTCCTGTCGATGAAATGATGAGACATGCGTAAGTTATCATTCGTCAAATTCGATCTCACGGTCAAGTTAAAATTTTTCATTTGATTATGTTTTTGGTGTTTAACTTGCAGATATGTGGACCCACATGATCCGACCAAAATCTTCTTACAACAGCCATCGACAGAGTCCCAGTTAAGGCGGCGCACCTACCAGTCCCAACCAGCTGAAAATGCAATGTGAAGTTAGTTGAACGACCTCATGCAAATAGTTTTATTGGTTGGTTGGTTGGTACTTTGTTTAAGTGAGGGAGTTGATGATGGAACGAGTGAATACTTGTACAGTTGAAGGATGGACCGTTGAATTTAAAGTTACGGTTAGACCCAATTGTTATCTACTTAAGCTTCTACTTAACTCTTCCTGTCTGTTATATTGCCTGGGGCCGGATGAAAGGATTTACGTAAAGAATTTGTTCAACTTAAATATAATAATAGAAGTGTATCCTGTTCTTATGATTGTATGGCC

mRNA sequence

ATGGAGATCGAACAAGAAGAAATCAACNTTGTGGTGCCTGATGACCAGCACAGAGCTCTCTATTCGACACACTCGTTTAAGATTTTGTTCAAGGAAGGGGGATGTGGTACCTTTGTACCACTCTTCTTCAACCTGCTGTCTTCAGTGAGGCAATACAATCAATACACGAATGCAGGTCCTCGAGTCGATCCATTGCAGGCAGCACAAACTCCTGTCGATGAAATGATGAGACATGCATATGTGGACCCACATGATCCGACCAAAATCTTCTTACAACAGCCATCGACAGAGTCCCAGTTAAGGCGGCGCACCTACCAGTCCCAACCAGCTGAAAATGCAATGTGAAGTTAGTTGAACGACCTCATGCAAATAGTTTTATTGGTTGGTTGGTTGGTACTTTGTTTAAGTGAGGGAGTTGATGATGGAACGAGTGAATACTTGTACAGTTGAAGGATGGACCGTTGAATTTAAAGTTACGGTTAGACCCAATTGTTATCTACTTAAGCTTCTACTTAACTCTTCCTGTCTGTTATATTGCCTGGGGCCGGATGAAAGGATTTACGTAAAGAATTTGTTCAACTTAAATATAATAATAGAAGTGTATCCTGTTCTTATGATTGTATGGCC

Coding sequence (CDS)

ATGGAGATCGAACAAGAAGAAATCAACNTTGTGGTGCCTGATGACCAGCACAGAGCTCTCTATTCGACACACTCGTTTAAGATTTTGTTCAAGGAAGGGGGATGTGGTACCTTTGTACCACTCTTCTTCAACCTGCTGTCTTCAGTGAGGCAATACAATCAATACACGAATGCAGGTCCTCGAGTCGATCCATTGCAGGCAGCACAAACTCCTGTCGATGAAATGATGAGACATGCATATGTGGACCCACATGATCCGACCAAAATCTTCTTACAACAGCCATCGACAGAGTCCCAGTTAAGGCGGCGCACCTACCAGTCCCAACCAGCTGAAAATGCAATGTGA

Protein sequence

MEIEQEEINXVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM

Homology

[Close]

BLAST of CmoCh08G007040 vs. ExPASy TrEMBL
Match: A0A6J1EXS2 (uncharacterized protein LOC111439171 OS=Cucurbita moschata OX=3662 GN=LOC111439171 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 8   INXVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA 67
           +  VVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA
Sbjct: 96  VEPVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA 155

Query: 68  AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 115
           AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM
Sbjct: 156 AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh08G007040 vs. ExPASy TrEMBL
Match: A0A6J1I7J8 (uncharacterized protein LOC111470726 OS=Cucurbita maxima OX=3661 GN=LOC111470726 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.7e-53
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 8   INXVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA 67
           +  VVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA
Sbjct: 96  VEPVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA 155

Query: 68  AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 115
           AQTPVDEMMR+AYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM
Sbjct: 156 AQTPVDEMMRYAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh08G007040 vs. ExPASy TrEMBL
Match: A0A5A7T2S6 (UPF0664 stress-induced protein C29B12.11c OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1593G00010 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 99/107 (92.52%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 8   INXVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA 67
           +  VVP+DQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQA
Sbjct: 96  VEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQA 155

Query: 68  AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 115
           AQTPVDEMMRHAYVDP+DPTKIFLQQP+TESQLRRRTYQSQPAENAM
Sbjct: 156 AQTPVDEMMRHAYVDPNDPTKIFLQQPTTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh08G007040 vs. ExPASy TrEMBL
Match: A0A0A0LI97 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G845430 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 99/107 (92.52%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 8   INXVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA 67
           +  VVP+DQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQA
Sbjct: 96  VEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQA 155

Query: 68  AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 115
           AQTPVDEMMRHAYVDP+DPTKIFLQQP+TESQLRRRTYQSQPAENAM
Sbjct: 156 AQTPVDEMMRHAYVDPNDPTKIFLQQPATESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh08G007040 vs. ExPASy TrEMBL
Match: A0A1S3CPS8 (uncharacterized protein LOC103502837 OS=Cucumis melo OX=3656 GN=LOC103502837 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 99/107 (92.52%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 8   INXVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA 67
           +  VVP+DQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQA
Sbjct: 96  VEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQA 155

Query: 68  AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 115
           AQTPVDEMMRHAYVDP+DPTKIFLQQP+TESQLRRRTYQSQPAENAM
Sbjct: 156 AQTPVDEMMRHAYVDPNDPTKIFLQQPTTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh08G007040 vs. NCBI nr
Match: XP_022932704.1 (uncharacterized protein LOC111439171 [Cucurbita moschata] >XP_023539771.1 uncharacterized protein LOC111800356 [Cucurbita pepo subsp. pepo] >KAG6597720.1 hypothetical protein SDJN03_10900, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029167.1 SPAC29B12.11c [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.4 bits (555), Expect = 3.2e-53
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 8   INXVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA 67
           +  VVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA
Sbjct: 96  VEPVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA 155

Query: 68  AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 115
           AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM
Sbjct: 156 AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh08G007040 vs. NCBI nr
Match: XP_022972085.1 (uncharacterized protein LOC111470726 [Cucurbita maxima])

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-52
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 8   INXVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA 67
           +  VVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA
Sbjct: 96  VEPVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA 155

Query: 68  AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 115
           AQTPVDEMMR+AYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM
Sbjct: 156 AQTPVDEMMRYAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh08G007040 vs. NCBI nr
Match: XP_004141150.1 (uncharacterized protein LOC101208147 [Cucumis sativus] >KGN59776.1 hypothetical protein Csa_002671 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-50
Identity = 99/107 (92.52%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 8   INXVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA 67
           +  VVP+DQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQA
Sbjct: 96  VEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQA 155

Query: 68  AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 115
           AQTPVDEMMRHAYVDP+DPTKIFLQQP+TESQLRRRTYQSQPAENAM
Sbjct: 156 AQTPVDEMMRHAYVDPNDPTKIFLQQPATESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh08G007040 vs. NCBI nr
Match: XP_008465172.1 (PREDICTED: uncharacterized protein LOC103502837 [Cucumis melo] >KAA0037680.1 UPF0664 stress-induced protein C29B12.11c [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-50
Identity = 99/107 (92.52%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 8   INXVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA 67
           +  VVP+DQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQA
Sbjct: 96  VEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQA 155

Query: 68  AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 115
           AQTPVDEMMRHAYVDP+DPTKIFLQQP+TESQLRRRTYQSQPAENAM
Sbjct: 156 AQTPVDEMMRHAYVDPNDPTKIFLQQPTTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh08G007040 vs. NCBI nr
Match: XP_038903065.1 (uncharacterized protein LOC120089752 [Benincasa hispida])

HSP 1 Score: 206.1 bits (523), Expect = 1.6e-49
Identity = 97/107 (90.65%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 8   INXVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQA 67
           +  VVP+DQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQA
Sbjct: 96  VEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQA 155

Query: 68  AQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM 115
           AQTPVDEMMRHAYVDP+DPT+IFLQQP+TESQLRRRTYQSQP ENAM
Sbjct: 156 AQTPVDEMMRHAYVDPNDPTRIFLQQPTTESQLRRRTYQSQPVENAM 202

[Close]

BLAST of CmoCh08G007040 vs. TAIR 10
Match: AT5G11680.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WW-domain-binding protein (InterPro:IPR018826); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 167.9 bits (424), Expect = 4.6e-42
Identity = 82/113 (72.57%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 7   EINXVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTN-------AG 66
           ++  VVP+++HRALYSTHSFKILFKEGGCGTFVPLF NL+SSVRQYN+          A 
Sbjct: 95  QVEPVVPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQYNRQMQQAAEAAAAA 154

Query: 67  PRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAEN 113
           P VDPLQAAQTPVDEMMRHAYVDP+DPT+I+LQQPS ESQLRRR Y S  AE+
Sbjct: 155 PHVDPLQAAQTPVDEMMRHAYVDPNDPTRIYLQQPSGESQLRRRAYHSGAAEH 207

The following BLAST results are available for this feature:

BLAST of CmoCh08G007040 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G007040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EXS2	1.6e-53	97.20	uncharacterized protein LOC111439171 OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]
A0A6J1I7J8	7.7e-53	96.26	uncharacterized protein LOC111470726 OS=Cucurbita maxima OX=3661 GN=LOC111470726...	[more]
A0A5A7T2S6	1.2e-50	92.52	UPF0664 stress-induced protein C29B12.11c OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0LI97	1.2e-50	92.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G845430 PE=4 SV=1	[more]
A0A1S3CPS8	1.2e-50	92.52	uncharacterized protein LOC103502837 OS=Cucumis melo OX=3656 GN=LOC103502837 PE=...	[more]

BLAST of CmoCh08G007040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932704.1	3.2e-53	97.20	uncharacterized protein LOC111439171 [Cucurbita moschata] >XP_023539771.1 unchar...	[more]
XP_022972085.1	1.6e-52	96.26	uncharacterized protein LOC111470726 [Cucurbita maxima]	[more]
XP_004141150.1	2.5e-50	92.52	uncharacterized protein LOC101208147 [Cucumis sativus] >KGN59776.1 hypothetical ...	[more]
XP_008465172.1	2.5e-50	92.52	PREDICTED: uncharacterized protein LOC103502837 [Cucumis melo] >KAA0037680.1 UPF...	[more]
XP_038903065.1	1.6e-49	90.65	uncharacterized protein LOC120089752 [Benincasa hispida]	[more]

BLAST of CmoCh08G007040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11680.1	4.6e-42	72.57	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..113
None	No IPR available	PANTHER	PTHR31606:SF11	WW DOMAIN-BINDING PROTEIN 2-LIKE	coord: 9..109
IPR044852	WW domain-binding protein 2-like	PANTHER	PTHR31606	WW DOMAIN BINDING PROTEIN 2, ISOFORM E	coord: 9..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G007040.1	CmoCh08G007040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0003713	transcription coactivator activity