CmoCh08G006830 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G006830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	activating signal cointegrator 1 complex subunit 1
Location	Cmo_Chr08: 4367874 .. 4370573 (-)
RNA-Seq Expression	CmoCh08G006830
Synteny	CmoCh08G006830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGGATGGTAGTTTGCAGGTCTCTTTTCAGGTATGATTCATAAAAATGAAAAACTCTGTTTGGATTCAGAGAAAATCTCCTTAAGCAATGCTCTACAAATCTTGTAATTCTACAAATTTCTGAGCTTATTGCTTTCGTAACAATGCTCGATGTTTGGCTCCATTTTCATCTTTTGAAACGGGATATAACCTAACATTAGTGGATGTTTTGATCAATCAAATAGTTCTAATTCAATCGATTAAGACTGAGAGGAAGTTTTGATCGATGTTACTTGAAAAATTATCAGTTAATCAGAGATATCTAAGCTCAATCCATGGATTGAAAGTTTCGCTCTCTTTATAAGATTCTCTGTTTGGCTGTATTTAATCTGCTGTGCTGCTTTTGTAGAGTCGACCGTCTCTTGAAATGTACAAGTCCGTATATGTCATATAGCAGCTCGTAATCTAGCTCTGAAGCTCATTATATTAACGATTAATTTGAAGTTGGAATGATTTTCTATTAAAAATATGAACGAATTATTGAATATGCCATAACTTATCTACTTTGAGTTCAGTTGTTTAGTCGTGATTTAACAATAGATTATCTTCAAGTTAGAGGAAGGGCAGGTCAAGGATATGATTAGATATGCCTTACTTATCAGCTTAAGCTTTAGAGTTGAATAGTAATTTAACACGATCTGAGCCTGAATTTGGATGTTGAAATGATGTTCTTAGTAATAAACTGGTGGTGGACTAGCTTCTAATCCTTATAAAACTGAGTTCTATTCCAATGCGTCAGGGACTCTATGCTGATGATGGTTGGAGCCTGAATGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGGTATGTGGAATTTATATTACAAAAGCATATAACTGTAGCTGTGCAGTCTGGGAATTGACAAATCAATATTTATAACCTAAACATTTCATCTAATGGTACTTATGTTTAAGTTGTGGAACAAGGAGTGAGTTGAGGCTGCTTCTGAAGTTTTGAGAGTGATTATACTTACTAATGGGACATTTTTTGTGAGATTCCACATCGATTGGTGAGGGGAACGAGTGTTAGCGAGGACACTGGGCCTCGAGTGCCGGGGGGTGGATTGTGAGATCCTATATCGGTTGAGGAGGAAAACGAATCATTCTTTATAAAGGGTATGGAGACCTCTCTCTAGCAAACATGTTTTAAAAACCTTGAGGCCCTAATCATGAGTTGCATGTTTTTTGTTGGATATTTGTATTAAAAGTAGAAAGAAAACTGTAATAGCCTAAGCCTACCGCTAGCAGATATTATCCTCTTTGAGCTTTCCCTTTCAGGCTTTCCCTCAAGGTTTTTAAAATGTGTCTGCTAGGGAGAGGTTTCCACACCCTTTTAAAGAATGTTTCGTTCCCTTCTTCAACCGAGGTGAGATCTCACATTTGTAGAGCTTGTATGTGATGACACATCTTCTTTGTGAGGTATCTCCTCTAAAATAATGGATGCATTGGATAATAGGCCATTACTAATTAAGCTGAAGGGGTTGGTGAGTTCTGTTATGTTCAAGCATCAAATTTTCTACATAGATACCATTTCAATCATAACTGCAGCCCACCAAGGATTAATACAGTCGCATTTGATTAGAAGTATCTCTATTTTGGTTTGAATCTTGTCACTTTCAACAACTTACCAAATTTACAGAAAGTGGTGTTTTTAATGATGAGATTGAATAATTTGTTTCCAAACTTTGTTTGCAAGCATTATCTTGGGAAAGTAACTTGAAGAACACTCATCTACGTAGTTTGGAAGTTCATTTTTTTTATTCCCAATAATGTCTGTGTGATATGAGGATTGTATGAGAGGTTCCTTTGCCAAAGCCCGCGTTCTCTATGCTCCTGTGGAAGAAATTGGCGATGTCAGAAGACTGTTACGAGCCTGTCATATTCATTTTATAGATTCATCTCAAACATATCCTGCAGAAAAAAATTATTCCATCTGTTTCTTTTTGGTTCAAGTTCTTAAGATAACCAAACATTTTTCACTTTTAAATTTCCTGAGCTTTTAAAGAAGTCATCATTGATGCATTTACAGAAGCTGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGTTAAAGGTATGTTAACAACTTCTAATACATTTCATTCCGAACTCAACCATCAAGGATCAAATATCAGAATGTTTTGTTTGTTACTTCGCGATTTGATTCGATAAATATCTTCGGAATGATTTTCTCATTATCAATATTTAGTTGCCTGCTGTTAGGAACAACGAACGTCCACATTAGTATAATATTGCCCACTTTAAGTATAAACTCCTGTGGCTTTACTTTTGGTTTTTCCAAAAGGTTTCATACCAATAGAAATAATGTGTCCTACTTATATATTCGTGACCTTCCCTTAATGAACTCCATCAATCCTTTGACACTTGCTACTGTTATAAATGCATCACCTAGAAAAATGTACACGATTTGGTTCGTTTTTTCTTCAATATGCTCATCTTTTCATGTACTTTCTAGTTCCTTCCATGTGTGAATCTCTGTTTACAATCCTGAATTGTTTGATTTCACTGTCAGGGCTGA

mRNA sequence

ATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGGATGGTAGTTTGCAGGTCTCTTTTCAGGGACTCTATGCTGATGATGGTTGGAGCCTGAATGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGAAGCTGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGTTAAAGGGCTGA

Coding sequence (CDS)

ATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGGATGGTAGTTTGCAGGTCTCTTTTCAGGGACTCTATGCTGATGATGGTTGGAGCCTGAATGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGAAGCTGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGTTAAAGGGCTGA

Protein sequence

MLNDLCRSGRDQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG

Homology

[Close]

BLAST of CmoCh08G006830 vs. ExPASy TrEMBL
Match: A0A6J1GRE7 (uncharacterized protein LOC111456441 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456441 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.1e-17
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 11 DQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHAS 70
          D+AGVA+ SLQVSFQGLY  +GWSLNANM GKKEF   ADQKKK KT++Q WRPV   AS
Sbjct: 8  DKAGVANDSLQVSFQGLYTYNGWSLNANMAGKKEFRRVADQKKKRKTITQAWRPVCTQAS 67

Query: 71 PSEEAGLVLEKDAKQKLKG 90
          PSE+  LV++ D  +   G
Sbjct: 68 PSED--LVVKNDRVESEDG 84

[Close]

BLAST of CmoCh08G006830 vs. ExPASy TrEMBL
Match: A0A6J1D7S4 (uncharacterized protein LOC111017681 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111017681 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 52/84 (61.90%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 6  CRSGRDQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPV 65
          C    D+AG+A+ SLQVSFQG YA +G SL  NMTG+KEF SAADQKKK KT+SQ WRPV
Sbjct: 3  CAVPVDKAGIANDSLQVSFQGHYAYNGLSLYTNMTGRKEFRSAADQKKKRKTISQAWRPV 62

Query: 66 YMHASPSEEA----GLVLEKDAKQ 86
            HASPSE+     G V  KD  Q
Sbjct: 63 CTHASPSEDLSVKDGRVESKDGNQ 86

[Close]

BLAST of CmoCh08G006830 vs. ExPASy TrEMBL
Match: A0A0A0K963 (KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447090 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 50/104 (48.08%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 2   LNDLCRSGRDQAGV----------ADGSLQVSF------QGLYADDGWSLNANMTGKKEF 61
           LN LC SGR    +           D  L+ +        GLYA +GW LNANMTGK EF
Sbjct: 44  LNALCSSGRQSQSLRMIVCRSLFRVDRFLKYTAPFVLHQTGLYAYNGWRLNANMTGKTEF 103

Query: 62  WSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG 90
            SAADQKKK KT+SQ WRPV  HA PSE+  L +E D  +   G
Sbjct: 104 RSAADQKKKRKTISQAWRPVCTHACPSED--LSVEDDRVESEDG 145

[Close]

BLAST of CmoCh08G006830 vs. ExPASy TrEMBL
Match: A0A5D3C0W5 (Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002070 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-10
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 26  GLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEE 75
           GLYA +GW LNANMTGK EF SAADQKKK KT+SQ WRPV  HA  SE+
Sbjct: 62  GLYAYNGWRLNANMTGKTEFKSAADQKKKRKTISQAWRPVCTHACSSED 110

[Close]

BLAST of CmoCh08G006830 vs. ExPASy TrEMBL
Match: A0A1S3CGC2 (activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103500600 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-10
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 26 GLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEE 75
          GLYA +GW LNANMTGK EF SAADQKKK KT+SQ WRPV  HA  SE+
Sbjct: 38 GLYAYNGWRLNANMTGKTEFKSAADQKKKRKTISQAWRPVCTHACSSED 86

[Close]

BLAST of CmoCh08G006830 vs. NCBI nr
Match: KAG6593476.1 (hypothetical protein SDJN03_12952, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.2 bits (448), Expect = 6.4e-41
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MLNDLCRSGRDQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQ 60
          MLNDLCRSGRDQAGVA+ SLQVSFQGLYADDGWSL ANMTGKKEFWSAADQKKKPKTVSQ
Sbjct: 1  MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQ 60

Query: 61 TWRPVYMHASPSEEAGLVLEKDAKQKLKG 90
          TWRPVYMHASPSEEAGLVLEKDAKQKLKG
Sbjct: 61 TWRPVYMHASPSEEAGLVLEKDAKQKLKG 89

[Close]

BLAST of CmoCh08G006830 vs. NCBI nr
Match: KAG7025820.1 (hypothetical protein SDJN02_12318 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 3.2e-32
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MLNDLCRSGRDQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQ 60
          MLNDLCRSGRDQAGVA+ SLQVSFQGLYADDGWSL ANMTGKKEFWSAADQKKKPKTVSQ
Sbjct: 1  MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQ 60

Query: 61 TWRPVYMHASPSE 74
          TWRPVYMHASPSE
Sbjct: 61 TWRPVYMHASPSE 73

[Close]

BLAST of CmoCh08G006830 vs. NCBI nr
Match: XP_022954065.1 (uncharacterized protein LOC111456441 isoform X2 [Cucurbita moschata])

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 11 DQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHAS 70
          D+AGVA+ SLQVSFQGLY  +GWSLNANM GKKEF   ADQKKK KT++Q WRPV   AS
Sbjct: 8  DKAGVANDSLQVSFQGLYTYNGWSLNANMAGKKEFRRVADQKKKRKTITQAWRPVCTQAS 67

Query: 71 PSEEAGLVLEKDAKQKLKG 90
          PSE+  LV++ D  +   G
Sbjct: 68 PSED--LVVKNDRVESEDG 84

[Close]

BLAST of CmoCh08G006830 vs. NCBI nr
Match: XP_022149236.1 (uncharacterized protein LOC111017681 isoform X3 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 4.2e-16
Identity = 52/84 (61.90%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 6  CRSGRDQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPV 65
          C    D+AG+A+ SLQVSFQG YA +G SL  NMTG+KEF SAADQKKK KT+SQ WRPV
Sbjct: 3  CAVPVDKAGIANDSLQVSFQGHYAYNGLSLYTNMTGRKEFRSAADQKKKRKTISQAWRPV 62

Query: 66 YMHASPSEEA----GLVLEKDAKQ 86
            HASPSE+     G V  KD  Q
Sbjct: 63 CTHASPSEDLSVKDGRVESKDGNQ 86

[Close]

BLAST of CmoCh08G006830 vs. NCBI nr
Match: XP_023549271.1 (activating signal cointegrator 1 complex subunit 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 11 DQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHAS 70
          D+AGVA+ SLQVSFQGLY  +GWSLNANM  KKEF   ADQKKK KT++Q WRPV   AS
Sbjct: 8  DKAGVANDSLQVSFQGLYTYNGWSLNANMASKKEFRRVADQKKKRKTITQAWRPVCTQAS 67

Query: 71 PSEEAGLVLEKDAKQKLKG 90
          PSE+  L+++ D  +   G
Sbjct: 68 PSED--LLVKNDRVESEDG 84

The following BLAST results are available for this feature:

BLAST of CmoCh08G006830 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G006830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRE7	9.1e-17	63.29	uncharacterized protein LOC111456441 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1D7S4	2.0e-16	61.90	uncharacterized protein LOC111017681 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A0A0K963	1.5e-11	48.08	KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447090 PE=4 SV=...	[more]
A0A5D3C0W5	2.2e-10	73.47	Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa O...	[more]
A0A1S3CGC2	2.2e-10	73.47	activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of CmoCh08G006830 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593476.1	6.4e-41	96.63	hypothetical protein SDJN03_12952, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7025820.1	3.2e-32	95.89	hypothetical protein SDJN02_12318 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022954065.1	1.9e-16	63.29	uncharacterized protein LOC111456441 isoform X2 [Cucurbita moschata]	[more]
XP_022149236.1	4.2e-16	61.90	uncharacterized protein LOC111017681 isoform X3 [Momordica charantia]	[more]
XP_023549271.1	2.1e-15	60.76	activating signal cointegrator 1 complex subunit 1-like isoform X2 [Cucurbita pe...	[more]

BLAST of CmoCh08G006830 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G006830.1	CmoCh08G006830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding