CmoCh08G006610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G006610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein L37
Location	Cmo_Chr08: 4280006 .. 4281225 (+)
RNA-Seq Expression	CmoCh08G006610
Synteny	CmoCh08G006610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTTCTCTTCTGGAAGCTGCAGATAGAACTTTTCCACCCTAGGGTTTCTTCGTCCTGCATCAATGGTACATTACTTTCTTCTCTGTTTCGATTTATGCTTCTGTGCAGTTGGATTCGTCGTTTTATTCTTGCTCGATTAATCTACAGGGTAAGGGTACGGGAAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGCGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGGTGTTCAGCATGTGCTTTCCCTGCTGCCCGCAAGCGAAAGTGTAAGCACACTCGATGTTTCGCCTTTTTTGTCACTGTTCACTTTCTATAATTCGGTTTAAATCGACTATTTTGGCGTTTGTTTATTTTGATTCAATGTAATGCTGCCTTGAGTAACCATTGATGTGTATGGTAGTTAGTTGCTAGTGTTATTGTATTAAGCCTGATAAGATGGTTGAGTCTGCGAATGTGAATGAGGTTCATTTGTTCGCTGGAGTAACGTGAAGTGATCATATTGATTTTGGTTTTCCGTGGAGATTGAATTAATCTTGATTCATCTCGTTGGCGTTGGGATTATTTAGATAACTGGAGTGTGAAGGCCATTAGGAGAAAGACAACCGGAACTGGAAGGATGAGGTACATGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTATGATATTGTATTTGTAATTGATTCAATTTTTCGCACCATTTACTGCATTTACGTACTGGGTTTCAGAATTACCTGGGTTTTCATGCCTTGAAATTGCTTTGTGTTTGTCATTAGGTACTGAAGCTGCACCCAGGAACAAGGGAGCTGCAGCATCAGCATAAGGTTTTGGAAGGAGTTCAACTTAATTTCAGTTCCCAACTATAGCTTTCAGTAGGGGCTTTACTCGTCTGAGGATCATTTCATATAATTTTGTTTTCTAGTTTTGCCTTTTCATGATTTAGTTGAACGCGGTTTCTTTAATATTTAATGTTTTGAAATTTGGACAAAGATGAATCAGATTATTCGTACTCTGCTACTTGTTTTTGTGCTATTTTTAGCGTGTTCTTATTCTTCCCCATCCTTCCAAGATTATTTTCAGCAAGTGTTGGGATGATCGATGTTGAATCACTAGATTGAATTAGTTCATTTCGAAATTGTTTAAATCTTGCCTAGGAGTAGTTTGTTTTGGTTCCCCATCCCCAGACGCTCCC

mRNA sequence

CATTTTCTCTTCTGGAAGCTGCAGATAGAACTTTTCCACCCTAGGGTTTCTTCGTCCTGCATCAATGGGTAAGGGTACGGGAAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGCGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGGTGTTCAGCATGTGCTTTCCCTGCTGCCCGCAAGCGAAAGTATAACTGGAGTGTGAAGGCCATTAGGAGAAAGACAACCGGAACTGGAAGGATGAGGTACATGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTACTGAAGCTGCACCCAGGAACAAGGGAGCTGCAGCATCAGCATAAGGTTTTGGAAGGAGTTCAACTTAATTTCAGTTCCCAACTATAGCTTTCAGTAGGGGCTTTACTCGTCTGAGGATCATTTCATATAATTTTGTTTTCTAGTTTTGCCTTTTCATGATTTAGTTGAACGCGGTTTCTTTAATATTTAATGTTTTGAAATTTGGACAAAGATGAATCAGATTATTCGTACTCTGCTACTTGTTTTTGTGCTATTTTTAGCGTGTTCTTATTCTTCCCCATCCTTCCAAGATTATTTTCAGCAAGTGTTGGGATGATCGATGTTGAATCACTAGATTGAATTAGTTCATTTCGAAATTGTTTAAATCTTGCCTAGGAGTAGTTTGTTTTGGTTCCCCATCCCCAGACGCTCCC

Coding sequence (CDS)

ATGGGTAAGGGTACGGGAAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGCGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGGTGTTCAGCATGTGCTTTCCCTGCTGCCCGCAAGCGAAAGTATAACTGGAGTGTGAAGGCCATTAGGAGAAAGACAACCGGAACTGGAAGGATGAGGTACATGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTACTGAAGCTGCACCCAGGAACAAGGGAGCTGCAGCATCAGCATAA

Protein sequence

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA

Homology

[Close]

BLAST of CmoCh08G006610 vs. ExPASy Swiss-Prot
Match: Q43292 (60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-42
Identity = 84/95 (88.42%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGTEA PRNKG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]

BLAST of CmoCh08G006610 vs. ExPASy Swiss-Prot
Match: Q8LEM8 (60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-42
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGTEA PR+K +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]

BLAST of CmoCh08G006610 vs. ExPASy Swiss-Prot
Match: Q8LFH7 (60S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-41
Identity = 82/95 (86.32%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+R+VPRRFK+ FREGT+A PRNK AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]

BLAST of CmoCh08G006610 vs. ExPASy Swiss-Prot
Match: Q90YT1 (60S ribosomal protein L37 OS=Ictalurus punctatus OX=7998 GN=rpl37 PE=3 SV=3)

HSP 1 Score: 131.3 bits (329), Expect = 5.6e-30
Identity = 65/95 (68.42%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C +PA RKRKYNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMR+M+ V RRF++GFREGT   PR    AAS+
Sbjct: 61 TGRMRHMKVVFRRFRNGFREGTVPKPRRAAVAASS 95

[Close]

BLAST of CmoCh08G006610 vs. ExPASy Swiss-Prot
Match: P79244 (60S ribosomal protein L37 OS=Bos taurus OX=9913 GN=RPL37 PE=3 SV=4)

HSP 1 Score: 129.0 bits (323), Expect = 2.8e-29
Identity = 63/95 (66.32%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C +PA RKRKYNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMR+++ V RRF+ GFREGT   P+    AAS+
Sbjct: 61 TGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAASS 95

[Close]

BLAST of CmoCh08G006610 vs. ExPASy TrEMBL
Match: A0A6J1HHN6 (Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111464162 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]

BLAST of CmoCh08G006610 vs. ExPASy TrEMBL
Match: A0A6J1JVQ3 (Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111488750 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.9e-45
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPRNKG+AASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGSAASA 95

[Close]

BLAST of CmoCh08G006610 vs. ExPASy TrEMBL
Match: A0A6J1GMN9 (Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111455796 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.9e-45
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPRNKG+AASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGSAASA 95

[Close]

BLAST of CmoCh08G006610 vs. ExPASy TrEMBL
Match: A0A6J1KMJ9 (Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111494673 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.8e-45
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKS+CSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSQCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]

BLAST of CmoCh08G006610 vs. ExPASy TrEMBL
Match: A0A6J1KAY5 (Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111493277 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.9e-45
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPR+KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]

BLAST of CmoCh08G006610 vs. NCBI nr
Match: XP_022964011.1 (60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_023513643.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo] >KAG6593459.1 60S ribosomal protein L37-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191.8 bits (486), Expect = 2.7e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]

BLAST of CmoCh08G006610 vs. NCBI nr
Match: XP_022953178.1 (60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_022992450.1 60S ribosomal protein L37-3-like [Cucurbita maxima] >XP_023548197.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo] >KAG6575534.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014078.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.7 bits (483), Expect = 6.0e-45
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPRNKG+AASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGSAASA 95

[Close]

BLAST of CmoCh08G006610 vs. NCBI nr
Match: XP_023000413.1 (60S ribosomal protein L37-3-like [Cucurbita maxima])

HSP 1 Score: 190.3 bits (482), Expect = 7.8e-45
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKS+CSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSQCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]

BLAST of CmoCh08G006610 vs. NCBI nr
Match: XP_022150495.1 (60S ribosomal protein L37-3 [Momordica charantia] >XP_022948866.1 60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_022998691.1 60S ribosomal protein L37-3-like [Cucurbita maxima] >XP_023523625.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo] >KAG6606766.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.9 bits (481), Expect = 1.0e-44
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPR+KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]

BLAST of CmoCh08G006610 vs. NCBI nr
Match: XP_004141772.1 (60S ribosomal protein L37-3 [Cucumis sativus] >XP_008462159.1 PREDICTED: 60S ribosomal protein L37-3-like [Cucumis melo] >XP_038896143.1 60S ribosomal protein L37-3-like [Benincasa hispida] >KAA0059300.1 60S ribosomal protein L37-3 [Cucumis melo var. makuwa] >KGN45374.1 hypothetical protein Csa_016423 [Cucumis sativus] >TYK04028.1 60S ribosomal protein L37-3 [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 1.3e-44
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]

BLAST of CmoCh08G006610 vs. TAIR 10
Match: AT1G52300.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 173.3 bits (438), Expect = 9.2e-44
Identity = 84/95 (88.42%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGTEA PRNKG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]

BLAST of CmoCh08G006610 vs. TAIR 10
Match: AT3G16080.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-43
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGTEA PR+K +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]

BLAST of CmoCh08G006610 vs. TAIR 10
Match: AT1G15250.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 170.2 bits (430), Expect = 7.8e-43
Identity = 82/95 (86.32%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+R+VPRRFK+ FREGT+A PRNK AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

The following BLAST results are available for this feature:

BLAST of CmoCh08G006610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43292	1.3e-42	88.42	60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2	[more]
Q8LEM8	2.2e-42	87.37	60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1	[more]
Q8LFH7	1.1e-41	86.32	60S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1	[more]
Q90YT1	5.6e-30	68.42	60S ribosomal protein L37 OS=Ictalurus punctatus OX=7998 GN=rpl37 PE=3 SV=3	[more]
P79244	2.8e-29	66.32	60S ribosomal protein L37 OS=Bos taurus OX=9913 GN=RPL37 PE=3 SV=4	[more]

BLAST of CmoCh08G006610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HHN6	1.3e-45	100.00	Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111464162 PE=3 SV=1	[more]
A0A6J1JVQ3	2.9e-45	98.95	Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111488750 PE=3 SV=1	[more]
A0A6J1GMN9	2.9e-45	98.95	Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111455796 PE=3 SV=1	[more]
A0A6J1KMJ9	3.8e-45	98.95	Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111494673 PE=3 SV=1	[more]
A0A6J1KAY5	4.9e-45	98.95	Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111493277 PE=3 SV=1	[more]

BLAST of CmoCh08G006610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964011.1	2.7e-45	100.00	60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_023513643.1 60S riboso...	[more]
XP_022953178.1	6.0e-45	98.95	60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_022992450.1 60S riboso...	[more]
XP_023000413.1	7.8e-45	98.95	60S ribosomal protein L37-3-like [Cucurbita maxima]	[more]
XP_022150495.1	1.0e-44	98.95	60S ribosomal protein L37-3 [Momordica charantia] >XP_022948866.1 60S ribosomal ...	[more]
XP_004141772.1	1.3e-44	97.89	60S ribosomal protein L37-3 [Cucumis sativus] >XP_008462159.1 PREDICTED: 60S rib...	[more]

BLAST of CmoCh08G006610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52300.1	9.2e-44	88.42	Zinc-binding ribosomal protein family protein	[more]
AT3G16080.1	1.6e-43	87.37	Zinc-binding ribosomal protein family protein	[more]
AT1G15250.1	7.8e-43	86.32	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011331	Ribosomal protein L37ae/L37e	GENE3D	2.20.25.30		coord: 1..87 e-value: 3.5E-46 score: 157.4
IPR001569	Ribosomal protein L37e	PFAM	PF01907	Ribosomal_L37e	coord: 3..53 e-value: 1.0E-25 score: 89.6
IPR001569	Ribosomal protein L37e	HAMAP	MF_00547	Ribosomal_L37e	coord: 2..53 score: 16.159836
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..95
None	No IPR available	PANTHER	PTHR10768	60S RIBOSOMAL PROTEIN L37	coord: 1..95
None	No IPR available	PANTHER	PTHR10768:SF28	RIBOSOMAL PROTEIN L37	coord: 1..95
IPR018267	Ribosomal protein L37e, conserved site	PROSITE	PS01077	RIBOSOMAL_L37E	coord: 4..23
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G006610.1	CmoCh08G006610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome