CmoCh08G006590 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G006590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ATP-dependent RNA helicase DDX11
Location	Cmo_Chr08: 4275380 .. 4275958 (-)
RNA-Seq Expression	CmoCh08G006590
Synteny	CmoCh08G006590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCTAAAAGAAACCGTCCACAAAACTCTTGAAAACTTCAAGCATTTATTCTTCAAAGGGTTTCAAAAGCTGCAGAAACCCACTTCCTTCCTCCTCTTTCCATGCAGAAAAGGAAACCCACAGCCACAGCATACCCATCCAACAGAGAGAATCTACATTGATTTTTATGATGAGTGGCAGTCCACACTGCATAAAGCAGCAAAGAGAAGCATTGACAGAGGCAGTGTGAGAACATCCAAGGAAAACATGAAGGAACAAGGCCTTCCAAGGATCAGACAAGAGAAGGCTGTGAAAGAGAAGAAGAAACAAGGAAATACCCATTTCAGAAAAGGTGATGTTAAAAGCTGTAGTAGGAGAAGTGATGGATTAGTACAAAAAATGAAGGAGTTGGAGATGTTGGATAGAGGAGATATGGAACAAGAGTTGGATATTGAAGAAGCAATTCATTACTACTCTCGCTTAAGAAGTCCTGTTTATCTTGAAATTGTGGACAGGTTTTTCATGGACATACACTCTGAATTCTCTGTTCCTGAGGCTTCTGCTAAGAGTATGAACAGCTCAAAGAGGAGGTTATAG

mRNA sequence

ATGCTGCTAAAAGAAACCGTCCACAAAACTCTTGAAAACTTCAAGCATTTATTCTTCAAAGGGTTTCAAAAGCTGCAGAAACCCACTTCCTTCCTCCTCTTTCCATGCAGAAAAGGAAACCCACAGCCACAGCATACCCATCCAACAGAGAGAATCTACATTGATTTTTATGATGAGTGGCAGTCCACACTGCATAAAGCAGCAAAGAGAAGCATTGACAGAGGCAGTGTGAGAACATCCAAGGAAAACATGAAGGAACAAGGCCTTCCAAGGATCAGACAAGAGAAGGCTGTGAAAGAGAAGAAGAAACAAGGAAATACCCATTTCAGAAAAGGTGATGTTAAAAGCTGTAGTAGGAGAAGTGATGGATTAGTACAAAAAATGAAGGAGTTGGAGATGTTGGATAGAGGAGATATGGAACAAGAGTTGGATATTGAAGAAGCAATTCATTACTACTCTCGCTTAAGAAGTCCTGTTTATCTTGAAATTGTGGACAGGTTTTTCATGGACATACACTCTGAATTCTCTGTTCCTGAGGCTTCTGCTAAGAGTATGAACAGCTCAAAGAGGAGGTTATAG

Coding sequence (CDS)

ATGCTGCTAAAAGAAACCGTCCACAAAACTCTTGAAAACTTCAAGCATTTATTCTTCAAAGGGTTTCAAAAGCTGCAGAAACCCACTTCCTTCCTCCTCTTTCCATGCAGAAAAGGAAACCCACAGCCACAGCATACCCATCCAACAGAGAGAATCTACATTGATTTTTATGATGAGTGGCAGTCCACACTGCATAAAGCAGCAAAGAGAAGCATTGACAGAGGCAGTGTGAGAACATCCAAGGAAAACATGAAGGAACAAGGCCTTCCAAGGATCAGACAAGAGAAGGCTGTGAAAGAGAAGAAGAAACAAGGAAATACCCATTTCAGAAAAGGTGATGTTAAAAGCTGTAGTAGGAGAAGTGATGGATTAGTACAAAAAATGAAGGAGTTGGAGATGTTGGATAGAGGAGATATGGAACAAGAGTTGGATATTGAAGAAGCAATTCATTACTACTCTCGCTTAAGAAGTCCTGTTTATCTTGAAATTGTGGACAGGTTTTTCATGGACATACACTCTGAATTCTCTGTTCCTGAGGCTTCTGCTAAGAGTATGAACAGCTCAAAGAGGAGGTTATAG

Protein sequence

MLLKETVHKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKEQGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL

Homology

[Close]

BLAST of CmoCh08G006590 vs. ExPASy TrEMBL
Match: A0A6J1KFS0 (uncharacterized protein LOC111494654 OS=Cucurbita maxima OX=3661 GN=LOC111494654 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.0e-97
Identity = 186/195 (95.38%), Postives = 189/195 (96.92%), Query Frame = 0


Query: 1   MLLKETVHKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEW 60
           MLL+ET+HKTLENFKHLFFKGFQKLQKPTSFLLFPC KGNPQPQHTHPTERIYIDFYDEW
Sbjct: 1   MLLRETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEW 60

Query: 61  QSTLHKAAKRSIDRGSVRTSKENMK---EQGLPRIRQEKAVKEKKKQGNTHFRKGDVKSC 120
           QSTLHKAAKRSIDRGSVRTSKEN K   EQGLPRIRQEKAV EKKKQGNTHFRKGDVKSC
Sbjct: 61  QSTLHKAAKRSIDRGSVRTSKENKKEQEEQGLPRIRQEKAVTEKKKQGNTHFRKGDVKSC 120

Query: 121 SRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV 180
           SRRSDGLVQKMKELEMLDRGDMEQELD+EEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV
Sbjct: 121 SRRSDGLVQKMKELEMLDRGDMEQELDLEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV 180

Query: 181 PEASAKSMNSSKRRL 193
           PEASAKSMNSSKRRL
Sbjct: 181 PEASAKSMNSSKRRL 195

[Close]

BLAST of CmoCh08G006590 vs. ExPASy TrEMBL
Match: A0A5D3BXY4 (Putative ATP-dependent RNA helicase DDX11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002290 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.0e-73
Identity = 153/206 (74.27%), Postives = 171/206 (83.01%), Query Frame = 0


Query: 1   MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIY 60
           MLLKET+       HKTLE+FK LFFKGFQKLQKPTS + F C KG  +PQHTHPT+R+Y
Sbjct: 1   MLLKETIHKTNNLFHKTLESFKDLFFKGFQKLQKPTSLITFSCSKG--KPQHTHPTDRLY 60

Query: 61  IDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------QGLPRIRQEKAVKEKKKQGN 120
           IDFYDEWQSTL KAAKRSID+GSV  SKEN+K+       Q  PR +QEKAVKEKKK G 
Sbjct: 61  IDFYDEWQSTLQKAAKRSIDKGSVIASKENVKQEDTIVAIQSPPRSKQEKAVKEKKKPGA 120

Query: 121 THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR 180
           +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+
Sbjct: 121 SHLRKGDVKNSSTRSNGLVEKMKELEMLDRSDMEQELDIEEAIHYYSRLRSPVYLEIVDK 180

Query: 181 FFMDIHSEFSVPEASAKSMNSSKRRL 193
           FFMD+HSE SVPE SA+SMNSSKRR+
Sbjct: 181 FFMDMHSEISVPEPSARSMNSSKRRM 204

[Close]

BLAST of CmoCh08G006590 vs. ExPASy TrEMBL
Match: A0A1S4E3Q5 (uncharacterized protein LOC107991904 OS=Cucumis melo OX=3656 GN=LOC107991904 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.0e-73
Identity = 153/206 (74.27%), Postives = 171/206 (83.01%), Query Frame = 0


Query: 1   MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIY 60
           MLLKET+       HKTLE+FK LFFKGFQKLQKPTS + F C KG  +PQHTHPT+R+Y
Sbjct: 1   MLLKETIHKTNNLFHKTLESFKDLFFKGFQKLQKPTSLITFSCSKG--KPQHTHPTDRLY 60

Query: 61  IDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------QGLPRIRQEKAVKEKKKQGN 120
           IDFYDEWQSTL KAAKRSID+GSV  SKEN+K+       Q  PR +QEKAVKEKKK G 
Sbjct: 61  IDFYDEWQSTLQKAAKRSIDKGSVIASKENVKQEDTIVAIQSPPRSKQEKAVKEKKKPGA 120

Query: 121 THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR 180
           +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+
Sbjct: 121 SHLRKGDVKNSSTRSNGLVEKMKELEMLDRSDMEQELDIEEAIHYYSRLRSPVYLEIVDK 180

Query: 181 FFMDIHSEFSVPEASAKSMNSSKRRL 193
           FFMD+HSE SVPE SA+SMNSSKRR+
Sbjct: 181 FFMDMHSEISVPEPSARSMNSSKRRM 204

[Close]

BLAST of CmoCh08G006590 vs. ExPASy TrEMBL
Match: A0A6J1DP45 (uncharacterized protein LOC111022197 OS=Momordica charantia OX=3673 GN=LOC111022197 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 8.6e-73
Identity = 154/206 (74.76%), Postives = 168/206 (81.55%), Query Frame = 0


Query: 1   MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIY 60
           MLLK T+       HKTLENFK+LF +GFQKLQKPTS   F CRKGNP   HTHPT+R+Y
Sbjct: 101 MLLKGTIHKTNYLFHKTLENFKYLFSRGFQKLQKPTSLNPFSCRKGNP---HTHPTDRLY 160

Query: 61  IDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------QGLPRIRQEKAVKEKKKQGN 120
           IDFYDEWQSTLHKAAKRSID GS  TSK NMK+       Q  P+ RQEKAVKEKKK G 
Sbjct: 161 IDFYDEWQSTLHKAAKRSIDSGSDMTSKGNMKQEDAIVAKQSPPKARQEKAVKEKKKPGI 220

Query: 121 THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR 180
           +H RKGD+K+ S R +GLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVD+
Sbjct: 221 SHLRKGDLKNNSMRGNGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDK 280

Query: 181 FFMDIHSEFSVPEASAKSMNSSKRRL 193
           FFMDIHSEFSVPE SA S+NSSKRR+
Sbjct: 281 FFMDIHSEFSVPEPSAGSLNSSKRRM 303

[Close]

BLAST of CmoCh08G006590 vs. ExPASy TrEMBL
Match: A0A0A0KAF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446870 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.5e-72
Identity = 150/206 (72.82%), Postives = 171/206 (83.01%), Query Frame = 0


Query: 1   MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIY 60
           MLLK+T+       HKTLENFK+LFFKGFQKLQKPTS +   C KG  +PQHTHPT+R+Y
Sbjct: 1   MLLKKTIHKTNNLFHKTLENFKNLFFKGFQKLQKPTSLITLSCSKG--KPQHTHPTDRLY 60

Query: 61  IDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------QGLPRIRQEKAVKEKKKQGN 120
           IDFYDEWQSTL KAAKRSID+GS+  SKEN+K+       Q  PR +QEKAVKEKKK G 
Sbjct: 61  IDFYDEWQSTLQKAAKRSIDKGSMIASKENVKQEDTNVAIQSPPRSKQEKAVKEKKKPGA 120

Query: 121 THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR 180
           +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+
Sbjct: 121 SHLRKGDVKNNSTRSNGLVEKMKELEMLDRSDMEQELDIEEAIHYYSRLRSPVYLEIVDK 180

Query: 181 FFMDIHSEFSVPEASAKSMNSSKRRL 193
           FFMD+HSE SVPE SA+S+NSSKRR+
Sbjct: 181 FFMDMHSEISVPEPSARSVNSSKRRI 204

[Close]

BLAST of CmoCh08G006590 vs. NCBI nr
Match: KAG6593457.1 (hypothetical protein SDJN03_12933, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025797.1 hypothetical protein SDJN02_12295, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 371.3 bits (952), Expect = 5.0e-99
Identity = 189/195 (96.92%), Postives = 191/195 (97.95%), Query Frame = 0


Query: 1   MLLKETVHKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEW 60
           MLLKET+HKTLENFKHLFFKGFQKLQKPTSFLLFPC KGNPQPQHTHPTERIYIDFYDEW
Sbjct: 1   MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEW 60

Query: 61  QSTLHKAAKRSIDRGSVRTSKENMK---EQGLPRIRQEKAVKEKKKQGNTHFRKGDVKSC 120
           QSTLHKAAKRSIDRGS+RTSKENMK   EQGLPRIRQEKAVKEKKKQGNTHFRKGDVKSC
Sbjct: 61  QSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKAVKEKKKQGNTHFRKGDVKSC 120

Query: 121 SRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV 180
           SRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV
Sbjct: 121 SRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV 180

Query: 181 PEASAKSMNSSKRRL 193
           PEASAKSMNSSKRRL
Sbjct: 181 PEASAKSMNSSKRRL 195

[Close]

BLAST of CmoCh08G006590 vs. NCBI nr
Match: XP_023000396.1 (uncharacterized protein LOC111494654 [Cucurbita maxima])

HSP 1 Score: 365.9 bits (938), Expect = 2.1e-97
Identity = 186/195 (95.38%), Postives = 189/195 (96.92%), Query Frame = 0


Query: 1   MLLKETVHKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEW 60
           MLL+ET+HKTLENFKHLFFKGFQKLQKPTSFLLFPC KGNPQPQHTHPTERIYIDFYDEW
Sbjct: 1   MLLRETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEW 60

Query: 61  QSTLHKAAKRSIDRGSVRTSKENMK---EQGLPRIRQEKAVKEKKKQGNTHFRKGDVKSC 120
           QSTLHKAAKRSIDRGSVRTSKEN K   EQGLPRIRQEKAV EKKKQGNTHFRKGDVKSC
Sbjct: 61  QSTLHKAAKRSIDRGSVRTSKENKKEQEEQGLPRIRQEKAVTEKKKQGNTHFRKGDVKSC 120

Query: 121 SRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV 180
           SRRSDGLVQKMKELEMLDRGDMEQELD+EEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV
Sbjct: 121 SRRSDGLVQKMKELEMLDRGDMEQELDLEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV 180

Query: 181 PEASAKSMNSSKRRL 193
           PEASAKSMNSSKRRL
Sbjct: 181 PEASAKSMNSSKRRL 195

[Close]

BLAST of CmoCh08G006590 vs. NCBI nr
Match: XP_038900276.1 (uncharacterized protein LOC120087356 [Benincasa hispida])

HSP 1 Score: 288.9 bits (738), Expect = 3.2e-74
Identity = 154/206 (74.76%), Postives = 169/206 (82.04%), Query Frame = 0


Query: 1   MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIY 60
           MLLKET+       HKTLENFK  FFKGFQKLQKPTS + F C KG PQ QHTHPT+R+Y
Sbjct: 1   MLLKETIHKTNNLFHKTLENFKDFFFKGFQKLQKPTSLITFSCSKGKPQ-QHTHPTDRLY 60

Query: 61  IDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------QGLPRIRQEKAVKEKKKQGN 120
           IDFYDEWQSTL KAAKRS+D G+V TSKEN+K+       Q  PR RQEK VKEKKK G 
Sbjct: 61  IDFYDEWQSTLQKAAKRSVDGGNVMTSKENVKQEDTNVAKQSPPRSRQEKVVKEKKKPGA 120

Query: 121 THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR 180
           +H RKGDVK+ S RS+GLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVD+
Sbjct: 121 SHLRKGDVKNSSTRSNGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDK 180

Query: 181 FFMDIHSEFSVPEASAKSMNSSKRRL 193
           FFMD+HSE SVPE S +S+NSSKRRL
Sbjct: 181 FFMDMHSEISVPEPSTRSVNSSKRRL 205

[Close]

BLAST of CmoCh08G006590 vs. NCBI nr
Match: XP_016902859.1 (PREDICTED: uncharacterized protein LOC107991904 [Cucumis melo] >KAA0059298.1 putative ATP-dependent RNA helicase DDX11 [Cucumis melo var. makuwa] >TYK04030.1 putative ATP-dependent RNA helicase DDX11 [Cucumis melo var. makuwa])

HSP 1 Score: 286.2 bits (731), Expect = 2.1e-73
Identity = 153/206 (74.27%), Postives = 171/206 (83.01%), Query Frame = 0


Query: 1   MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIY 60
           MLLKET+       HKTLE+FK LFFKGFQKLQKPTS + F C KG  +PQHTHPT+R+Y
Sbjct: 1   MLLKETIHKTNNLFHKTLESFKDLFFKGFQKLQKPTSLITFSCSKG--KPQHTHPTDRLY 60

Query: 61  IDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------QGLPRIRQEKAVKEKKKQGN 120
           IDFYDEWQSTL KAAKRSID+GSV  SKEN+K+       Q  PR +QEKAVKEKKK G 
Sbjct: 61  IDFYDEWQSTLQKAAKRSIDKGSVIASKENVKQEDTIVAIQSPPRSKQEKAVKEKKKPGA 120

Query: 121 THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR 180
           +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+
Sbjct: 121 SHLRKGDVKNSSTRSNGLVEKMKELEMLDRSDMEQELDIEEAIHYYSRLRSPVYLEIVDK 180

Query: 181 FFMDIHSEFSVPEASAKSMNSSKRRL 193
           FFMD+HSE SVPE SA+SMNSSKRR+
Sbjct: 181 FFMDMHSEISVPEPSARSMNSSKRRM 204

[Close]

BLAST of CmoCh08G006590 vs. NCBI nr
Match: XP_022155064.1 (uncharacterized protein LOC111022197 [Momordica charantia])

HSP 1 Score: 283.1 bits (723), Expect = 1.8e-72
Identity = 154/206 (74.76%), Postives = 168/206 (81.55%), Query Frame = 0


Query: 1   MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIY 60
           MLLK T+       HKTLENFK+LF +GFQKLQKPTS   F CRKGNP   HTHPT+R+Y
Sbjct: 101 MLLKGTIHKTNYLFHKTLENFKYLFSRGFQKLQKPTSLNPFSCRKGNP---HTHPTDRLY 160

Query: 61  IDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------QGLPRIRQEKAVKEKKKQGN 120
           IDFYDEWQSTLHKAAKRSID GS  TSK NMK+       Q  P+ RQEKAVKEKKK G 
Sbjct: 161 IDFYDEWQSTLHKAAKRSIDSGSDMTSKGNMKQEDAIVAKQSPPKARQEKAVKEKKKPGI 220

Query: 121 THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR 180
           +H RKGD+K+ S R +GLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVD+
Sbjct: 221 SHLRKGDLKNNSMRGNGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDK 280

Query: 181 FFMDIHSEFSVPEASAKSMNSSKRRL 193
           FFMDIHSEFSVPE SA S+NSSKRR+
Sbjct: 281 FFMDIHSEFSVPEPSAGSLNSSKRRM 303

[Close]

BLAST of CmoCh08G006590 vs. TAIR 10
Match: AT1G15260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-14
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 101 KKKQGNTHFRK-----GDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRL 160
           +K   N H +K        +   +R D L QKMK+L M+D  D++  LD+ EA+  YS +
Sbjct: 78  QKSLNNQHKKKPKKVAEPFEDAKKRGDALAQKMKDLNMVDLRDVDHALDVREALRCYSSI 137

Query: 161 RSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRR 192
           RSPVYL+IVD FF D++ EFS P  SAK +N S+R+
Sbjct: 138 RSPVYLDIVDNFFTDMYYEFSDPRTSAK-INGSRRK 172

[Close]

BLAST of CmoCh08G006590 vs. TAIR 10
Match: AT3G16070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15260.1); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-13
Identity = 55/167 (32.93%), Postives = 84/167 (50.30%), Query Frame = 0


Query: 8   HKTLENFKHLFFKGFQKLQKP-TSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHK 67
           H+TL + K +  +  +KL +P T F    CR       ++   + IY  F + W+S L  
Sbjct: 10  HRTLHSLKSIIIRAGKKLPRPKTHFSCTFCR------SNSLDGDNIYASFLNIWESDL-- 69

Query: 68  AAKRSIDRGSVRTSKENMKEQGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQ 127
                          EN  E  L   + E  V+E+++       +      SR  D + +
Sbjct: 70  ---------------ENSIEGPL---KLEHKVQEQEQYHQVKKTEACSSYSSRDCDTMEK 129

Query: 128 KMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHS 174
           K+ E+ M +  D+EQ LD+EEA+HYYSR+ SPVYL IVD+FF D++S
Sbjct: 130 KINEMYMTETVDIEQALDVEEALHYYSRISSPVYLNIVDKFFTDLYS 150

[Close]

BLAST of CmoCh08G006590 vs. TAIR 10
Match: AT3G24535.1 (unknown protein; Has 28 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 5.8e-05
Identity = 24/69 (34.78%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 127 KMKELEMLDRGDMEQE----LDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASA 186
           K+KE+E +   D+  +     D+ E +H YSRLR   YL++V+ FFM+++S+F  P    
Sbjct: 105 KLKEMEKMMNDDIISDEYYVSDVIEFLHCYSRLRYTAYLDVVENFFMEVYSDFFSPHHLV 164

Query: 187 KSMNSSKRR 192
            +  + +RR
Sbjct: 165 GTRTAVQRR 173

The following BLAST results are available for this feature:

BLAST of CmoCh08G006590 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G006590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KFS0	1.0e-97	95.38	uncharacterized protein LOC111494654 OS=Cucurbita maxima OX=3661 GN=LOC111494654...	[more]
A0A5D3BXY4	1.0e-73	74.27	Putative ATP-dependent RNA helicase DDX11 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S4E3Q5	1.0e-73	74.27	uncharacterized protein LOC107991904 OS=Cucumis melo OX=3656 GN=LOC107991904 PE=...	[more]
A0A6J1DP45	8.6e-73	74.76	uncharacterized protein LOC111022197 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A0A0KAF5	2.5e-72	72.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446870 PE=4 SV=1	[more]

BLAST of CmoCh08G006590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593457.1	5.0e-99	96.92	hypothetical protein SDJN03_12933, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023000396.1	2.1e-97	95.38	uncharacterized protein LOC111494654 [Cucurbita maxima]	[more]
XP_038900276.1	3.2e-74	74.76	uncharacterized protein LOC120087356 [Benincasa hispida]	[more]
XP_016902859.1	2.1e-73	74.27	PREDICTED: uncharacterized protein LOC107991904 [Cucumis melo] >KAA0059298.1 put...	[more]
XP_022155064.1	1.8e-72	74.76	uncharacterized protein LOC111022197 [Momordica charantia]	[more]

BLAST of CmoCh08G006590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15260.1	4.0e-14	44.79	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G16070.1	4.5e-13	32.93	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G24535.1	5.8e-05	34.78	unknown protein; Has 28 Blast hits to 27 proteins in 8 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..116
None	No IPR available	PANTHER	PTHR35461	BNAANNG14610D PROTEIN	coord: 4..192
None	No IPR available	PANTHER	PTHR35461:SF1	LOW PROTEIN: ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN	coord: 4..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G006590.1	CmoCh08G006590.1	mRNA