CmoCh08G006450 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G006450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	nuclear pore complex protein NUP50A-like
Location	Cmo_Chr08: 4188636 .. 4190021 (-)
RNA-Seq Expression	CmoCh08G006450
Synteny	CmoCh08G006450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATGCTGAAAATGCAACATCTACAAAGAAGAGGGCTGCTGGAAGGGAACTATCACGCGATAACCCTGGGCTTGATGATGAAGATGATGTGTCTGAGCAAGCAACTGGAACATTTAAGCGGGCTAGTGATGAAGTGCTAGCCGGCAGAAGAATTGTCAAAGTACGTCGTGGTCAGACTGCCTCTACCCCATCTTCTAATCCCTTTGCAGGAATACGCTTGGTACCTCCAACCGATAATAGTGGAAGTGCTTCAGAAGGTAAAAGTACTGCGCAGGCAGTTGGTGAAAAAACAGGTTCAGATGAGGCAAATGGAAAGGATGTTTCCCATGAAGAGAAAAAGGATGGAGATCATAATGATGAGCCAGCAGAACATAAAATTGACACATCGGAGGCTGAATCTGGTACAAATGTGCAGAATGTTGATCAGAATAGCACTGATGTAAGTGAATCTGCCATACCTAAGGTAGATGATAACTTAGTTGCTGAAAGTAATAAAATTGAAAATGAAGTGCAAGCAGGAGAAGATAAGACTAAAAATGAGGAACTTATAGGAGGTGATAATGCTGAGAATGATGCTTGTGTTAGTGGCGGTAAGAATGAGAACGAGGATCCTGCACGAGGCAATGAGAATGAAAATGAAGAACCCTGTGAAGGAAATGAAATGCCAAACAAAGAAACTGGGGATCAAGAAAAGGTAGAACATGAAGAAAAGAAAGAAGAGGGAAGTGAAGCCGATACTAGTAAGGAGGCTTCTCCGTTGAGCTCATTCCAACAACTGTCAAGTAGCCAGAACGCCTTCACAGGTCTTGCAGGTACCGGATTTTCGACTACTACGTTCTCCTTCGGTAATGTACTCAAGGATGGGGCTGGTCTAAGTTCTAGTTTTGGTCTCTCTAATAATGGTAGCTCAGCCTTGTTTAATACTTCTTCCACTGTTTCCAAGAGTGAGAAAAGCGGTTTTCCATCAATGCAAGAGGTTGCAGTTGAAACTGGTGAAGAAAATGAACGTGTGGTTTTCAATGCTGATTCTATATTATTCGAGTTTCTCGACGGATCGTGGAAGGAACGTGGAAAAGGAGAGCTGAAAGTTAATGTCCCGACAATTGGTACTGGGCGAGCAAGGATTCTGATGAGGGCTAGAGGAAATTACAGGTTAATTTTGAATGCAAGTCTTTACCCTGACATGAAGCTCACAAACATGGACAAGAAGGGTATCACATTTGCCTGCATGAACAGCACTAGCGAAGGGAAGGATGGTCTTTCAACATTTGCTTTGAAGTTCAAGGACGCATCCATAGTGGAAGAGTTTCGTGCAGCAGTCACAGAGCATAAAGGCAAGGCTTCTTCTACAGTTCTGAAAACGCCAGAGAATTCTCCTTAA

mRNA sequence

ATGGGGGATGCTGAAAATGCAACATCTACAAAGAAGAGGGCTGCTGGAAGGGAACTATCACGCGATAACCCTGGGCTTGATGATGAAGATGATGTGTCTGAGCAAGCAACTGGAACATTTAAGCGGGCTAGTGATGAAGTGCTAGCCGGCAGAAGAATTGTCAAAGTACGTCGTGGTCAGACTGCCTCTACCCCATCTTCTAATCCCTTTGCAGGAATACGCTTGGTACCTCCAACCGATAATAGTGGAAGTGCTTCAGAAGGTAAAAGTACTGCGCAGGCAGTTGGTGAAAAAACAGGTTCAGATGAGGCAAATGGAAAGGATGTTTCCCATGAAGAGAAAAAGGATGGAGATCATAATGATGAGCCAGCAGAACATAAAATTGACACATCGGAGGCTGAATCTGGTACAAATGTGCAGAATGTTGATCAGAATAGCACTGATGTAAGTGAATCTGCCATACCTAAGGTAGATGATAACTTAGTTGCTGAAAGTAATAAAATTGAAAATGAAGTGCAAGCAGGAGAAGATAAGACTAAAAATGAGGAACTTATAGGAGGTGATAATGCTGAGAATGATGCTTGTGTTAGTGGCGGTAAGAATGAGAACGAGGATCCTGCACGAGGCAATGAGAATGAAAATGAAGAACCCTGTGAAGGAAATGAAATGCCAAACAAAGAAACTGGGGATCAAGAAAAGGTAGAACATGAAGAAAAGAAAGAAGAGGGAAGTGAAGCCGATACTAGTAAGGAGGCTTCTCCGTTGAGCTCATTCCAACAACTGTCAAGTAGCCAGAACGCCTTCACAGGTCTTGCAGGTACCGGATTTTCGACTACTACGTTCTCCTTCGGTAATGTACTCAAGGATGGGGCTGGTCTAAGTTCTAGTTTTGGTCTCTCTAATAATGGTAGCTCAGCCTTGTTTAATACTTCTTCCACTGTTTCCAAGAGTGAGAAAAGCGGTTTTCCATCAATGCAAGAGGTTGCAGTTGAAACTGGTGAAGAAAATGAACGTGTGGTTTTCAATGCTGATTCTATATTATTCGAGTTTCTCGACGGATCGTGGAAGGAACGTGGAAAAGGAGAGCTGAAAGTTAATGTCCCGACAATTGGTACTGGGCGAGCAAGGATTCTGATGAGGGCTAGAGGAAATTACAGGTTAATTTTGAATGCAAGTCTTTACCCTGACATGAAGCTCACAAACATGGACAAGAAGGGTATCACATTTGCCTGCATGAACAGCACTAGCGAAGGGAAGGATGGTCTTTCAACATTTGCTTTGAAGTTCAAGGACGCATCCATAGTGGAAGAGTTTCGTGCAGCAGTCACAGAGCATAAAGGCAAGGCTTCTTCTACAGTTCTGAAAACGCCAGAGAATTCTCCTTAA

Coding sequence (CDS)

ATGGGGGATGCTGAAAATGCAACATCTACAAAGAAGAGGGCTGCTGGAAGGGAACTATCACGCGATAACCCTGGGCTTGATGATGAAGATGATGTGTCTGAGCAAGCAACTGGAACATTTAAGCGGGCTAGTGATGAAGTGCTAGCCGGCAGAAGAATTGTCAAAGTACGTCGTGGTCAGACTGCCTCTACCCCATCTTCTAATCCCTTTGCAGGAATACGCTTGGTACCTCCAACCGATAATAGTGGAAGTGCTTCAGAAGGTAAAAGTACTGCGCAGGCAGTTGGTGAAAAAACAGGTTCAGATGAGGCAAATGGAAAGGATGTTTCCCATGAAGAGAAAAAGGATGGAGATCATAATGATGAGCCAGCAGAACATAAAATTGACACATCGGAGGCTGAATCTGGTACAAATGTGCAGAATGTTGATCAGAATAGCACTGATGTAAGTGAATCTGCCATACCTAAGGTAGATGATAACTTAGTTGCTGAAAGTAATAAAATTGAAAATGAAGTGCAAGCAGGAGAAGATAAGACTAAAAATGAGGAACTTATAGGAGGTGATAATGCTGAGAATGATGCTTGTGTTAGTGGCGGTAAGAATGAGAACGAGGATCCTGCACGAGGCAATGAGAATGAAAATGAAGAACCCTGTGAAGGAAATGAAATGCCAAACAAAGAAACTGGGGATCAAGAAAAGGTAGAACATGAAGAAAAGAAAGAAGAGGGAAGTGAAGCCGATACTAGTAAGGAGGCTTCTCCGTTGAGCTCATTCCAACAACTGTCAAGTAGCCAGAACGCCTTCACAGGTCTTGCAGGTACCGGATTTTCGACTACTACGTTCTCCTTCGGTAATGTACTCAAGGATGGGGCTGGTCTAAGTTCTAGTTTTGGTCTCTCTAATAATGGTAGCTCAGCCTTGTTTAATACTTCTTCCACTGTTTCCAAGAGTGAGAAAAGCGGTTTTCCATCAATGCAAGAGGTTGCAGTTGAAACTGGTGAAGAAAATGAACGTGTGGTTTTCAATGCTGATTCTATATTATTCGAGTTTCTCGACGGATCGTGGAAGGAACGTGGAAAAGGAGAGCTGAAAGTTAATGTCCCGACAATTGGTACTGGGCGAGCAAGGATTCTGATGAGGGCTAGAGGAAATTACAGGTTAATTTTGAATGCAAGTCTTTACCCTGACATGAAGCTCACAAACATGGACAAGAAGGGTATCACATTTGCCTGCATGAACAGCACTAGCGAAGGGAAGGATGGTCTTTCAACATTTGCTTTGAAGTTCAAGGACGCATCCATAGTGGAAGAGTTTCGTGCAGCAGTCACAGAGCATAAAGGCAAGGCTTCTTCTACAGTTCTGAAAACGCCAGAGAATTCTCCTTAA

Protein sequence

MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQTASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHNDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKTKNEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHEEKKEEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLSNNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP

Homology

[Close]

BLAST of CmoCh08G006450 vs. ExPASy Swiss-Prot
Match: Q9C829 (Nuclear pore complex protein NUP50A OS=Arabidopsis thaliana OX=3702 GN=NUP50A PE=1 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 5.6e-83
Identity = 221/478 (46.23%), Postives = 294/478 (61.51%), Query Frame = 0


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRG 60
           MGD+EN    +KKR A ++LSRDNPGLDD+DD +E  +GTFK+ASDEVLA RRIV+V+R 
Sbjct: 1   MGDSENVQQPSKKRGALKQLSRDNPGLDDDDDSAELESGTFKKASDEVLASRRIVRVKRK 60

Query: 61  QTASTP--SSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDG 120
           + ++ P  +SNPFAGI+LVP T  + +++   + A     K    EA  +D  +++  D 
Sbjct: 61  EPSAAPVAASNPFAGIQLVPTT--APASTPVGTNAPLAESKLAPAEAVVED--NQKASDI 120

Query: 121 DHNDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGED 180
           +  DE    K+D  +A      +  D++     +SA  +V    VA+    +  V     
Sbjct: 121 EEGDEVDSKKVDVKDAVGEETEKTKDKDDNHCGKSADVQVAATEVAQMVSCDTNV----- 180

Query: 181 KTKNEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHE 240
                            C                N   E  +  + P ++    ++ E +
Sbjct: 181 -----------------C----------------NNAVEGTDQTDFPLEKDSGGDQAEKK 240

Query: 241 EKKEEG-SEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGA---GL 300
           EK+  G  EAD + +    SSFQQ SS++NAFTGLA T  S ++FSFG V +DG+   G 
Sbjct: 241 EKEGNGIEEADKNGDNGAFSSFQQHSSNKNAFTGLASTEASGSSFSFGLVSQDGSTGTGS 300

Query: 301 SSSFGLSNNGSSALFNT--SSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFL 360
              FGL ++ SS++F    SS + KSE SGFP  QEV+ ETGEENE+V F+ADSI+FE+L
Sbjct: 301 LFGFGLPSSNSSSIFGATGSSIIKKSEGSGFPPKQEVSTETGEENEKVAFSADSIMFEYL 360

Query: 361 DGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFAC 420
           DG WKERGKGELKVNV +   G+AR++MRA+GNYRLILNASLYP+MKL NMDKKGITFAC
Sbjct: 361 DGGWKERGKGELKVNVSS-NDGKARLVMRAKGNYRLILNASLYPEMKLANMDKKGITFAC 420

Query: 421 MNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHK--------GKASSTVLKTPENSP 462
           +NS SEGK+GLSTFALKFKD +IVEEFR A+ +HK         + S+  LKTPENSP
Sbjct: 421 VNSVSEGKEGLSTFALKFKDPTIVEEFRVAIDKHKDSKPMEKAAEKSALPLKTPENSP 435

[Close]

BLAST of CmoCh08G006450 vs. ExPASy Swiss-Prot
Match: Q9LW88 (Nuclear pore complex protein NUP50B OS=Arabidopsis thaliana OX=3702 GN=NUP50B PE=1 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.4e-81
Identity = 223/483 (46.17%), Postives = 291/483 (60.25%), Query Frame = 0


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDED-DVSEQATGTFKRASDEVLAGRRIVKVRR 60
           MGD++NA   ++KR A +ELSRDNPGLDD+D D S   +GTF  AS EVLA RRI++VRR
Sbjct: 1   MGDSDNAIPFSRKRTALKELSRDNPGLDDDDEDTSALESGTFNTASKEVLASRRIIRVRR 60

Query: 61  GQTAST--PSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKD 120
              ++T  P+SNPF GIRLVP T  + S +  ++T      K             E   D
Sbjct: 61  TDRSATAPPASNPFTGIRLVPFTAPAPSTAAAETTKPLSAGK------------QETLAD 120

Query: 121 GDHNDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGE 180
           G  +D   E   D+ E     +     +   D   +    + D    E ++  N V+ G 
Sbjct: 121 G-RSDATKETDGDSKEKSDAIDAVGKQETQGDEISAKTKDIIDGGEKEMSEAVNSVEGGG 180

Query: 181 DKTKNEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEH 240
              KNE+ I          V+ G+   +D     +N N    EG++   K+TG  +  E 
Sbjct: 181 AVNKNEDEIKTTMVTE---VAAGEETVKD-----DNNNSNTVEGSDCVVKDTGGNQ-TEK 240

Query: 241 EEKKEEGSEADTSK--EASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGA--- 300
           E K+ +G+E DT K  ++  LSSF Q SSS+NAFTGLA TGFS ++FSFG V ++G+   
Sbjct: 241 EGKEGDGNE-DTEKNGDSGALSSFHQHSSSKNAFTGLASTGFSASSFSFGLVPQEGSTGS 300

Query: 301 ---GLSSSFGLSNNGSSALFNTSSTVSKSEKS-----GFPSMQEVAVETGEENERVVFNA 360
                S SFG +NNG+S+LF  S   S + KS      FPS Q+V+VETGEENE+  F A
Sbjct: 301 GSEQSSFSFGQANNGNSSLFGASVATSITTKSTETTTAFPSKQDVSVETGEENEKAAFTA 360

Query: 361 DSILFEFLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMD 420
           DS++FE+L+G WKERGKGELKVN+ T    +AR++MR++GNYRL LNASLYP+MKL  MD
Sbjct: 361 DSVMFEYLEGGWKERGKGELKVNISTTENRKARLVMRSKGNYRLTLNASLYPEMKLAKMD 420

Query: 421 KKGITFACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTV-----LKTPE 462
           KKGITFAC+NS S+ KDGLST ALKFKD ++VEEFRA + EHK    S       LKTPE
Sbjct: 421 KKGITFACVNSVSDAKDGLSTLALKFKDPTVVEEFRAVIEEHKDSKPSVAEAAAPLKTPE 460

[Close]

BLAST of CmoCh08G006450 vs. ExPASy Swiss-Prot
Match: A0A0B4K7J2 (E3 SUMO-protein ligase RanBP2 OS=Drosophila melanogaster OX=7227 GN=Nup358 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.8e-12
Identity = 45/133 (33.83%), Postives = 72/133 (54.14%), Query Frame = 0


Query: 323  PSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGKGELKVNVPTIGTGRARILMRAR 382
            P   EV V TGEE E + F + + LF ++D  WKERG G +K+ +    TG +R+LMR  
Sbjct: 1315 PLPDEVEVRTGEEGEDIKFTSRAKLFRYVDKEWKERGTGVIKI-LCDKATGVSRVLMRRD 1374

Query: 383  GNYRLILNASLYPDMKLT----NMDKKGITFACMNSTSEGKDGLSTFALKFKDASIVEEF 442
              +++  N ++  D+ +     + DKK + +A  N  ++ +  L  F ++FK   + EEF
Sbjct: 1375 QTHKVCANHTITADITINVANQDKDKKSLLWAA-NDFADEQVTLERFLVRFKTGELAEEF 1434

Query: 443  RAAVTEHKGKASS 452
            R A T+    A S
Sbjct: 1435 RVAFTKASEAAKS 1445

[Close]

BLAST of CmoCh08G006450 vs. ExPASy Swiss-Prot
Match: Q86VV4 (Ran-binding protein 3-like OS=Homo sapiens OX=9606 GN=RANBP3L PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 5.0e-07
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 0


Query: 304 SSALFNTSSTVSKSEKSGFPS----MQEVAVETGEENERVVFNADSILFEF--LDGSWKE 363
           + ++ NTS   S +  S  PS    ++++ V TGEE E  V   +  LF F     SW E
Sbjct: 259 TDSIKNTSLIESAAAFSSQPSRKCLLEKIDVITGEETEHNVLKINCKLFIFNKTTQSWIE 318

Query: 364 RGKGELKVN---VPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGI 408
           RG+G L++N       GT ++R++MR +G+ RLILN+ L+  MK+   + K +
Sbjct: 319 RGRGTLRLNDTASTDCGTLQSRLIMRNQGSLRLILNSKLWAQMKIQRANHKNV 371

[Close]

BLAST of CmoCh08G006450 vs. ExPASy Swiss-Prot
Match: Q6PDH4 (Ran-binding protein 3-like OS=Mus musculus OX=10090 GN=Ranbp3l PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-06
Identity = 54/187 (28.88%), Postives = 94/187 (50.27%), Query Frame = 0


Query: 282 SFGNVLKDGAGLSSSFGLSNNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVF 341
           +F +VLK    +S+S  + N    +L  +++  S S+ S    ++++ V TGEE E  V 
Sbjct: 270 TFKSVLKFPNAVSNSDSIEN---ISLVESAAAFS-SKPSQKCLLEKIDVITGEETEHNVL 329

Query: 342 NADSILFEF--LDGSWKERGKGELKVNVPT---IGTGRARILMRARGNYRLILNASLYPD 401
             +  +F F     SW ERG+G L++N       GT ++R++MR +G+ RL+LN+ L+  
Sbjct: 330 KINCKIFVFNKATESWSERGQGILRLNDTAGRECGTLQSRLIMRNQGSLRLVLNSRLWAQ 389

Query: 402 MKLTNMDKKGITFACMNSTSEGKDGLSTFALK--FKDASIVEEFRAAVTEHKGKASSTVL 461
           MK+    +K +    + +T    DG+  F ++   KD      F  A   H+  A  ++ 
Sbjct: 390 MKIQRASQKNLR---ITATDLEDDGIKIFLIQASAKDTG----FLYAAIHHRLVALRSLA 445

[Close]

BLAST of CmoCh08G006450 vs. ExPASy TrEMBL
Match: A0A6J1HNF6 (nuclear pore complex protein NUP50A-like OS=Cucurbita moschata OX=3662 GN=LOC111464517 PE=4 SV=1)

HSP 1 Score: 850.1 bits (2195), Expect = 4.2e-243
Identity = 461/461 (100.00%), Postives = 461/461 (100.00%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60

Query: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN 120
           TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN
Sbjct: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN 120

Query: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180
           DEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKTK
Sbjct: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180

Query: 181 NEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHEEKK 240
           NEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHEEKK
Sbjct: 181 NEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHEEKK 240

Query: 241 EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS 300
           EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS
Sbjct: 241 EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS 300

Query: 301 NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK 360
           NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK
Sbjct: 301 NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK 360

Query: 361 GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD 420
           GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD
Sbjct: 361 GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD 420

Query: 421 GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
           GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP
Sbjct: 421 GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 461

[Close]

BLAST of CmoCh08G006450 vs. ExPASy TrEMBL
Match: A0A6J1KFN4 (nuclear pore complex protein NUP50A-like OS=Cucurbita maxima OX=3661 GN=LOC111494613 PE=4 SV=1)

HSP 1 Score: 827.8 bits (2137), Expect = 2.3e-236
Identity = 451/461 (97.83%), Postives = 456/461 (98.92%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60

Query: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN 120
           TASTPSSNPFAGIRLVPPTDNSGSASEGKS AQAVGEKTGSDEANGKDVSHEEKKDGDHN
Sbjct: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSNAQAVGEKTGSDEANGKDVSHEEKKDGDHN 120

Query: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180
           DEPAEHKIDTSEAESGTNVQNVDQNST VSESAIPKVDDNLVAESNKIENEVQAGEDKTK
Sbjct: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTIVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180

Query: 181 NEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHEEKK 240
           NEELIGG+NAENDACVSGGKNENEDPA+GNENENEEPCEGNE+ NKETGDQEKVE+EEKK
Sbjct: 181 NEELIGGENAENDACVSGGKNENEDPAQGNENENEEPCEGNEIQNKETGDQEKVENEEKK 240

Query: 241 EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS 300
           E GSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGN+LKDGAGLSSSFGLS
Sbjct: 241 EVGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNILKDGAGLSSSFGLS 300

Query: 301 NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK 360
           NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK
Sbjct: 301 NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK 360

Query: 361 GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD 420
           GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSE KD
Sbjct: 361 GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEVKD 420

Query: 421 GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
           GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP
Sbjct: 421 GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 461

[Close]

BLAST of CmoCh08G006450 vs. ExPASy TrEMBL
Match: A0A6J1GQJ1 (nuclear pore complex protein NUP50B-like OS=Cucurbita moschata OX=3662 GN=LOC111456179 PE=4 SV=1)

HSP 1 Score: 673.7 bits (1737), Expect = 5.5e-190
Identity = 381/474 (80.38%), Postives = 410/474 (86.50%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDE+DVSEQ  GTFKRAS+EVLA RRIVKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60

Query: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN 120
           TAS PSSNPFAGIRLVPPT+NSGSASE KS AQA GEKTGSDEA  KDVSHE+ +   H+
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSASEVKSDAQAAGEKTGSDEAKQKDVSHEKIQKDGHS 120

Query: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180
           DEPAE K+DTSEAES  NVQNVDQNST  SESAI ++DD  V E NKIENE+ AGEDK  
Sbjct: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEIPAGEDKNG 180

Query: 181 NEELIGGDNAENDACVSGG-----------KNENEDPARGNENENEEPCEGNEMPNKETG 240
           NEEL+  + AEND CVSGG           KNENEDPAR  +NENEEP EGNE+ NKETG
Sbjct: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG 240

Query: 241 DQEKVEHEEKKEEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKD 300
           DQEK E+EE KE GSE D SK+A PLSSFQQLSSSQNAFTGLAGTG +T+TFSFGN+ KD
Sbjct: 241 DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD 300

Query: 301 GAGLSSSFGLSNNGSSALFNT--SSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSIL 360
           G GL++SFGLS NGSSALF T  SS VSKSEKSGFPSMQEVAVETGEENE+VVF+ADSI+
Sbjct: 301 GVGLTASFGLSTNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFSADSIM 360

Query: 361 FEFLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGI 420
           FEF+DGSWKERGKGELKVNVPT GTGRARILMRARGNYRLILNASLYPDMKLTNMDK+GI
Sbjct: 361 FEFIDGSWKERGKGELKVNVPTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI 420

Query: 421 TFACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
           TFACMNS SEGKDGLST+ LKF+D SIVEEFRAA+TEHKGKA STVLKTPENSP
Sbjct: 421 TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKA-STVLKTPENSP 473

[Close]

BLAST of CmoCh08G006450 vs. ExPASy TrEMBL
Match: A0A6J1JV59 (nuclear pore complex protein NUP50B-like OS=Cucurbita maxima OX=3661 GN=LOC111488624 PE=4 SV=1)

HSP 1 Score: 667.9 bits (1722), Expect = 3.0e-188
Identity = 381/477 (79.87%), Postives = 410/477 (85.95%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDE+DVSEQ  GTFKRAS+EVLA RRIVKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60

Query: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN 120
           TAS PSSNPFAGIRLVPPT+N+GSASE KS AQA GEKTGS+EA  KDVSHE+ +   H+
Sbjct: 61  TASAPSSNPFAGIRLVPPTENNGSASEVKSDAQAAGEKTGSNEAKQKDVSHEKFQKDGHS 120

Query: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180
           DEPAE K+DTSEAES  NVQNVDQNST  SESAI ++DD  V E NKIENEV AGEDK  
Sbjct: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG 180

Query: 181 NEELIGGDNAENDACVSGG-----------KNENEDPARGNENENEEPCEGNEMPNKETG 240
           NEEL+  + AEND CVSGG           KNENEDPAR  +NENEEP EGNE+ NKETG
Sbjct: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPIEGNEIQNKETG 240

Query: 241 DQEKVEHE---EKKEEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNV 300
           DQEK+E+E   E KE GSE D SK+A PLSSFQQLSSSQNAFTGLAGTG  T+TFSFGN+
Sbjct: 241 DQEKIENEENKENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLPTSTFSFGNI 300

Query: 301 LKDGAGLSSSFGLSNNGSSALFNT--SSTVSKSEKSGFPSMQEVAVETGEENERVVFNAD 360
            KDG GL++SFGLS NGSSALF T  SS VSKSEKSGFPSMQEVAVETGEENE+VVFNAD
Sbjct: 301 PKDGVGLTASFGLSTNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNAD 360

Query: 361 SILFEFLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDK 420
           SI+FEF+DGSWKERGKGELKVNVPT GTGRARILMRARGNYRLILNASLYPDMKLTNMDK
Sbjct: 361 SIMFEFIDGSWKERGKGELKVNVPTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDK 420

Query: 421 KGITFACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
           +GITFACMNS SEGKDGLST+ LKF+D SIVEEFRAA+TEHKGKA STVLKTPENSP
Sbjct: 421 RGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKA-STVLKTPENSP 476

[Close]

BLAST of CmoCh08G006450 vs. ExPASy TrEMBL
Match: A0A1S4E3Q0 (nuclear pore complex protein NUP50A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500566 PE=4 SV=1)

HSP 1 Score: 665.6 bits (1716), Expect = 1.5e-187
Identity = 375/466 (80.47%), Postives = 410/466 (87.98%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPG DD++DVSEQ TGTFKRAS+EVLA RRIVKVRRG 
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGPDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60

Query: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHE-EKKDGDH 120
           TAS PSSNPFAGIRLVPPT+NSGS +E +   +A  EK GSDEANGKD+ HE  +KDGDH
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSVAEVQHDTEAADEKAGSDEANGKDIPHEVTQKDGDH 120

Query: 121 NDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKT 180
           +DEP + KIDTSEA+S   VQ VDQNST +SESAI KVDDNLV ESNKIENE  AG DKT
Sbjct: 121 SDEPVKCKIDTSEAKSVPKVQPVDQNSTVLSESAISKVDDNLVFESNKIENEEPAGGDKT 180

Query: 181 KNEELI--GGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHE 240
            NEEL+      +END CVS  KNE+E PARG++NENEEP EGNE+ NKETG+QEK E+E
Sbjct: 181 GNEELVRDAEKESENDECVSCDKNEDEVPARGDKNENEEPSEGNEIQNKETGEQEKTENE 240

Query: 241 EKKEEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSF 300
           E KE+ SE + SKEA+PL+SFQQLSSSQNAFTGLAGTGFST+TFSFGN+ KDG GL++SF
Sbjct: 241 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300

Query: 301 GLSNNGSSALFNT--SSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSW 360
           GLSNNGSSALF T  SSTVSKSE+SGFPSMQEVAVETGEENE+VVFNADSILFEF+DGSW
Sbjct: 301 GLSNNGSSALFGTSGSSTVSKSERSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360

Query: 361 KERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNST 420
           KERGKGELKVNVPT GTGR RILMRARGNYRLILNASLYPDMKLTNMDK+GITFACMNST
Sbjct: 361 KERGKGELKVNVPTSGTGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420

Query: 421 SEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
            +GKDGLSTF +KFKD SIVEEFRAAVTEHKGKASSTVLKTPENSP
Sbjct: 421 IDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKGKASSTVLKTPENSP 466

[Close]

BLAST of CmoCh08G006450 vs. NCBI nr
Match: XP_022964514.1 (nuclear pore complex protein NUP50A-like [Cucurbita moschata])

HSP 1 Score: 850.1 bits (2195), Expect = 8.8e-243
Identity = 461/461 (100.00%), Postives = 461/461 (100.00%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60

Query: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN 120
           TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN
Sbjct: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN 120

Query: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180
           DEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKTK
Sbjct: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180

Query: 181 NEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHEEKK 240
           NEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHEEKK
Sbjct: 181 NEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHEEKK 240

Query: 241 EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS 300
           EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS
Sbjct: 241 EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS 300

Query: 301 NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK 360
           NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK
Sbjct: 301 NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK 360

Query: 361 GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD 420
           GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD
Sbjct: 361 GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD 420

Query: 421 GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
           GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP
Sbjct: 421 GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 461

[Close]

BLAST of CmoCh08G006450 vs. NCBI nr
Match: KAG7025782.1 (Nuclear pore complex protein NUP50A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 838.2 bits (2164), Expect = 3.5e-239
Identity = 454/461 (98.48%), Postives = 459/461 (99.57%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRR+VKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRMVKVRRGQ 60

Query: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN 120
           TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN
Sbjct: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN 120

Query: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180
           DEPAEHKIDTSEAESGTNVQNVDQNST VSESAIPKVDDNLVAESNKIENEVQAGEDKTK
Sbjct: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTVVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180

Query: 181 NEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHEEKK 240
           NEELIGGDNAENDACVSGGKNENEDPARGNENENE+PCEGNE+PNKETGDQEKVEHEEKK
Sbjct: 181 NEELIGGDNAENDACVSGGKNENEDPARGNENENEKPCEGNEIPNKETGDQEKVEHEEKK 240

Query: 241 EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS 300
           EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS
Sbjct: 241 EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS 300

Query: 301 NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK 360
           NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK
Sbjct: 301 NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK 360

Query: 361 GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD 420
           GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD
Sbjct: 361 GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD 420

Query: 421 GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
           GLSTFALKFKDASIVEEFRAAVTEHKGK+SS+ LKTPENSP
Sbjct: 421 GLSTFALKFKDASIVEEFRAAVTEHKGKSSSSALKTPENSP 461

[Close]

BLAST of CmoCh08G006450 vs. NCBI nr
Match: KAG6593442.1 (Nuclear pore complex protein NUP50A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 834.3 bits (2154), Expect = 5.0e-238
Identity = 453/461 (98.26%), Postives = 458/461 (99.35%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRR+VKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRMVKVRRGQ 60

Query: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN 120
           TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSH EKKDGDHN
Sbjct: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHVEKKDGDHN 120

Query: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180
           D PAEHKIDTSEAESGTNVQNVDQNST VSESAIPKVDDNLVAESNKIENEVQAGEDKTK
Sbjct: 121 DGPAEHKIDTSEAESGTNVQNVDQNSTVVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180

Query: 181 NEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHEEKK 240
           NEELIGGDNAENDACVSGGKNENEDPARGNENENE+PCEGNE+PNKETGDQEKVEHEEKK
Sbjct: 181 NEELIGGDNAENDACVSGGKNENEDPARGNENENEKPCEGNEIPNKETGDQEKVEHEEKK 240

Query: 241 EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS 300
           EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS
Sbjct: 241 EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS 300

Query: 301 NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK 360
           NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK
Sbjct: 301 NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK 360

Query: 361 GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD 420
           GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD
Sbjct: 361 GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD 420

Query: 421 GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
           GLSTFALKFKDASIVEEFRAAVTEHKGK+SS+VLKTPENSP
Sbjct: 421 GLSTFALKFKDASIVEEFRAAVTEHKGKSSSSVLKTPENSP 461

[Close]

BLAST of CmoCh08G006450 vs. NCBI nr
Match: XP_023514352.1 (nuclear pore complex protein NUP50A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 830.9 bits (2145), Expect = 5.5e-237
Identity = 452/461 (98.05%), Postives = 457/461 (99.13%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60

Query: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN 120
           TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVG+KTGSDEANGKDVSHEEKKDGDHN
Sbjct: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGDKTGSDEANGKDVSHEEKKDGDHN 120

Query: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180
           DEPAEHKIDTSEAESGTNVQNVDQNST VSESAIPKVDD  VAESNKIENEVQAGEDKTK
Sbjct: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTIVSESAIPKVDDYSVAESNKIENEVQAGEDKTK 180

Query: 181 NEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHEEKK 240
           NEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNE+ NKETGDQEKVE+EEKK
Sbjct: 181 NEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEIQNKETGDQEKVENEEKK 240

Query: 241 EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS 300
           E+GSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGN+LKDGAGLSSSFGLS
Sbjct: 241 EKGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNILKDGAGLSSSFGLS 300

Query: 301 NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK 360
           NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK
Sbjct: 301 NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK 360

Query: 361 GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD 420
           GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD
Sbjct: 361 GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD 420

Query: 421 GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
           GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP
Sbjct: 421 GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 461

[Close]

BLAST of CmoCh08G006450 vs. NCBI nr
Match: XP_023000356.1 (nuclear pore complex protein NUP50A-like [Cucurbita maxima])

HSP 1 Score: 827.8 bits (2137), Expect = 4.7e-236
Identity = 451/461 (97.83%), Postives = 456/461 (98.92%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRGQ 60

Query: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDGDHN 120
           TASTPSSNPFAGIRLVPPTDNSGSASEGKS AQAVGEKTGSDEANGKDVSHEEKKDGDHN
Sbjct: 61  TASTPSSNPFAGIRLVPPTDNSGSASEGKSNAQAVGEKTGSDEANGKDVSHEEKKDGDHN 120

Query: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180
           DEPAEHKIDTSEAESGTNVQNVDQNST VSESAIPKVDDNLVAESNKIENEVQAGEDKTK
Sbjct: 121 DEPAEHKIDTSEAESGTNVQNVDQNSTIVSESAIPKVDDNLVAESNKIENEVQAGEDKTK 180

Query: 181 NEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHEEKK 240
           NEELIGG+NAENDACVSGGKNENEDPA+GNENENEEPCEGNE+ NKETGDQEKVE+EEKK
Sbjct: 181 NEELIGGENAENDACVSGGKNENEDPAQGNENENEEPCEGNEIQNKETGDQEKVENEEKK 240

Query: 241 EEGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGAGLSSSFGLS 300
           E GSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGN+LKDGAGLSSSFGLS
Sbjct: 241 EVGSEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNILKDGAGLSSSFGLS 300

Query: 301 NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK 360
           NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK
Sbjct: 301 NNGSSALFNTSSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFLDGSWKERGK 360

Query: 361 GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEGKD 420
           GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSE KD
Sbjct: 361 GELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFACMNSTSEVKD 420

Query: 421 GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 462
           GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP
Sbjct: 421 GLSTFALKFKDASIVEEFRAAVTEHKGKASSTVLKTPENSP 461

[Close]

BLAST of CmoCh08G006450 vs. TAIR 10
Match: AT1G52380.1 (NUP50 (Nucleoporin 50 kDa) protein )

HSP 1 Score: 309.7 bits (792), Expect = 4.0e-84
Identity = 221/478 (46.23%), Postives = 294/478 (61.51%), Query Frame = 0


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDEDDVSEQATGTFKRASDEVLAGRRIVKVRRG 60
           MGD+EN    +KKR A ++LSRDNPGLDD+DD +E  +GTFK+ASDEVLA RRIV+V+R 
Sbjct: 1   MGDSENVQQPSKKRGALKQLSRDNPGLDDDDDSAELESGTFKKASDEVLASRRIVRVKRK 60

Query: 61  QTASTP--SSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKDG 120
           + ++ P  +SNPFAGI+LVP T  + +++   + A     K    EA  +D  +++  D 
Sbjct: 61  EPSAAPVAASNPFAGIQLVPTT--APASTPVGTNAPLAESKLAPAEAVVED--NQKASDI 120

Query: 121 DHNDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGED 180
           +  DE    K+D  +A      +  D++     +SA  +V    VA+    +  V     
Sbjct: 121 EEGDEVDSKKVDVKDAVGEETEKTKDKDDNHCGKSADVQVAATEVAQMVSCDTNV----- 180

Query: 181 KTKNEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEHE 240
                            C                N   E  +  + P ++    ++ E +
Sbjct: 181 -----------------C----------------NNAVEGTDQTDFPLEKDSGGDQAEKK 240

Query: 241 EKKEEG-SEADTSKEASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGA---GL 300
           EK+  G  EAD + +    SSFQQ SS++NAFTGLA T  S ++FSFG V +DG+   G 
Sbjct: 241 EKEGNGIEEADKNGDNGAFSSFQQHSSNKNAFTGLASTEASGSSFSFGLVSQDGSTGTGS 300

Query: 301 SSSFGLSNNGSSALFNT--SSTVSKSEKSGFPSMQEVAVETGEENERVVFNADSILFEFL 360
              FGL ++ SS++F    SS + KSE SGFP  QEV+ ETGEENE+V F+ADSI+FE+L
Sbjct: 301 LFGFGLPSSNSSSIFGATGSSIIKKSEGSGFPPKQEVSTETGEENEKVAFSADSIMFEYL 360

Query: 361 DGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMDKKGITFAC 420
           DG WKERGKGELKVNV +   G+AR++MRA+GNYRLILNASLYP+MKL NMDKKGITFAC
Sbjct: 361 DGGWKERGKGELKVNVSS-NDGKARLVMRAKGNYRLILNASLYPEMKLANMDKKGITFAC 420

Query: 421 MNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHK--------GKASSTVLKTPENSP 462
           +NS SEGK+GLSTFALKFKD +IVEEFR A+ +HK         + S+  LKTPENSP
Sbjct: 421 VNSVSEGKEGLSTFALKFKDPTIVEEFRVAIDKHKDSKPMEKAAEKSALPLKTPENSP 435

[Close]

BLAST of CmoCh08G006450 vs. TAIR 10
Match: AT3G15970.1 (NUP50 (Nucleoporin 50 kDa) protein )

HSP 1 Score: 305.1 bits (780), Expect = 9.8e-83
Identity = 223/483 (46.17%), Postives = 291/483 (60.25%), Query Frame = 0


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDED-DVSEQATGTFKRASDEVLAGRRIVKVRR 60
           MGD++NA   ++KR A +ELSRDNPGLDD+D D S   +GTF  AS EVLA RRI++VRR
Sbjct: 1   MGDSDNAIPFSRKRTALKELSRDNPGLDDDDEDTSALESGTFNTASKEVLASRRIIRVRR 60

Query: 61  GQTAST--PSSNPFAGIRLVPPTDNSGSASEGKSTAQAVGEKTGSDEANGKDVSHEEKKD 120
              ++T  P+SNPF GIRLVP T  + S +  ++T      K             E   D
Sbjct: 61  TDRSATAPPASNPFTGIRLVPFTAPAPSTAAAETTKPLSAGK------------QETLAD 120

Query: 121 GDHNDEPAEHKIDTSEAESGTNVQNVDQNSTDVSESAIPKVDDNLVAESNKIENEVQAGE 180
           G  +D   E   D+ E     +     +   D   +    + D    E ++  N V+ G 
Sbjct: 121 G-RSDATKETDGDSKEKSDAIDAVGKQETQGDEISAKTKDIIDGGEKEMSEAVNSVEGGG 180

Query: 181 DKTKNEELIGGDNAENDACVSGGKNENEDPARGNENENEEPCEGNEMPNKETGDQEKVEH 240
              KNE+ I          V+ G+   +D     +N N    EG++   K+TG  +  E 
Sbjct: 181 AVNKNEDEIKTTMVTE---VAAGEETVKD-----DNNNSNTVEGSDCVVKDTGGNQ-TEK 240

Query: 241 EEKKEEGSEADTSK--EASPLSSFQQLSSSQNAFTGLAGTGFSTTTFSFGNVLKDGA--- 300
           E K+ +G+E DT K  ++  LSSF Q SSS+NAFTGLA TGFS ++FSFG V ++G+   
Sbjct: 241 EGKEGDGNE-DTEKNGDSGALSSFHQHSSSKNAFTGLASTGFSASSFSFGLVPQEGSTGS 300

Query: 301 ---GLSSSFGLSNNGSSALFNTSSTVSKSEKS-----GFPSMQEVAVETGEENERVVFNA 360
                S SFG +NNG+S+LF  S   S + KS      FPS Q+V+VETGEENE+  F A
Sbjct: 301 GSEQSSFSFGQANNGNSSLFGASVATSITTKSTETTTAFPSKQDVSVETGEENEKAAFTA 360

Query: 361 DSILFEFLDGSWKERGKGELKVNVPTIGTGRARILMRARGNYRLILNASLYPDMKLTNMD 420
           DS++FE+L+G WKERGKGELKVN+ T    +AR++MR++GNYRL LNASLYP+MKL  MD
Sbjct: 361 DSVMFEYLEGGWKERGKGELKVNISTTENRKARLVMRSKGNYRLTLNASLYPEMKLAKMD 420

Query: 421 KKGITFACMNSTSEGKDGLSTFALKFKDASIVEEFRAAVTEHKGKASSTV-----LKTPE 462
           KKGITFAC+NS S+ KDGLST ALKFKD ++VEEFRA + EHK    S       LKTPE
Sbjct: 421 KKGITFACVNSVSDAKDGLSTLALKFKDPTVVEEFRAVIEEHKDSKPSVAEAAAPLKTPE 460

[Close]

BLAST of CmoCh08G006450 vs. TAIR 10
Match: AT2G30060.1 (Pleckstrin homology (PH) domain superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 2.2e-05
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = 0


Query: 325 MQEVAVETGEENERVVFNADSILFEF-LDGS-WKERGKGELKVNVPTIGTGRARILMRAR 384
           ++EVAV TGEE+E  + +  S L+ F  DGS WKERG G +K     + +G+ R++MR  
Sbjct: 36  LEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQWKERGAGTVKFLKHRV-SGKIRLVMRQS 95

Query: 385 GNYRLILNASLYPDMKL---TNMDKKGITFACMNSTSEGKDGLSTFALKFKDASIVEEFR 444
              ++  N  +   M +      DK  +  A   S  E KD L  F ++F   + VE  +
Sbjct: 96  KTLKICANHLVGSGMSVQEHAGNDKSCVWHARDFSDGELKDEL--FCIRF---ASVENCK 155

Query: 445 AAVTEHKGKASS 452
           A + + K  A S
Sbjct: 156 AFMQKFKEVAES 161

[Close]

BLAST of CmoCh08G006450 vs. TAIR 10
Match: AT5G58590.1 (RAN binding protein 1 )

HSP 1 Score: 47.4 bits (111), Expect = 3.7e-05
Identity = 38/125 (30.40%), Postives = 60/125 (48.00%), Query Frame = 0


Query: 325 MQEVAVETGEENERVVFNADSILFEF--LDGSWKERGKGELKVNVPTIGTGRARILMRAR 384
           ++EVAV TGEE+E  V +  S ++ F      WKERG G +K+ +    TG+ R++MR  
Sbjct: 33  LEEVAVTTGEEDEDAVLDLKSKMYRFDKEGNQWKERGAGTVKL-LKHKETGKVRLVMRQS 92

Query: 385 GNYRLILNASLYPDMKL---TNMDKKGITFACMNSTSEGKDGLSTFALKFKDASIVEEFR 444
              ++  N  +   M +   +  +K  +  A   S  E KD L  F ++F      + F 
Sbjct: 93  KTLKICANHLISSGMSVQEHSGNEKSCLWHATDFSDGELKDEL--FCIRFASIENCKTFM 152

[Close]

BLAST of CmoCh08G006450 vs. TAIR 10
Match: AT1G07140.1 (Pleckstrin homology (PH) domain superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 1.1e-04
Identity = 40/129 (31.01%), Postives = 59/129 (45.74%), Query Frame = 0


Query: 325 MQEVAVETGEENERVVFNADSILFEFLD--GSWKERGKGELKVNVPTIGTGRARILMRAR 384
           ++EVAV TGEE+E  V +  S L+ F      WKERG G +K  +    TG+ R++MR  
Sbjct: 34  LEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKERGAGTVKF-LKHKNTGKIRLVMRQS 93

Query: 385 GNYRLILNASLYPDMKL---TNMDKKGITFACMNSTSEGKDGL-----------STFALK 438
              ++  N  +   M +      +K  +  A   +  E KD L            TF  K
Sbjct: 94  KTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDELFCIRFASIENCKTFMQK 153

The following BLAST results are available for this feature:

BLAST of CmoCh08G006450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C829	5.6e-83	46.23	Nuclear pore complex protein NUP50A OS=Arabidopsis thaliana OX=3702 GN=NUP50A PE...	[more]
Q9LW88	1.4e-81	46.17	Nuclear pore complex protein NUP50B OS=Arabidopsis thaliana OX=3702 GN=NUP50B PE...	[more]
A0A0B4K7J2	8.8e-12	33.83	E3 SUMO-protein ligase RanBP2 OS=Drosophila melanogaster OX=7227 GN=Nup358 PE=1 ...	[more]
Q86VV4	5.0e-07	35.40	Ran-binding protein 3-like OS=Homo sapiens OX=9606 GN=RANBP3L PE=1 SV=2	[more]
Q6PDH4	5.5e-06	28.88	Ran-binding protein 3-like OS=Mus musculus OX=10090 GN=Ranbp3l PE=1 SV=1	[more]

BLAST of CmoCh08G006450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HNF6	4.2e-243	100.00	nuclear pore complex protein NUP50A-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KFN4	2.3e-236	97.83	nuclear pore complex protein NUP50A-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1GQJ1	5.5e-190	80.38	nuclear pore complex protein NUP50B-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JV59	3.0e-188	79.87	nuclear pore complex protein NUP50B-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A1S4E3Q0	1.5e-187	80.47	nuclear pore complex protein NUP50A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of CmoCh08G006450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964514.1	8.8e-243	100.00	nuclear pore complex protein NUP50A-like [Cucurbita moschata]	[more]
KAG7025782.1	3.5e-239	98.48	Nuclear pore complex protein NUP50A, partial [Cucurbita argyrosperma subsp. argy...	[more]
KAG6593442.1	5.0e-238	98.26	Nuclear pore complex protein NUP50A, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_023514352.1	5.5e-237	98.05	nuclear pore complex protein NUP50A-like [Cucurbita pepo subsp. pepo]	[more]
XP_023000356.1	4.7e-236	97.83	nuclear pore complex protein NUP50A-like [Cucurbita maxima]	[more]

BLAST of CmoCh08G006450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52380.1	4.0e-84	46.23	NUP50 (Nucleoporin 50 kDa) protein	[more]
AT3G15970.1	9.8e-83	46.17	NUP50 (Nucleoporin 50 kDa) protein	[more]
AT2G30060.1	2.2e-05	33.33	Pleckstrin homology (PH) domain superfamily protein	[more]
AT5G58590.1	3.7e-05	30.40	RAN binding protein 1	[more]
AT1G07140.1	1.1e-04	31.01	Pleckstrin homology (PH) domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000156	Ran binding domain	SMART	SM00160	ranbd_3	coord: 319..445 e-value: 7.1E-16 score: 68.8
IPR000156	Ran binding domain	PFAM	PF00638	Ran_BP1	coord: 330..446 e-value: 5.8E-17 score: 62.1
IPR000156	Ran binding domain	PROSITE	PS50196	RANBD1	coord: 322..451 score: 18.234798
IPR011993	PH-like domain superfamily	GENE3D	2.30.29.30		coord: 309..457 e-value: 4.9E-36 score: 125.6
IPR015007	Nuclear pore complex, NUP2/50/61	PFAM	PF08911	NUP50	coord: 12..73 e-value: 2.8E-14 score: 53.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..26
None	No IPR available	PANTHER	PTHR23138	RAN BINDING PROTEIN	coord: 1..461
None	No IPR available	PANTHER	PTHR23138:SF142	NUCLEAR PORE COMPLEX PROTEIN NUP50A-RELATED	coord: 1..461
None	No IPR available	CDD	cd13169	RanBD_NUP50_plant	coord: 332..449 e-value: 1.25414E-66 score: 207.302
None	No IPR available	SUPERFAMILY	50729	PH domain-like	coord: 322..449

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G006450.1	CmoCh08G006450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
biological_process	GO:0051028	mRNA transport
biological_process	GO:0015031	protein transport
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0005096	GTPase activator activity