CmoCh08G005880 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G005880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ethylene-responsive transcription factor ERF003-like
Location	Cmo_Chr08: 3585257 .. 3586002 (+)
RNA-Seq Expression	CmoCh08G005880
Synteny	CmoCh08G005880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCAAACTCCGACCTCTTCCACCGTTGCACTTCCTCTTCAACCTCCTCCTCCTCCTTCTCCGACCGCCATGGCCCGACCTCAACAACGGTATCGCGGTGTTCGTCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGTAATTCTCTTCTTTTATACACTAAAAATACAAACTTTTTGAGATTTTTAATACTCCCTTCTTCTTCCTTCTTCCTTCTACTTAAAAACTTTCTTTTTCAGAAAGACGAGAATATGGTTGGGGACGTTCGAGACGGCGGAGGATGCAGCCCGAGCCTACGACGAGGCAGCGAGGCTGATGTGCGGCCCCAAAGCTAGAACTAACTTCCAACTCAATCTCAACGATCAACCCTCCTTTTCTTCTTCCTCCAACCTTCTCTCACCGGCGCTCATAGCCAAACTACACAAATGCCATTTAGCCTCACTCCAAATCACCAAAAAACACATCCATAAGCAACACCCGGGGTTCGACCTGAACGGCGGTCCTCCACCGAGCATTTCCAGGACCACCACCGGCCAGTGGCCACCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGATCAACAACAACGACAACAACAACATTCATCATCAGCCATGCCTTCAACCTCTTGAAGATGATCACATTGAACAAATGATTCAAGAGTTGCTAGATCTCGGACCGTTCGAAATCATTACATAGCTCCAATTCCCCCCTAGATTTACT

mRNA sequence

AACCAAACTCCGACCTCTTCCACCGTTGCACTTCCTCTTCAACCTCCTCCTCCTCCTTCTCCGACCGCCATGGCCCGACCTCAACAACGGTATCGCGGTGTTCGTCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTAAAGACGAGAATATGGTTGGGGACGTTCGAGACGGCGGAGGATGCAGCCCGAGCCTACGACGAGGCAGCGAGGCTGATGTGCGGCCCCAAAGCTAGAACTAACTTCCAACTCAATCTCAACGATCAACCCTCCTTTTCTTCTTCCTCCAACCTTCTCTCACCGGCGCTCATAGCCAAACTACACAAATGCCATTTAGCCTCACTCCAAATCACCAAAAAACACATCCATAAGCAACACCCGGGGTTCGACCTGAACGGCGGTCCTCCACCGAGCATTTCCAGGACCACCACCGGCCAGTGGCCACCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGATCAACAACAACGACAACAACAACATTCATCATCAGCCATGCCTTCAACCTCTTGAAGATGATCACATTGAACAAATGATTCAAGAGTTGCTAGATCTCGGACCGTTCGAAATCATTACATAGCTCCAATTCCCCCCTAGATTTACT

Coding sequence (CDS)

ATGGCCCGACCTCAACAACGGTATCGCGGTGTTCGTCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTAAAGACGAGAATATGGTTGGGGACGTTCGAGACGGCGGAGGATGCAGCCCGAGCCTACGACGAGGCAGCGAGGCTGATGTGCGGCCCCAAAGCTAGAACTAACTTCCAACTCAATCTCAACGATCAACCCTCCTTTTCTTCTTCCTCCAACCTTCTCTCACCGGCGCTCATAGCCAAACTACACAAATGCCATTTAGCCTCACTCCAAATCACCAAAAAACACATCCATAAGCAACACCCGGGGTTCGACCTGAACGGCGGTCCTCCACCGAGCATTTCCAGGACCACCACCGGCCAGTGGCCACCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGATCAACAACAACGACAACAACAACATTCATCATCAGCCATGCCTTCAACCTCTTGAAGATGATCACATTGAACAAATGATTCAAGAGTTGCTAGATCTCGGACCGTTCGAAATCATTACATAG

Protein sequence

MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSISRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFEIIT

Homology

[Close]

BLAST of CmoCh08G005880 vs. ExPASy Swiss-Prot
Match: Q94AW5 (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-45
Identity = 107/181 (59.12%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGP+AR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNF  N N  P  +SSS LLS  L AKLHKC++ASLQ+TK+                 S 
Sbjct: 61  TNFPYNPNAIP--TSSSKLLSATLTAKLHKCYMASLQMTKQ------TQTQTQTQTARSQ 120

Query: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180
           S  + G    E           EI   D  N + Q   +PLE+DHIEQMI+ELL  G  E
Sbjct: 121 SADSDGVTANESHLNRGVTETTEIKWED-GNANMQQNFRPLEEDHIEQMIEELLHYGSIE 172

Query: 181 I 182
           +
Sbjct: 181 L 172

[Close]

BLAST of CmoCh08G005880 vs. ExPASy Swiss-Prot
Match: P16146 (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.4e-37
Identity = 78/100 (78.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRG RQRHWGSWVSEIRH +LKTRIW GTFE+AEDAARAYDEAARLMCG +AR
Sbjct: 1   MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITK 101
           TNF  N N   S SSSS LLS  LIAKLH+C++ASLQ+T+
Sbjct: 61  TNFPYNPN--ASQSSSSKLLSATLIAKLHRCYMASLQMTR 98

[Close]

BLAST of CmoCh08G005880 vs. ExPASy Swiss-Prot
Match: Q9XI33 (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.7e-25
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQL 65
           +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNF L
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  NLND---------------QPSFSSSSNLLSPALIAKLHKC 92
           N N+                 S S+SS+ LS  L AKL KC
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKC 105

[Close]

BLAST of CmoCh08G005880 vs. ExPASy Swiss-Prot
Match: Q3E958 (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.4e-21
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQ- 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNF  
Sbjct: 5  KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66 LNLNDQPSFSSSSNLLSPALIAKL 89
          +  N   S   +S L SP  +++L
Sbjct: 65 IKSNGSNSLEINSALRSPKSLSEL 88

[Close]

BLAST of CmoCh08G005880 vs. ExPASy Swiss-Prot
Match: Q9LFN7 (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.2e-21
Identity = 51/86 (59.30%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQL 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNF +
Sbjct: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66 NLNDQPS---FSSSSNLLSPALIAKL 89
            +++ S      +S L+SP  +++L
Sbjct: 65 VKSEEGSDHVKDVNSPLMSPKSLSEL 90

[Close]

BLAST of CmoCh08G005880 vs. ExPASy TrEMBL
Match: A0A6J1H793 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=3662 GN=LOC111460738 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.0e-103
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI
Sbjct: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120

Query: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180
           SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE
Sbjct: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180

Query: 181 IIT 184
           IIT
Sbjct: 181 IIT 183

[Close]

BLAST of CmoCh08G005880 vs. ExPASy TrEMBL
Match: A0A6J1KW57 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661 GN=LOC111497726 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.3e-97
Identity = 175/183 (95.63%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQ+YRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQQYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQI KKHIHKQHPGFD NGGPPPSI
Sbjct: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQIAKKHIHKQHPGFDPNGGPPPSI 120

Query: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180
           SRTTTGQWPPEETWVYSDEAQM+I    NNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE
Sbjct: 121 SRTTTGQWPPEETWVYSDEAQMKI----NNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 179

Query: 181 IIT 184
           IIT
Sbjct: 181 IIT 179

[Close]

BLAST of CmoCh08G005880 vs. ExPASy TrEMBL
Match: A0A1S3CE50 (ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=LOC103499832 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.1e-77
Identity = 153/202 (75.74%), Postives = 164/202 (81.19%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQP-----SFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFD---- 120
           TNF  NLNDQ      S SSSS LLS ALI KLHKCHLASLQI K+H+HKQHPGF+    
Sbjct: 61  TNFPYNLNDQQSSSSFSSSSSSKLLSAALIEKLHKCHLASLQIAKQHVHKQHPGFEPSYL 120

Query: 121 -LNGGPPPSISRTTTGQWPPEETWVYSDEAQMEI--------NNNDNNNIHHQPC-LQPL 180
              G PPPSI+  TT +W  +ETWVYSD+ Q+E+        NNN+NNNIHHQ C L+PL
Sbjct: 121 AYGGSPPPSITGATTSRWTSDETWVYSDKGQLEMNNNNNNNNNNNNNNNIHHQQCQLEPL 180

Query: 181 EDDHIEQMIQELLDLGPFEIIT 184
           EDDHIEQMIQELLDLG FEIIT
Sbjct: 181 EDDHIEQMIQELLDLGSFEIIT 202

[Close]

BLAST of CmoCh08G005880 vs. ExPASy TrEMBL
Match: A0A0A0KA12 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432080 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 6.1e-76
Identity = 152/196 (77.55%), Postives = 163/196 (83.16%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQ---PSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFD-----L 120
           TNF  N NDQ    SFSSSS LLS ALI KLHKCHLASLQI K+H+HKQH GF+      
Sbjct: 61  TNFPYNPNDQQSSSSFSSSSKLLSAALIEKLHKCHLASLQIAKQHVHKQHAGFEPSYLAY 120

Query: 121 NGGPPPSISRTTTGQWPPEETWVYSDEA-QMEINNND---NNNIHHQPC-LQPLEDDHIE 180
           +G PPP I+  TT QW  +ETWVYS++  QME+NNN+   NNNIHHQ C L+PLEDDHIE
Sbjct: 121 SGSPPPIITGATTSQWASDETWVYSNKGDQMEMNNNNNNYNNNIHHQQCQLEPLEDDHIE 180

Query: 181 QMIQELLDLGPFEIIT 184
           QMIQELLDLG FEIIT
Sbjct: 181 QMIQELLDLGSFEIIT 196

[Close]

BLAST of CmoCh08G005880 vs. ExPASy TrEMBL
Match: A0A6J1GPQ0 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=3662 GN=LOC111456403 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.8e-73
Identity = 152/191 (79.58%), Postives = 158/191 (82.72%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQPSFSSSSN---LLSPALIAKLHKCHLASLQITKKH-IHKQHPGFDLN--- 120
           TNFQ N NDQ S SSSS+   LLS  L+AKLHKCHLASLQI KKH  HKQHPGF+ N   
Sbjct: 61  TNFQFNPNDQQSSSSSSSSSKLLSAPLMAKLHKCHLASLQIAKKHAAHKQHPGFEPNYAV 120

Query: 121 -GGPPPSISRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQE 180
            GGP PSIS+TTT +W  EET       Q+E  NNDNNNIHHQ CLQPLEDD IEQMIQE
Sbjct: 121 YGGPSPSISQTTTHRWRQEET-------QIE-TNNDNNNIHHQQCLQPLEDDDIEQMIQE 180

Query: 181 LLDLGPFEIIT 184
           LLDLG FEIIT
Sbjct: 181 LLDLGSFEIIT 183

[Close]

BLAST of CmoCh08G005880 vs. NCBI nr
Match: XP_022959765.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita moschata])

HSP 1 Score: 384.8 bits (987), Expect = 4.1e-103
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI
Sbjct: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120

Query: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180
           SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE
Sbjct: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180

Query: 181 IIT 184
           IIT
Sbjct: 181 IIT 183

[Close]

BLAST of CmoCh08G005880 vs. NCBI nr
Match: KAG6593370.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025719.1 Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 375.9 bits (964), Expect = 1.9e-100
Identity = 180/183 (98.36%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQI KKHIHKQ PGFDLNGGPPPSI
Sbjct: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQIAKKHIHKQQPGFDLNGGPPPSI 120

Query: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180
           SRTTTGQWPPEETWVYSDEAQMEINNNDNNNI HQPCLQPLEDDHIEQMIQELLDLGPFE
Sbjct: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIPHQPCLQPLEDDHIEQMIQELLDLGPFE 180

Query: 181 IIT 184
           IIT
Sbjct: 181 IIT 183

[Close]

BLAST of CmoCh08G005880 vs. NCBI nr
Match: XP_023513557.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365.2 bits (936), Expect = 3.4e-97
Identity = 177/183 (96.72%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQI KKHIHKQHPGFD NGGPPPSI
Sbjct: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQIAKKHIHKQHPGFDPNGGPPPSI 120

Query: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180
           SRTTTG WPPEETWVYSDEAQMEINNND NNIH Q CLQPLEDDHIEQMIQELLDLGPFE
Sbjct: 121 SRTTTGPWPPEETWVYSDEAQMEINNND-NNIHRQQCLQPLEDDHIEQMIQELLDLGPFE 180

Query: 181 IIT 184
           IIT
Sbjct: 181 IIT 182

[Close]

BLAST of CmoCh08G005880 vs. NCBI nr
Match: XP_023004394.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita maxima])

HSP 1 Score: 363.2 bits (931), Expect = 1.3e-96
Identity = 175/183 (95.63%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQ+YRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR
Sbjct: 1   MARPQQQYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQI KKHIHKQHPGFD NGGPPPSI
Sbjct: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQIAKKHIHKQHPGFDPNGGPPPSI 120

Query: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180
           SRTTTGQWPPEETWVYSDEAQM+I    NNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE
Sbjct: 121 SRTTTGQWPPEETWVYSDEAQMKI----NNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 179

Query: 181 IIT 184
           IIT
Sbjct: 181 IIT 179

[Close]

BLAST of CmoCh08G005880 vs. NCBI nr
Match: XP_038899890.1 (ethylene-responsive transcription factor ERF003-like [Benincasa hispida])

HSP 1 Score: 311.6 bits (797), Expect = 4.5e-81
Identity = 160/186 (86.02%), Postives = 164/186 (88.17%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGP AR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPNAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHP-GFDLNGGPPPS 120
           TNFQ N NDQ S SSSSNLLS ALIAKLHKCHLASLQI KKHIHKQHP GF     PPPS
Sbjct: 61  TNFQYNPNDQHSSSSSSNLLSAALIAKLHKCHLASLQIAKKHIHKQHPAGFQ---PPPPS 120

Query: 121 ISRTTTG-QWPPEETWVYSDEAQMEIN-NNDNNNIHHQPCLQPLEDDHIEQMIQELLDLG 180
           I+  TTG +W PEETWVYSDE QME+N NN+NNNIHHQ CLQPLEDDHIEQMIQELL LG
Sbjct: 121 IAGPTTGRRWTPEETWVYSDEGQMEMNDNNNNNNIHHQQCLQPLEDDHIEQMIQELLHLG 180

Query: 181 PFEIIT 184
            FEIIT
Sbjct: 181 SFEIIT 183

[Close]

BLAST of CmoCh08G005880 vs. TAIR 10
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-46
Identity = 107/181 (59.12%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGP+AR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSI 120
           TNF  N N  P  +SSS LLS  L AKLHKC++ASLQ+TK+                 S 
Sbjct: 61  TNFPYNPNAIP--TSSSKLLSATLTAKLHKCYMASLQMTKQ------TQTQTQTQTARSQ 120

Query: 121 SRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFE 180
           S  + G    E           EI   D  N + Q   +PLE+DHIEQMI+ELL  G  E
Sbjct: 121 SADSDGVTANESHLNRGVTETTEIKWED-GNANMQQNFRPLEEDHIEQMIEELLHYGSIE 172

Query: 181 I 182
           +
Sbjct: 181 L 172

[Close]

BLAST of CmoCh08G005880 vs. TAIR 10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-26
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQL 65
           +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNF L
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  NLND---------------QPSFSSSSNLLSPALIAKLHKC 92
           N N+                 S S+SS+ LS  L AKL KC
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKC 105

[Close]

BLAST of CmoCh08G005880 vs. TAIR 10
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-22
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQ- 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNF  
Sbjct: 5  KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66 LNLNDQPSFSSSSNLLSPALIAKL 89
          +  N   S   +S L SP  +++L
Sbjct: 65 IKSNGSNSLEINSALRSPKSLSEL 88

[Close]

BLAST of CmoCh08G005880 vs. TAIR 10
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 6.5e-22
Identity = 51/86 (59.30%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQL 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNF +
Sbjct: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66 NLNDQPS---FSSSSNLLSPALIAKL 89
            +++ S      +S L+SP  +++L
Sbjct: 65 VKSEEGSDHVKDVNSPLMSPKSLSEL 90

[Close]

BLAST of CmoCh08G005880 vs. TAIR 10
Match: AT5G25390.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-19
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQ- 65
          +++RGVRQR WGSWVSEIRHPLL   +WLGTF+TAE AARAYD+AA LM G  A+TNF  
Sbjct: 5  KKFRGVRQRQWGSWVSEIRHPLL---VWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66 LNLNDQPSFSSSSNLLSPALIAKL 89
          +  N   S   +S L SP  +++L
Sbjct: 65 IKSNGSNSLEINSALRSPKSLSEL 85

The following BLAST results are available for this feature:

BLAST of CmoCh08G005880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AW5	2.4e-45	59.12	Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 ...	[more]
P16146	2.4e-37	78.00	Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1	[more]
Q9XI33	4.7e-25	61.39	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q3E958	5.4e-21	60.71	Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702...	[more]
Q9LFN7	9.2e-21	59.30	Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of CmoCh08G005880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H793	2.0e-103	100.00	ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1KW57	6.3e-97	95.63	ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661...	[more]
A0A1S3CE50	1.1e-77	75.74	ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A0A0KA12	6.1e-76	77.55	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432080 PE=...	[more]
A0A6J1GPQ0	4.8e-73	79.58	ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=36...	[more]

BLAST of CmoCh08G005880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959765.1	4.1e-103	100.00	ethylene-responsive transcription factor ERF003-like [Cucurbita moschata]	[more]
KAG6593370.1	1.9e-100	98.36	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_023513557.1	3.4e-97	96.72	ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo...	[more]
XP_023004394.1	1.3e-96	95.63	ethylene-responsive transcription factor ERF003-like [Cucurbita maxima]	[more]
XP_038899890.1	4.5e-81	86.02	ethylene-responsive transcription factor ERF003-like [Benincasa hispida]	[more]

BLAST of CmoCh08G005880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25190.1	1.7e-46	59.12	Integrase-type DNA-binding superfamily protein	[more]
AT1G15360.1	3.3e-26	61.39	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.2	3.8e-22	60.71	Integrase-type DNA-binding superfamily protein	[more]
AT5G11190.1	6.5e-22	59.30	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.1	1.8e-19	58.33	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 8..19 score: 66.97 coord: 30..46 score: 70.91
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 7..70 e-value: 3.0E-41 score: 153.0
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 7..56 e-value: 7.3E-12 score: 45.3
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 7..64 score: 20.73171
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 6..64 e-value: 2.10478E-35 score: 116.602
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 6..66 e-value: 3.4E-26 score: 93.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..130
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 1..182
None	No IPR available	PANTHER	PTHR31194:SF48	ETHYLENE RESPONSE FACTOR	coord: 1..182
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 7..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G005880.1	CmoCh08G005880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity