CmoCh08G005570 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G005570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr08: 3419518 .. 3420341 (-)
RNA-Seq Expression	CmoCh08G005570
Synteny	CmoCh08G005570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTGAGAGCATTTCTCATAAACACTATTATGATATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATTCAGGATGAGCTTCAAAATCTCACACCGAATAACGAAGATCTTAATGTTGATAATAGAGATCGATTTGGGAGTCCTACAACAAAAGGGTTCGAGAACAACGAACATAAAAGCTTGAAGCAACTCATGAATGAAGAAGAGAAAGCAGAGACGAGGTTGGGGGAAGACGAGGGCGGCCGAGGAAGGAACTCACTTGGCCAACACTTTAGTAAAGAAGAGATGAACAAAAATCTTCAAATTGTGAAGAAACAACATCGAGATGGACTACAAGGAGTGAAGCTGAAAAAAGTGGTAGGAAATTTTTTGAGAAGTTTGATAAAAGGTGGCGATAAACACCAGCTGAAGAAGCCAACAAAAAATCATTTCTATAATTCACAATGAAGAGAAAAATGTTCATTACAACTTTATCAACAACATCGAGATGAACTACAAGATATGTTTTAACCCATTCTACCCATTCTACAAGATAAAATAATAATTATTATAAATATATATATATATATATATAGATTTTACTCATCATCATCTAGAGAACATATTTGAATAGATCCATCAAAATTCAACATATTTTCCCATAATGTCATCAAAATCGATGTTGGCAACACATGAAAGACTAGACAAATGTGCTTATAGTTATAACGTTGAAAATAGAACAAGGGATGAAAGATAAAACATACAGTTTCTGTTGGTTACTAGATAGTGTTCAACGCTACAAATCAACCCAGATTGGCCTTATGAATAGTTCATGA

mRNA sequence

ATGGAGAGTGAGAGCATTTCTCATAAACACTATTATGATATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATTCAGGATGAGCTTCAAAATCTCACACCGAATAACGAAGATCTTAATGTTGATAATAGAGATCGATTTGGGAGTCCTACAACAAAAGGGTTCGAGAACAACGAACATAAAAGCTTGAAGCAACTCATGAATGAAGAAGAGAAAGCAGAGACGAGGTTGGGGGAAGACGAGGGCGGCCGAGGAAGGAACTCACTTGGCCAACACTTTAGTAAAGAAGAGATGAACAAAAATCTTCAAATTGTGAAGAAACAACATCGAGATGGACTACAAGGAGTGAAGCTGAAAAAAGTGGTAGGAAATTTTTTGAGAAGTTTGATAAAAGAACAAGGGATGAAAGATAAAACATACAGTTTCTGTTGGTTACTAGATAGTGTTCAACGCTACAAATCAACCCAGATTGGCCTTATGAATAGTTCATGA

Coding sequence (CDS)

ATGGAGAGTGAGAGCATTTCTCATAAACACTATTATGATATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATTCAGGATGAGCTTCAAAATCTCACACCGAATAACGAAGATCTTAATGTTGATAATAGAGATCGATTTGGGAGTCCTACAACAAAAGGGTTCGAGAACAACGAACATAAAAGCTTGAAGCAACTCATGAATGAAGAAGAGAAAGCAGAGACGAGGTTGGGGGAAGACGAGGGCGGCCGAGGAAGGAACTCACTTGGCCAACACTTTAGTAAAGAAGAGATGAACAAAAATCTTCAAATTGTGAAGAAACAACATCGAGATGGACTACAAGGAGTGAAGCTGAAAAAAGTGGTAGGAAATTTTTTGAGAAGTTTGATAAAAGAACAAGGGATGAAAGATAAAACATACAGTTTCTGTTGGTTACTAGATAGTGTTCAACGCTACAAATCAACCCAGATTGGCCTTATGAATAGTTCATGA

Protein sequence

MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNEHKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLKKVVGNFLRSLIKEQGMKDKTYSFCWLLDSVQRYKSTQIGLMNSS

Homology

[Close]

BLAST of CmoCh08G005570 vs. ExPASy TrEMBL
Match: A0A6J1H8U7 (uncharacterized protein LOC111460691 OS=Cucurbita moschata OX=3662 GN=LOC111460691 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 7.4e-65
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE 60
           MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE
Sbjct: 11  MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE 70

Query: 61  HKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK 120
           HKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK
Sbjct: 71  HKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK 130

Query: 121 KVVGNFLRSLIK 133
           KVVGNFLRSLIK
Sbjct: 131 KVVGNFLRSLIK 142

[Close]

BLAST of CmoCh08G005570 vs. ExPASy TrEMBL
Match: A0A6J1KW04 (uncharacterized protein LOC111497689 OS=Cucurbita maxima OX=3661 GN=LOC111497689 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.1e-63
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE 60
           MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRD+FGSPTTKGFENNE
Sbjct: 11  MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDQFGSPTTKGFENNE 70

Query: 61  HKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK 120
           HKSLKQLMNEEEKAETRLGEDEG RGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK
Sbjct: 71  HKSLKQLMNEEEKAETRLGEDEGSRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK 130

Query: 121 KVVGNFLRSLIK 133
           KVVGNFLRSLIK
Sbjct: 131 KVVGNFLRSLIK 142

[Close]

BLAST of CmoCh08G005570 vs. ExPASy TrEMBL
Match: A0A5A7US55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001280 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.5e-36
Identity = 97/136 (71.32%), Postives = 108/136 (79.41%), Query Frame = 0


Query: 1   MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLN-VDNRDRFGSPTTKGFENN 60
           M SESISHK +YDISMSKRTRKPAKIQDELQN T  ++ L+ +D  DR  S       NN
Sbjct: 1   MGSESISHKQHYDISMSKRTRKPAKIQDELQNFTSKDDGLSIIDKGDRSES-------NN 60

Query: 61  EHKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKL 120
           +HKSLKQL++ E KAETRL  DEG R RNSLGQHFSKEE+N NLQIVKKQH+DGLQGVKL
Sbjct: 61  DHKSLKQLISGEGKAETRL--DEGNRERNSLGQHFSKEEIN-NLQIVKKQHQDGLQGVKL 120

Query: 121 KKVVGNFLRSLIKEQG 136
           KKVVG FLR+LIK  G
Sbjct: 121 KKVVGKFLRNLIKGGG 126

[Close]

BLAST of CmoCh08G005570 vs. ExPASy TrEMBL
Match: A0A1S3CFF2 (uncharacterized protein LOC103499874 OS=Cucumis melo OX=3656 GN=LOC103499874 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.5e-36
Identity = 97/136 (71.32%), Postives = 108/136 (79.41%), Query Frame = 0


Query: 1   MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLN-VDNRDRFGSPTTKGFENN 60
           M SESISHK +YDISMSKRTRKPAKIQDELQN T  ++ L+ +D  DR  S       NN
Sbjct: 1   MGSESISHKQHYDISMSKRTRKPAKIQDELQNFTSKDDGLSIIDKGDRSES-------NN 60

Query: 61  EHKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKL 120
           +HKSLKQL++ E KAETRL  DEG R RNSLGQHFSKEE+N NLQIVKKQH+DGLQGVKL
Sbjct: 61  DHKSLKQLISGEGKAETRL--DEGNRERNSLGQHFSKEEIN-NLQIVKKQHQDGLQGVKL 120

Query: 121 KKVVGNFLRSLIKEQG 136
           KKVVG FLR+LIK  G
Sbjct: 121 KKVVGKFLRNLIKGGG 126

[Close]

BLAST of CmoCh08G005570 vs. ExPASy TrEMBL
Match: A0A6J1DDD0 (uncharacterized protein LOC111020003 OS=Momordica charantia OX=3673 GN=LOC111020003 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 4.0e-34
Identity = 90/133 (67.67%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 1   MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE 60
           M SESISH+ +YDISMSKRTRKPAKI+DELQNL+ N +DL   +  +  SP TKGFENN+
Sbjct: 1   MGSESISHQRHYDISMSKRTRKPAKIRDELQNLSLNKDDLLPSH--QVESPPTKGFENND 60

Query: 61  HKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVK-KQHRDGLQGVKL 120
           HKSLKQL+  E KAET+ G DEGGRGR+SLGQHF++++   NLQ+V+ KQ  DGLQ VKL
Sbjct: 61  HKSLKQLITGEGKAETKSGADEGGRGRSSLGQHFNEDK--NNLQMVRSKQQPDGLQRVKL 120

Query: 121 KKVVGNFLRSLIK 133
           KKVVG FLR+LIK
Sbjct: 121 KKVVGKFLRNLIK 129

[Close]

BLAST of CmoCh08G005570 vs. NCBI nr
Match: XP_022959694.1 (uncharacterized protein LOC111460691 [Cucurbita moschata])

HSP 1 Score: 256.5 bits (654), Expect = 1.5e-64
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE 60
           MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE
Sbjct: 11  MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE 70

Query: 61  HKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK 120
           HKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK
Sbjct: 71  HKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK 130

Query: 121 KVVGNFLRSLIK 133
           KVVGNFLRSLIK
Sbjct: 131 KVVGNFLRSLIK 142

[Close]

BLAST of CmoCh08G005570 vs. NCBI nr
Match: XP_023004344.1 (uncharacterized protein LOC111497689 [Cucurbita maxima])

HSP 1 Score: 252.7 bits (644), Expect = 2.2e-63
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE 60
           MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRD+FGSPTTKGFENNE
Sbjct: 11  MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDQFGSPTTKGFENNE 70

Query: 61  HKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK 120
           HKSLKQLMNEEEKAETRLGEDEG RGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK
Sbjct: 71  HKSLKQLMNEEEKAETRLGEDEGSRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK 130

Query: 121 KVVGNFLRSLIK 133
           KVVGNFLRSLIK
Sbjct: 131 KVVGNFLRSLIK 142

[Close]

BLAST of CmoCh08G005570 vs. NCBI nr
Match: KAG7025689.1 (hypothetical protein SDJN02_12187, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.1 bits (632), Expect = 5.4e-62
Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE 60
           ME ESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE
Sbjct: 11  MERESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE 70

Query: 61  HKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK 120
           HKSLKQLMNEEEKAETRLGEDEGGR RNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK
Sbjct: 71  HKSLKQLMNEEEKAETRLGEDEGGRRRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK 130

Query: 121 KVVGNFLRSLIK 133
           KVVG FLRSLIK
Sbjct: 131 KVVGIFLRSLIK 142

[Close]

BLAST of CmoCh08G005570 vs. NCBI nr
Match: KAG6593342.1 (hypothetical protein SDJN03_12818, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248.1 bits (632), Expect = 5.4e-62
Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE 60
           ME ESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE
Sbjct: 1   MERESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE 60

Query: 61  HKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK 120
           HKSLKQLMNEEEKAETRLGEDEGGR RNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK
Sbjct: 61  HKSLKQLMNEEEKAETRLGEDEGGRRRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK 120

Query: 121 KVVGNFLRSLIK 133
           KVVG FLRSLIK
Sbjct: 121 KVVGIFLRSLIK 132

[Close]

BLAST of CmoCh08G005570 vs. NCBI nr
Match: XP_038896195.1 (uncharacterized protein LOC120084478 [Benincasa hispida])

HSP 1 Score: 181.0 bits (458), Expect = 8.1e-42
Identity = 106/137 (77.37%), Postives = 114/137 (83.21%), Query Frame = 0


Query: 1   MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNV-DNRDRFGSPTTKGFE-N 60
           M SESISHKH+YDISMSKRTRKPAKIQDELQNL  NN+DLNV    DRF SP TKGFE  
Sbjct: 1   MGSESISHKHHYDISMSKRTRKPAKIQDELQNLALNNDDLNVIGEGDRFESPATKGFEIE 60

Query: 61  NEHKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVK 120
           N+ KSL+QL+N E K ETR   DEG RGRNSLGQHFSKEE+N NLQIVKKQH+DGLQGVK
Sbjct: 61  NDRKSLEQLINGEGKEETR--SDEGNRGRNSLGQHFSKEEIN-NLQIVKKQHQDGLQGVK 120

Query: 121 LKKVVGNFLRSLIKEQG 136
           LKKVVG FLR+LIK  G
Sbjct: 121 LKKVVGKFLRNLIKGGG 134

The following BLAST results are available for this feature:

BLAST of CmoCh08G005570 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G005570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8U7	7.4e-65	100.00	uncharacterized protein LOC111460691 OS=Cucurbita moschata OX=3662 GN=LOC1114606...	[more]
A0A6J1KW04	1.1e-63	98.48	uncharacterized protein LOC111497689 OS=Cucurbita maxima OX=3661 GN=LOC111497689...	[more]
A0A5A7US55	5.5e-36	71.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFF2	5.5e-36	71.32	uncharacterized protein LOC103499874 OS=Cucumis melo OX=3656 GN=LOC103499874 PE=...	[more]
A0A6J1DDD0	4.0e-34	67.67	uncharacterized protein LOC111020003 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of CmoCh08G005570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959694.1	1.5e-64	100.00	uncharacterized protein LOC111460691 [Cucurbita moschata]	[more]
XP_023004344.1	2.2e-63	98.48	uncharacterized protein LOC111497689 [Cucurbita maxima]	[more]
KAG7025689.1	5.4e-62	97.73	hypothetical protein SDJN02_12187, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6593342.1	5.4e-62	97.73	hypothetical protein SDJN03_12818, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038896195.1	8.1e-42	77.37	uncharacterized protein LOC120084478 [Benincasa hispida]	[more]

BLAST of CmoCh08G005570 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G005570.1	CmoCh08G005570.1	mRNA