CmoCh08G004410 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G004410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	GATA transcription factor 15-like
Location	Cmo_Chr08: 2741465 .. 2741903 (-)
RNA-Seq Expression	CmoCh08G004410
Synteny	CmoCh08G004410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATTTCGAACCAGGGTCTACTCTGTATCGAGCCGCAGAAACAGAGGACCTGCCACCACTGTCGCACCACCAGAACCCCCCTCTGGAGAGCCGGTCCTGCCGGCCCAAGGGTAACCACTTAAACAATGGTGTGATTCATTCATCATTTAATTTCAATAATCTTTTGATTTTGATCGATTTCTGGGATTTTGTTCTCGACAGTCGCTGTGCAATGCGTGTGGGATTAGATACAGGAAGCTGAAGAACAGTAATGGCGGAGTGAATAAGAGTGTTAATGGGAAGAAAGTGGTGAGAGTGGTTGGTTTGGGGAGAGAGATAATGCTGCATAGAGCGACGGCGGCGATGGCGGAAAATGGAGGTGCAGAGACGATCGGAGAAGAAGAACAGGCGGCGGCGATGCTTCTCATGGCTCTATCTTCAGGCTATGTATCATAA

mRNA sequence

ATGGCGATTTCGAACCAGGGTCTACTCTGTATCGAGCCGCAGAAACAGAGGACCTGCCACCACTGTCGCACCACCAGAACCCCCCTCTGGAGAGCCGGTCCTGCCGGCCCAAGGTCGCTGTGCAATGCGTGTGGGATTAGATACAGGAAGCTGAAGAACAGTAATGGCGGAGTGAATAAGAGTGTTAATGGGAAGAAAGTGGTGAGAGTGGTTGGTTTGGGGAGAGAGATAATGCTGCATAGAGCGACGGCGGCGATGGCGGAAAATGGAGGTGCAGAGACGATCGGAGAAGAAGAACAGGCGGCGGCGATGCTTCTCATGGCTCTATCTTCAGGCTATGTATCATAA

Coding sequence (CDS)

ATGGCGATTTCGAACCAGGGTCTACTCTGTATCGAGCCGCAGAAACAGAGGACCTGCCACCACTGTCGCACCACCAGAACCCCCCTCTGGAGAGCCGGTCCTGCCGGCCCAAGGTCGCTGTGCAATGCGTGTGGGATTAGATACAGGAAGCTGAAGAACAGTAATGGCGGAGTGAATAAGAGTGTTAATGGGAAGAAAGTGGTGAGAGTGGTTGGTTTGGGGAGAGAGATAATGCTGCATAGAGCGACGGCGGCGATGGCGGAAAATGGAGGTGCAGAGACGATCGGAGAAGAAGAACAGGCGGCGGCGATGCTTCTCATGGCTCTATCTTCAGGCTATGTATCATAA

Protein sequence

MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS

Homology

[Close]

BLAST of CmoCh08G004410 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-15
Identity = 50/108 (46.30%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 15  KQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRK------------LKNSNGGVNKSV 74
           ++++C  C T++TPLWR GPAGP+SLCNACGIR RK             K  +   N   
Sbjct: 39  EKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNPKF 98

Query: 75  NGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALS 111
                 R++ LGRE+M+ R+T   AEN     +GEEEQ AA+LLMALS
Sbjct: 99  GDSLKQRLMELGREVMMQRST---AENQRRNKLGEEEQ-AAVLLMALS 142

[Close]

BLAST of CmoCh08G004410 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-13
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 15  KQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRK------------LKNSNGGVNKSV 74
           K++TC  C T++TPLWR GP GP+SLCNACGIR RK             K+S+GG N+  
Sbjct: 34  KKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRGGTEDNKKLKKSSSGGGNRKF 93

Query: 75  NGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYV 115
                  ++ LG   +  R+T         + +GEEEQ AA+LLMALS G V
Sbjct: 94  GESLKQSLMDLG---IRKRSTVEKQR----QKLGEEEQ-AAVLLMALSYGSV 137

[Close]

BLAST of CmoCh08G004410 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 17  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGRE 76
           R C  C+TT+TP+WR GP GP+SLCNACGIR+RK + S             + ++   + 
Sbjct: 26  RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSE---------LLGIHIIRSHKS 85

Query: 77  IMLHRATAAMAENGGA-----ETIGEEEQAAAMLLMALSSGYVS 116
           +   +     + +GG       ++ EEEQAA  LL+   S  ++
Sbjct: 86  LASKKINLLSSSHGGVAVKKRRSLKEEEQAALCLLLLSCSSVLA 120

[Close]

BLAST of CmoCh08G004410 vs. ExPASy Swiss-Prot
Match: Q6YW48 (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-10
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 17  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKN-----SNGG 58
           R C  C TT+TPLWR+GP GP+SLCNACGIR RK +      +NGG
Sbjct: 176 RVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKARRAMAAAANGG 221

[Close]

BLAST of CmoCh08G004410 vs. ExPASy Swiss-Prot
Match: Q5HZ36 (GATA transcription factor 21 OS=Arabidopsis thaliana OX=3702 GN=GATA21 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 17  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNS 55
           R C  C TT+TPLWR+GP GP+SLCNACGIR RK + +
Sbjct: 230 RVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRA 267

[Close]

BLAST of CmoCh08G004410 vs. ExPASy TrEMBL
Match: A0A6J1H9M3 (GATA transcription factor 15-like OS=Cucurbita moschata OX=3662 GN=LOC111460872 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.0e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNK 60
           MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNK
Sbjct: 22  MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNK 81

Query: 61  SVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS 116
           SVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS
Sbjct: 82  SVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS 136

[Close]

BLAST of CmoCh08G004410 vs. ExPASy TrEMBL
Match: A0A6J1KR45 (GATA transcription factor 15-like OS=Cucurbita maxima OX=3661 GN=LOC111497907 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.3e-55
Identity = 111/115 (96.52%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNK 60
           MAISNQGLLC EPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKN+NGGVNK
Sbjct: 22  MAISNQGLLCTEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNNNGGVNK 81

Query: 61  SVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS 116
           S NGKKVVRVVGLGREIMLHR TAAMAENGGAETIGEEEQAAAMLLMALSSGYVS
Sbjct: 82  SGNGKKVVRVVGLGREIMLHRTTAAMAENGGAETIGEEEQAAAMLLMALSSGYVS 136

[Close]

BLAST of CmoCh08G004410 vs. ExPASy TrEMBL
Match: A0A0A0K6B1 (GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G405980 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.6e-34
Identity = 86/130 (66.15%), Postives = 98/130 (75.38%), Query Frame = 0


Query: 2   AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK---NSNGGV 61
           A+S +GLL +E +KQR C HCR TRTPLWRAGPAGPRSLCNACGIRYRK+K   N+NGGV
Sbjct: 40  AVSKEGLLELEAEKQRACVHCRATRTPLWRAGPAGPRSLCNACGIRYRKMKMNSNNNGGV 99

Query: 62  NKSVN-----GKKV--------VRVVGLGREIMLHRATAAMA-ENGGAETIGEEEQAAAM 115
           N + N     GKK+        VRVV LGREIM+HR T AM  +N  AE+IGEEEQ AA+
Sbjct: 100 NNNSNNKMGKGKKMGGSGGSLKVRVVRLGREIMVHRPTTAMEDDNEVAESIGEEEQTAAL 159

[Close]

BLAST of CmoCh08G004410 vs. ExPASy TrEMBL
Match: A0A5A7TUD0 (GATA transcription factor 15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001480 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 8.1e-34
Identity = 85/132 (64.39%), Postives = 95/132 (71.97%), Query Frame = 0


Query: 2   AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK--------- 61
           A+S QGL  +E +KQR C HCR TRTPLWRAGPAGPRSLCNACGIRYRK+K         
Sbjct: 35  AVSEQGLFELEAEKQRACVHCRATRTPLWRAGPAGPRSLCNACGIRYRKMKMNSNNDGEV 94

Query: 62  -NSNGGVNKSVNGKKV-------VRVVGLGREIMLH-RATAAMAENGGAETIGEEEQAAA 116
            N+N   NK   GKK+       +RVV LGREIM+H R T AM +NG AE+IGEEEQ AA
Sbjct: 95  NNNNNNNNKMGKGKKMGGGGSLKLRVVRLGREIMVHRRPTTAMEDNGVAESIGEEEQTAA 154

[Close]

BLAST of CmoCh08G004410 vs. ExPASy TrEMBL
Match: A0A1S3BSR7 (GATA transcription factor 15-like OS=Cucumis melo OX=3656 GN=LOC103492777 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.3e-33
Identity = 85/136 (62.50%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 2   AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK--------- 61
           A+S QGL  +E +KQR C HCR TRTPLWRAGPAGPRSLCNACGIRYRK+K         
Sbjct: 35  AVSEQGLFELEAEKQRACVHCRATRTPLWRAGPAGPRSLCNACGIRYRKMKMNSNNDGEV 94

Query: 62  -----NSNGGVNKSVNGKKV-------VRVVGLGREIMLH-RATAAMAENGGAETIGEEE 116
                N+N   NK   GKK+       +RVV LGREIM+H R T AM +NG AE+IGEEE
Sbjct: 95  NNNNNNNNNNNNKMGKGKKMGGGGSLKLRVVRLGREIMVHRRPTTAMEDNGVAESIGEEE 154

[Close]

BLAST of CmoCh08G004410 vs. NCBI nr
Match: XP_022959984.1 (GATA transcription factor 15-like [Cucurbita moschata] >KAG6593223.1 GATA transcription factor 15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030201.1 GATA transcription factor 15, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNK 60
           MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNK
Sbjct: 22  MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNK 81

Query: 61  SVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS 116
           SVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS
Sbjct: 82  SVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS 136

[Close]

BLAST of CmoCh08G004410 vs. NCBI nr
Match: XP_023515141.1 (GATA transcription factor 15-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225.3 bits (573), Expect = 2.6e-55
Identity = 112/115 (97.39%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNK 60
           MAISN GLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNK
Sbjct: 22  MAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNK 81

Query: 61  SVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS 116
           S NGKKVVRVV LGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS
Sbjct: 82  SGNGKKVVRVVDLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS 136

[Close]

BLAST of CmoCh08G004410 vs. NCBI nr
Match: XP_023004687.1 (GATA transcription factor 15-like [Cucurbita maxima])

HSP 1 Score: 225.3 bits (573), Expect = 2.6e-55
Identity = 111/115 (96.52%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNK 60
           MAISNQGLLC EPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKN+NGGVNK
Sbjct: 22  MAISNQGLLCTEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNNNGGVNK 81

Query: 61  SVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS 116
           S NGKKVVRVVGLGREIMLHR TAAMAENGGAETIGEEEQAAAMLLMALSSGYVS
Sbjct: 82  SGNGKKVVRVVGLGREIMLHRTTAAMAENGGAETIGEEEQAAAMLLMALSSGYVS 136

[Close]

BLAST of CmoCh08G004410 vs. NCBI nr
Match: XP_011659382.1 (GATA transcription factor 15 [Cucumis sativus] >KGN44993.1 hypothetical protein Csa_016706 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 7.5e-34
Identity = 86/130 (66.15%), Postives = 98/130 (75.38%), Query Frame = 0


Query: 2   AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK---NSNGGV 61
           A+S +GLL +E +KQR C HCR TRTPLWRAGPAGPRSLCNACGIRYRK+K   N+NGGV
Sbjct: 40  AVSKEGLLELEAEKQRACVHCRATRTPLWRAGPAGPRSLCNACGIRYRKMKMNSNNNGGV 99

Query: 62  NKSVN-----GKKV--------VRVVGLGREIMLHRATAAMA-ENGGAETIGEEEQAAAM 115
           N + N     GKK+        VRVV LGREIM+HR T AM  +N  AE+IGEEEQ AA+
Sbjct: 100 NNNSNNKMGKGKKMGGSGGSLKVRVVRLGREIMVHRPTTAMEDDNEVAESIGEEEQTAAL 159

[Close]

BLAST of CmoCh08G004410 vs. NCBI nr
Match: KAA0046674.1 (GATA transcription factor 15-like [Cucumis melo var. makuwa] >TYK18209.1 GATA transcription factor 15-like [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-33
Identity = 85/132 (64.39%), Postives = 95/132 (71.97%), Query Frame = 0


Query: 2   AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK--------- 61
           A+S QGL  +E +KQR C HCR TRTPLWRAGPAGPRSLCNACGIRYRK+K         
Sbjct: 35  AVSEQGLFELEAEKQRACVHCRATRTPLWRAGPAGPRSLCNACGIRYRKMKMNSNNDGEV 94

Query: 62  -NSNGGVNKSVNGKKV-------VRVVGLGREIMLH-RATAAMAENGGAETIGEEEQAAA 116
            N+N   NK   GKK+       +RVV LGREIM+H R T AM +NG AE+IGEEEQ AA
Sbjct: 95  NNNNNNNNKMGKGKKMGGGGSLKLRVVRLGREIMVHRRPTTAMEDNGVAESIGEEEQTAA 154

[Close]

BLAST of CmoCh08G004410 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 )

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-16
Identity = 50/108 (46.30%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 15  KQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRK------------LKNSNGGVNKSV 74
           ++++C  C T++TPLWR GPAGP+SLCNACGIR RK             K  +   N   
Sbjct: 39  EKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNPKF 98

Query: 75  NGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALS 111
                 R++ LGRE+M+ R+T   AEN     +GEEEQ AA+LLMALS
Sbjct: 99  GDSLKQRLMELGREVMMQRST---AENQRRNKLGEEEQ-AAVLLMALS 142

[Close]

BLAST of CmoCh08G004410 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 )

HSP 1 Score: 74.7 bits (182), Expect = 5.4e-14
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 15  KQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRK------------LKNSNGGVNKSV 74
           K++TC  C T++TPLWR GP GP+SLCNACGIR RK             K+S+GG N+  
Sbjct: 34  KKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRGGTEDNKKLKKSSSGGGNRKF 93

Query: 75  NGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYV 115
                  ++ LG   +  R+T         + +GEEEQ AA+LLMALS G V
Sbjct: 94  GESLKQSLMDLG---IRKRSTVEKQR----QKLGEEEQ-AAVLLMALSYGSV 137

[Close]

BLAST of CmoCh08G004410 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 17  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGRE 76
           R C  C+TT+TP+WR GP GP+SLCNACGIR+RK + S             + ++   + 
Sbjct: 26  RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSE---------LLGIHIIRSHKS 85

Query: 77  IMLHRATAAMAENGGA-----ETIGEEEQAAAMLLMALSSGYVS 116
           +   +     + +GG       ++ EEEQAA  LL+   S  ++
Sbjct: 86  LASKKINLLSSSHGGVAVKKRRSLKEEEQAALCLLLLSCSSVLA 120

[Close]

BLAST of CmoCh08G004410 vs. TAIR 10
Match: AT5G56860.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-11
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 17  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNS 55
           R C  C TT+TPLWR+GP GP+SLCNACGIR RK + +
Sbjct: 230 RVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRA 267

[Close]

BLAST of CmoCh08G004410 vs. TAIR 10
Match: AT4G26150.1 (cytokinin-responsive gata factor 1 )

HSP 1 Score: 63.9 bits (154), Expect = 9.5e-11
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 17  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNS 55
           R C  C TT+TPLWR+GP GP+SLCNACGIR RK + +
Sbjct: 199 RICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRA 236

The following BLAST results are available for this feature:

BLAST of CmoCh08G004410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LG10	2.8e-15	46.30	GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2	[more]
Q9FJ10	7.6e-13	43.75	GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1	[more]
Q8LC59	2.1e-10	34.62	GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2	[more]
Q6YW48	7.8e-10	60.87	Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. ...	[more]
Q5HZ36	1.0e-09	65.79	GATA transcription factor 21 OS=Arabidopsis thaliana OX=3702 GN=GATA21 PE=1 SV=2	[more]

BLAST of CmoCh08G004410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H9M3	8.0e-58	100.00	GATA transcription factor 15-like OS=Cucurbita moschata OX=3662 GN=LOC111460872 ...	[more]
A0A6J1KR45	1.3e-55	96.52	GATA transcription factor 15-like OS=Cucurbita maxima OX=3661 GN=LOC111497907 PE...	[more]
A0A0A0K6B1	3.6e-34	66.15	GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G405980 P...	[more]
A0A5A7TUD0	8.1e-34	64.39	GATA transcription factor 15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BSR7	2.3e-33	62.50	GATA transcription factor 15-like OS=Cucumis melo OX=3656 GN=LOC103492777 PE=4 S...	[more]

BLAST of CmoCh08G004410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959984.1	1.7e-57	100.00	GATA transcription factor 15-like [Cucurbita moschata] >KAG6593223.1 GATA transc...	[more]
XP_023515141.1	2.6e-55	97.39	GATA transcription factor 15-like [Cucurbita pepo subsp. pepo]	[more]
XP_023004687.1	2.6e-55	96.52	GATA transcription factor 15-like [Cucurbita maxima]	[more]
XP_011659382.1	7.5e-34	66.15	GATA transcription factor 15 [Cucumis sativus] >KGN44993.1 hypothetical protein ...	[more]
KAA0046674.1	1.7e-33	64.39	GATA transcription factor 15-like [Cucumis melo var. makuwa] >TYK18209.1 GATA tr...	[more]

BLAST of CmoCh08G004410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06740.1	2.0e-16	46.30	GATA transcription factor 15	[more]
AT5G49300.1	5.4e-14	43.75	GATA transcription factor 16	[more]
AT5G26930.1	1.5e-11	34.62	GATA transcription factor 23	[more]
AT5G56860.1	7.3e-11	65.79	GATA type zinc finger transcription factor family protein	[more]
AT4G26150.1	9.5e-11	65.79	cytokinin-responsive gata factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 13..65 e-value: 7.4E-13 score: 58.7
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 19..50 e-value: 1.0E-16 score: 60.2
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 19..44
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 13..49 score: 12.47909
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 18..66 e-value: 2.97253E-14 score: 60.079
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 14..71 e-value: 6.2E-17 score: 63.4
None	No IPR available	PANTHER	PTHR47172:SF9	GATA TRANSCRIPTION FACTOR 16	coord: 14..65
None	No IPR available	PANTHER	PTHR47172	OS01G0976800 PROTEIN	coord: 14..65 coord: 63..114
None	No IPR available	PANTHER	PTHR47172:SF9	GATA TRANSCRIPTION FACTOR 16	coord: 63..114
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 15..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G004410.1	CmoCh08G004410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding