CmoCh08G004400 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G004400
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr08: 2739613 .. 2739960 (+)
RNA-Seq Expression	CmoCh08G004400
Synteny	CmoCh08G004400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGAAACGATTTCGCCAGAAGCAGTGGGGGGACTGTAATAATAGTAAGGATAATATGGTAAAATTGGATTCGGCGGCGGGGGAGGAGCAAGGCCGGGGAATTGGTCACCATCGGCCGGCTGGTACGGCTGGACAGAGGATGGCGGCAACGGAGAAGGGTGGATGCAGGTACTGCACGAGGGCGGAGGCGGAGGAGGAGGGCATTGTGAAGTGGGAGGTGGCGGTGGCGGTGGCGGCGGAGGGAGTTGGCAGGGGTTGTCACAACTTGAGCACATGGAACAGCCGACCTGATCCTTGGCCACGGCGGTCGCCGATGAGAGAAAGGAAAATTTATAGTGTGTGA

mRNA sequence

ATGAAATTGAAACGATTTCGCCAGAAGCAGTGGGGGGACTGTAATAATAGTAAGGATAATATGGTAAAATTGGATTCGGCGGCGGGGGAGGAGCAAGGCCGGGGAATTGGTCACCATCGGCCGGCTGGTACGGCTGGACAGAGGATGGCGGCAACGGAGAAGGGTGGATGCAGGTACTGCACGAGGGCGGAGGCGGAGGAGGAGGGCATTGTGAAGTGGGAGGTGGCGGTGGCGGTGGCGGCGGAGGGAGTTGGCAGGGGTTGTCACAACTTGAGCACATGGAACAGCCGACCTGATCCTTGGCCACGGCGGTCGCCGATGAGAGAAAGGAAAATTTATAGTGTGTGA

Coding sequence (CDS)

ATGAAATTGAAACGATTTCGCCAGAAGCAGTGGGGGGACTGTAATAATAGTAAGGATAATATGGTAAAATTGGATTCGGCGGCGGGGGAGGAGCAAGGCCGGGGAATTGGTCACCATCGGCCGGCTGGTACGGCTGGACAGAGGATGGCGGCAACGGAGAAGGGTGGATGCAGGTACTGCACGAGGGCGGAGGCGGAGGAGGAGGGCATTGTGAAGTGGGAGGTGGCGGTGGCGGTGGCGGCGGAGGGAGTTGGCAGGGGTTGTCACAACTTGAGCACATGGAACAGCCGACCTGATCCTTGGCCACGGCGGTCGCCGATGAGAGAAAGGAAAATTTATAGTGTGTGA

Protein sequence

MKLKRFRQKQWGDCNNSKDNMVKLDSAAGEEQGRGIGHHRPAGTAGQRMAATEKGGCRYCTRAEAEEEGIVKWEVAVAVAAEGVGRGCHNLSTWNSRPDPWPRRSPMRERKIYSV

Homology

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BLAST of CmoCh08G004400 vs. ExPASy TrEMBL
Match: A0A0A0KB51 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405960 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.4e-16
Identity = 65/156 (41.67%), Postives = 71/156 (45.51%), Query Frame = 0


Query: 1   MKLKRFRQKQWGDCNNSKDNMVKLDSAAGEEQGRGIGHHRPAGTAGQRMAATEKGGCRYC 60
           MK++R  +KQ G+ NNSK+N VKL SA   EQ   IGH R  GTAGQRMAA  KG   + 
Sbjct: 1   MKMERIWEKQRGESNNSKENTVKLGSAEA-EQCLEIGHRRTEGTAGQRMAAEGKGRRMHR 60

Query: 61  TRAEAEEEGIVKWEVAVA------------------------------------------ 105
           TR    EEGI KW VAV                                           
Sbjct: 61  TREARVEEGIEKWGVAVGEMEAEGTGAGEGIRQPAAAAGARVEEGIEKWGVAVGEMEAEG 120

The following BLAST results are available for this feature:

BLAST of CmoCh08G004400 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G004400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB51	3.4e-16	41.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405960 PE=4 SV=1	[more]

BLAST of CmoCh08G004400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmoCh08G004400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G004400.1	CmoCh08G004400.1	mRNA