CmoCh08G002690 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G002690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LOB domain-containing protein
Location	Cmo_Chr08: 1684199 .. 1685056 (+)
RNA-Seq Expression	CmoCh08G002690
Synteny	CmoCh08G002690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCTCCTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTCCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGACCTCGGCGCCTCCCACTTCTCCGCCGTCCACAAAGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCTCACCGGAGCCTAGCCGCCGTCACCATCTCCTACGAAGCTCAAGCACGACTTCAAGATCCGATCTACGGCTGTATCTCCCAGATTTTCGCTCTCCAACATCAGGTCGTTTTTTCTCTCGCGTTATATGTTATGTAATTTACTGTGATGTCCCAAGTTGGTTGGAGAGGAGAACAAATCACCATTTATAAGGGTGTGGAAACCTTCTCCTATCAGACGCGTTTTAAAGCCCTGAAGAGAAACCCAAAGAGAACAATATCTGCTAGCGGTGGATCTGGGGCTCGGGCGTTACATTTACTTAACGTATACTCGAACGATAATTTATATAATCGAGCTTAGTACTCGTCGGTTTAACGTTTTTCGTGTTTTTCGTGATCGGTTATTCGAAACCCTAATTTTTGGAGATGTTAATAGGTTGTGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCATTCTTAACGGCTACATTACAAGAAACCCTAATGAATTACTGTACGGAAACTCTTTGTCTTATTCCGATGAGGAATTGCTGGATCTTCAAACTTGGCTGCTGGAGGAGAGCTGCAGCACCGCCGCACCGGAGTTTGAACCTACGGCGGGGCCGTACGTTCAGATGGGCGTCGCCGATTCTAATCTCGCCGGAGATTTCTGCTGTTAA

mRNA sequence

ATGGCGGCCTCCTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTCCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGACCTCGGCGCCTCCCACTTCTCCGCCGTCCACAAAGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCTCACCGGAGCCTAGCCGCCGTCACCATCTCCTACGAAGCTCAAGCACGACTTCAAGATCCGATCTACGGCTGTATCTCCCAGATTTTCGCTCTCCAACATCAGGTTGTGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCATTCTTAACGGCTACATTACAAGAAACCCTAATGAATTACTGTACGGAAACTCTTTGTCTTATTCCGATGAGGAATTGCTGGATCTTCAAACTTGGCTGCTGGAGGAGAGCTGCAGCACCGCCGCACCGGAGTTTGAACCTACGGCGGGGCCGTACGTTCAGATGGGCGTCGCCGATTCTAATCTCGCCGGAGATTTCTGCTGTTAA

Coding sequence (CDS)

ATGGCGGCCTCCTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTCCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGACCTCGGCGCCTCCCACTTCTCCGCCGTCCACAAAGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCTCACCGGAGCCTAGCCGCCGTCACCATCTCCTACGAAGCTCAAGCACGACTTCAAGATCCGATCTACGGCTGTATCTCCCAGATTTTCGCTCTCCAACATCAGGTTGTGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCATTCTTAACGGCTACATTACAAGAAACCCTAATGAATTACTGTACGGAAACTCTTTGTCTTATTCCGATGAGGAATTGCTGGATCTTCAAACTTGGCTGCTGGAGGAGAGCTGCAGCACCGCCGCACCGGAGTTTGAACCTACGGCGGGGCCGTACGTTCAGATGGGCGTCGCCGATTCTAATCTCGCCGGAGATTTCTGCTGTTAA

Protein sequence

MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFCC

Homology

[Close]

BLAST of CmoCh08G002690 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.5e-44
Identity = 90/133 (67.67%), Postives = 109/133 (81.95%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           ++SSSS  PCGACKFLRRKC  GC+FAPYF H+ GASHF+A+HKVFGASNASKLL+HLP+
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQ--IILNGY 121
           S R  AA+TISYEAQARLQDPIYGC+S IFALQ QVVNL+A++  L++QAAQ  I  +  
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSP 122

Query: 122 ITRNPNELLYGNS 133
            + NPN   YG++
Sbjct: 123 TSENPNS-YYGDT 134

[Close]

BLAST of CmoCh08G002690 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.6e-39
Identity = 77/104 (74.04%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 10  PCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAV 69
           PCGACKFLRRKCV GC+FAPYF H+ GA+HF+A+HKVFGASN SKLLAHLP++ R  AAV
Sbjct: 7   PCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAV 66

Query: 70  TISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQ 114
           TISYEAQARL+DPIYGC++ IFALQ QV+ L+AQ+A L+  AAQ
Sbjct: 67  TISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAAQ 110

[Close]

BLAST of CmoCh08G002690 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.4e-39
Identity = 78/123 (63.41%), Postives = 96/123 (78.05%), Query Frame = 0


Query: 5   SSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHR 64
           + S  PCGACKFLRR+CV GC+FAPYF H+ GASHF+A+H+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 65  SLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQ--IILNGYITR 124
             AA TI YEAQAR QDPIYGC+S IF+LQ QVVNL+ Q+  L++QA Q  + ++     
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPSIE 121

Query: 125 NPN 126
           NPN
Sbjct: 122 NPN 124

[Close]

BLAST of CmoCh08G002690 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 155.2 bits (391), Expect = 7.0e-37
Identity = 74/107 (69.16%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 10  PCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAV 69
           PCGACKFLRRKCV GCIFAPYF  + G+++F+AVHKVFGASN SKLL H+PV  RS A V
Sbjct: 37  PCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVV 96

Query: 70  TISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIIL 117
           TI YEAQAR++DPIYGC++ IFALQ QVVNL+A+V+YL+   A + L
Sbjct: 97  TICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLEL 143

[Close]

BLAST of CmoCh08G002690 vs. ExPASy Swiss-Prot
Match: Q9SJW5 (LOB domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=LBD14 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.5e-35
Identity = 70/104 (67.31%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 10  PCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAV 69
           PCG CKFLRRKCV GC+FAPYF ++ G+S+F+A+HKVFGASN SKL++HLP   R  A  
Sbjct: 7   PCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVR 66

Query: 70  TISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQ 114
           TISYEA +RL DPIYGC+SQIF+LQ QVV+L+AQV  LRE+A++
Sbjct: 67  TISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

[Close]

BLAST of CmoCh08G002690 vs. ExPASy TrEMBL
Match: A0A6J1H9E4 (LOB domain-containing protein 29-like OS=Cucurbita moschata OX=3662 GN=LOC111460814 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.5e-98
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLP 60
           MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLP
Sbjct: 1   MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLP 60

Query: 61  VSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYI 120
           VSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYI
Sbjct: 61  VSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYI 120

Query: 121 TRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 180
           TRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF
Sbjct: 121 TRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 180

Query: 181 CC 183
           CC
Sbjct: 181 CC 182

[Close]

BLAST of CmoCh08G002690 vs. ExPASy TrEMBL
Match: A0A6J1KRG7 (LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC111498009 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 2.9e-94
Identity = 172/181 (95.03%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           ++SSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV
Sbjct: 5   SSSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 64

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT 121
           SHRS AAVTISYEAQARLQDPIYGCISQIFALQHQV+NLRAQVAYLREQAAQI+LNGYIT
Sbjct: 65  SHRSQAAVTISYEAQARLQDPIYGCISQIFALQHQVMNLRAQVAYLREQAAQILLNGYIT 124

Query: 122 RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC 181
           RNPNELLYGNSLSYSDE+LLDLQTWLLEESCSTAAPEFEPTA PYV+MG+ADSNLAGDFC
Sbjct: 125 RNPNELLYGNSLSYSDEQLLDLQTWLLEESCSTAAPEFEPTAAPYVEMGIADSNLAGDFC 184

Query: 182 C 183
           C
Sbjct: 185 C 185

[Close]

BLAST of CmoCh08G002690 vs. ExPASy TrEMBL
Match: A0A0A0K5D4 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.5e-77
Identity = 147/182 (80.77%), Postives = 157/182 (86.26%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           A+SSSS+PPCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLAHLPV
Sbjct: 3   ASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT 121
           SHR  AAVTISYEAQARLQDPIYGC+S I ALQ QV+NLRAQVAYLREQAAQI+LN Y T
Sbjct: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTT 122

Query: 122 RNPNELLYGNS-LSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 181
           RNP ELLY  S   YSD+  LDLQ+WLL ESCS  APE EP A PY +M V DS LAGDF
Sbjct: 123 RNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGDF 182

Query: 182 CC 183
           CC
Sbjct: 183 CC 184

[Close]

BLAST of CmoCh08G002690 vs. ExPASy TrEMBL
Match: A0A5D3D179 (LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003110 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.3e-75
Identity = 146/182 (80.22%), Postives = 157/182 (86.26%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           A+SSSSS PCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLAHLPV
Sbjct: 3   ASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT 121
           SHR  AAVTISYEAQARLQDPIYGC+S I ALQ QV+NLRAQVA LREQAAQI+LN Y T
Sbjct: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTT 122

Query: 122 RNPNELLYGNS-LSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 181
           RNP EL Y  S L YSD+  LDLQ+WLL ESC+ AAPEFEP A PY +M V +S LAGDF
Sbjct: 123 RNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAGDF 182

Query: 182 CC 183
           CC
Sbjct: 183 CC 184

[Close]

BLAST of CmoCh08G002690 vs. ExPASy TrEMBL
Match: A0A1S3BGZ5 (LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.5e-74
Identity = 145/182 (79.67%), Postives = 155/182 (85.16%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           A+SSSSS PCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLAHLPV
Sbjct: 3   ASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT 121
           SHR  AAVTISYEAQARLQDPIYGC+S I ALQ QV+NLRAQVA LREQAAQI+LN Y T
Sbjct: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTT 122

Query: 122 RNPNELLYGNS-LSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 181
           RN  EL Y  S   YSD+  LDLQ+WLL ESC+ AAPEFEP A PY +M V DS LAGDF
Sbjct: 123 RNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAGDF 182

Query: 182 CC 183
           CC
Sbjct: 183 CC 184

[Close]

BLAST of CmoCh08G002690 vs. NCBI nr
Match: XP_022959894.1 (LOB domain-containing protein 29-like [Cucurbita moschata] >KAG7025463.1 LOB domain-containing protein 29, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367.9 bits (943), Expect = 5.2e-98
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLP 60
           MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLP
Sbjct: 1   MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLP 60

Query: 61  VSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYI 120
           VSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYI
Sbjct: 61  VSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYI 120

Query: 121 TRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 180
           TRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF
Sbjct: 121 TRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 180

Query: 181 CC 183
           CC
Sbjct: 181 CC 182

[Close]

BLAST of CmoCh08G002690 vs. NCBI nr
Match: KAG6593055.1 (LOB domain-containing protein 29, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 364.8 bits (935), Expect = 4.4e-97
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           A+SSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV
Sbjct: 3   ASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT 121
           SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT
Sbjct: 63  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT 122

Query: 122 RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC 181
           RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC
Sbjct: 123 RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC 182

Query: 182 C 183
           C
Sbjct: 183 C 183

[Close]

BLAST of CmoCh08G002690 vs. NCBI nr
Match: XP_023515354.1 (LOB domain-containing protein 29-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362.1 bits (928), Expect = 2.9e-96
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           A+SSSSSPPCGACKFLRRKCVNGCIFAPYF HDLGASHFSAVHKVFGASNASKLLAHLPV
Sbjct: 3   ASSSSSSPPCGACKFLRRKCVNGCIFAPYFPHDLGASHFSAVHKVFGASNASKLLAHLPV 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT 121
           SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT
Sbjct: 63  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT 122

Query: 122 RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC 181
           RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC
Sbjct: 123 RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC 182

Query: 182 C 183
           C
Sbjct: 183 C 183

[Close]

BLAST of CmoCh08G002690 vs. NCBI nr
Match: XP_023004822.1 (LOB domain-containing protein 29-like [Cucurbita maxima])

HSP 1 Score: 354.4 bits (908), Expect = 6.0e-94
Identity = 172/181 (95.03%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           ++SSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV
Sbjct: 5   SSSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 64

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT 121
           SHRS AAVTISYEAQARLQDPIYGCISQIFALQHQV+NLRAQVAYLREQAAQI+LNGYIT
Sbjct: 65  SHRSQAAVTISYEAQARLQDPIYGCISQIFALQHQVMNLRAQVAYLREQAAQILLNGYIT 124

Query: 122 RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC 181
           RNPNELLYGNSLSYSDE+LLDLQTWLLEESCSTAAPEFEPTA PYV+MG+ADSNLAGDFC
Sbjct: 125 RNPNELLYGNSLSYSDEQLLDLQTWLLEESCSTAAPEFEPTAAPYVEMGIADSNLAGDFC 184

Query: 182 C 183
           C
Sbjct: 185 C 185

[Close]

BLAST of CmoCh08G002690 vs. NCBI nr
Match: XP_038896394.1 (LOB domain-containing protein 29-like [Benincasa hispida])

HSP 1 Score: 304.3 bits (778), Expect = 7.1e-79
Identity = 151/180 (83.89%), Postives = 161/180 (89.44%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           A+SSSSSPPCGACKFLRRKCVNGCIFAP+FRH+LGASHFSA+HKVFGASNASKLLAHLPV
Sbjct: 3   ASSSSSSPPCGACKFLRRKCVNGCIFAPHFRHELGASHFSAIHKVFGASNASKLLAHLPV 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT 121
           SHR  AAVTISYEAQARLQDPIYGC+S IFALQ QV+NLRAQVAYLREQAAQI+LN Y T
Sbjct: 63  SHRCDAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTT 122

Query: 122 RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC 181
           RNP EL Y  S  YSD+ LLDLQTWLL ESCS AAPEFEP A PYV+M V DSNLAG+FC
Sbjct: 123 RNPIELPYEKSPFYSDDPLLDLQTWLLAESCSAAAPEFEPAAVPYVEMSVVDSNLAGNFC 182

[Close]

BLAST of CmoCh08G002690 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-45
Identity = 90/133 (67.67%), Postives = 109/133 (81.95%), Query Frame = 0


Query: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61
           ++SSSS  PCGACKFLRRKC  GC+FAPYF H+ GASHF+A+HKVFGASNASKLL+HLP+
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQ--IILNGY 121
           S R  AA+TISYEAQARLQDPIYGC+S IFALQ QVVNL+A++  L++QAAQ  I  +  
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSP 122

Query: 122 ITRNPNELLYGNS 133
            + NPN   YG++
Sbjct: 123 TSENPNS-YYGDT 134

[Close]

BLAST of CmoCh08G002690 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 161.8 bits (408), Expect = 5.3e-40
Identity = 78/123 (63.41%), Postives = 96/123 (78.05%), Query Frame = 0


Query: 5   SSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHR 64
           + S  PCGACKFLRR+CV GC+FAPYF H+ GASHF+A+H+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 65  SLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQ--IILNGYITR 124
             AA TI YEAQAR QDPIYGC+S IF+LQ QVVNL+ Q+  L++QA Q  + ++     
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPSIE 121

Query: 125 NPN 126
           NPN
Sbjct: 122 NPN 124

[Close]

BLAST of CmoCh08G002690 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 155.2 bits (391), Expect = 5.0e-38
Identity = 74/107 (69.16%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 10  PCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAV 69
           PCGACKFLRRKCV GCIFAPYF  + G+++F+AVHKVFGASN SKLL H+PV  RS A V
Sbjct: 37  PCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVV 96

Query: 70  TISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIIL 117
           TI YEAQAR++DPIYGC++ IFALQ QVVNL+A+V+YL+   A + L
Sbjct: 97  TICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLEL 143

[Close]

BLAST of CmoCh08G002690 vs. TAIR 10
Match: AT2G31310.1 (LOB domain-containing protein 14 )

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-36
Identity = 70/104 (67.31%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 10  PCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAV 69
           PCG CKFLRRKCV GC+FAPYF ++ G+S+F+A+HKVFGASN SKL++HLP   R  A  
Sbjct: 7   PCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVR 66

Query: 70  TISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQ 114
           TISYEA +RL DPIYGC+SQIF+LQ QVV+L+AQV  LRE+A++
Sbjct: 67  TISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

[Close]

BLAST of CmoCh08G002690 vs. TAIR 10
Match: AT4G00210.1 (LOB domain-containing protein 31 )

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-35
Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 10  PCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAV 69
           PCGACKFLRRKCV  C+FAPYF    G SHF+AVHKVFGASNASKLL  +P S R  A V
Sbjct: 11  PCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDAVV 70

Query: 70  TISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQI 115
           T++YEA ARL+DP+YGC+  IFALQHQV+NL+A++AY++ Q + +
Sbjct: 71  TLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTL 115

The following BLAST results are available for this feature:

BLAST of CmoCh08G002690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2J7	1.5e-44	67.67	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
Q5UG13	2.6e-39	74.04	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q9SLB6	7.4e-39	63.41	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]
O22131	7.0e-37	69.16	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
Q9SJW5	6.5e-35	67.31	LOB domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=LBD14 PE=1 S...	[more]

BLAST of CmoCh08G002690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H9E4	2.5e-98	100.00	LOB domain-containing protein 29-like OS=Cucurbita moschata OX=3662 GN=LOC111460...	[more]
A0A6J1KRG7	2.9e-94	95.03	LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC11149800...	[more]
A0A0A0K5D4	2.5e-77	80.77	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV...	[more]
A0A5D3D179	2.3e-75	80.22	LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BGZ5	1.5e-74	79.67	LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV...	[more]

BLAST of CmoCh08G002690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959894.1	5.2e-98	100.00	LOB domain-containing protein 29-like [Cucurbita moschata] >KAG7025463.1 LOB dom...	[more]
KAG6593055.1	4.4e-97	99.45	LOB domain-containing protein 29, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023515354.1	2.9e-96	98.90	LOB domain-containing protein 29-like [Cucurbita pepo subsp. pepo]	[more]
XP_023004822.1	6.0e-94	95.03	LOB domain-containing protein 29-like [Cucurbita maxima]	[more]
XP_038896394.1	7.1e-79	83.89	LOB domain-containing protein 29-like [Benincasa hispida]	[more]

BLAST of CmoCh08G002690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58190.1	1.1e-45	67.67	lateral organ boundaries-domain 29	[more]
AT2G42440.1	5.3e-40	63.41	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G45420.1	5.0e-38	69.16	LOB domain-containing protein 18	[more]
AT2G31310.1	4.6e-36	67.31	LOB domain-containing protein 14	[more]
AT4G00210.1	1.8e-35	65.71	LOB domain-containing protein 31	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 10..107 e-value: 6.5E-34 score: 116.5
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 9..111 score: 21.704844
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 6..126
None	No IPR available	PANTHER	PTHR31529:SF26	LOB DOMAIN-CONTAINING PROTEIN 17-RELATED	coord: 6..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G002690.1	CmoCh08G002690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus