CmoCh08G002400 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G002400
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptiontranscription initiation factor TFIID subunit 1 isoform X1
LocationCmo_Chr08: 1448744 .. 1455641 (-)
RNA-Seq ExpressionCmoCh08G002400
SyntenyCmoCh08G002400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCGAAACATACGGTGATTCCCAAGACGAAAGGGATGAAGGTAAGCCAGTTGATTTAAACCAGTTCTAGGCTCTTTGTTTGAATATATATATATATATTTTTTATTGTTGTTCTTATTATTTTTACGTTCGGAAGTTTACAGTTTGCGGGTCTAAACATCTTTTCTTTCTTATTGGTCTCTTCATCTTAGATATGAGTGAGATTGGTGGAGCAAACTGAAATTATGAATTTTTATTAATGTCAAATCTGGTATTGGATACCTTGGGTTTCTTATTTATAGGCTCAGTATGGAAATGAAGTTAAAATATAAGACAATGAACTCATAGTGAACGATGAAACTCCTTAATTCTAATTTCCACAGTATTGATACTGGCTACTAAGCAACTAGTAACTTAACTCATGGTAATGAAATCAGACACGAGTTACCTACAAAAGTTTCCTCCCTTCTCCCCCAACAGAAGTACTTTTACTGGAGTAGAAACCACTGCCCAGCCCACTAGTAGGATTTAACCATATTTGAGACATTGATTGCACTTGGAATGTGAAGATCTCGTGGTAGTTCAATGACATAAGAATTAGGGGCGACTAAGGATCACAACCACCTTTCGGGGAGCTCCTTCATCTGTCCTTTTGTGATTAGGGGCGTTTCCTGTTGTGGCTTTCCAGGTTTATGTGATTTTGTGGGGCCTTTGTGTTGTGAGGAGTAATAAAATGTTTAGGGTGTTGAGAGACCAAAGGTGATAAGTGCCAACAATGCTGGATTTTGCAAAGCTAGAGGTTCTTCTAGAATCCTTGCAAAACGTTCACAAAGAAAGCTAACTTAACGGATTGATTCCAACCAAGAGCTGGTTAGAAGGGTACATGGAAGTGATCAGTTGTTGGATTCATATAAAAAGGAGGAGGTGTGGTCCCTTGTTAGATCCATACTTTCCTCTAGGCTTTGGCTCTAAGGCTTTTTGTAATCCTATAGGAACTTATTTTGGAGGATTGAAGCCCAAGTTTGGCTCTTTTTGGTGTGGACTTTCTTTTTTTATGCCCCTTATATTTTTTCATTTTTTCTCAATAAAAAATTTCGTTTCTTGTTAAAAAAGGAAGCAAAGTTAATACCTTGGATTGTATCATGAGGAAGTCTTTTGTGCTGATTGGGCTTCAATGCTATATCCTTTGTAGGATGGCATTTGAGGATATTGATCACACTCTTGGGAGTTGCCAATATTCCTCTCTTGTCTGGAGTCACTTTTTCATAGTGTTAGGTTCTTATTGGGTTCCACCTATTAAGTGTAGGTCCATGGTAAAAAAAGTTTCTTCTTCACCCTACCCTTTTGTGTTATGGGTCTCTTTTTGTGGCCTGCTGATTTTGTGGGGTCTTGGTTAGAGAGAAGCAGTAAGATTTTTAAGGAGATTGAGAGATTGAGCGAGGAGGTGCTGTCTCTTGTGAGGTTTCATGTTTCTCTTTAGGCTTCAATGCATAAGGACTTTTGTAATTATCCTTTAGGTCCCATCTTGTTAGTTTGGAGTCCCTCTGTTCTAGTTTGTCTCCTTTTGTTCAAACTGCCTTATTGTTTGCCCTTTGTATTATTTTCTTTCTTTATGCTCTTTGCATTCTCAATCAAAGCATGGTTTTTGATTAAAGAAAATTTAGGAAGAATAATTTCAATTTGCATAGTTACGTTATTAACTCTTATCAGTCATTCAATCACAGTGACATTGTTAACTTTTGCAATTTTAAATTCATTTTGAAAACTAAAAATAAAAAACTGTGTATTATTGTGGATCATGAGTAGAAAACTGTGTTTATGTACTTATGATATTTTGACTGCAGATGATGATGACTATGAGGATGCTGGTGGTGGCAATCGATTATTGGGGTTTATGTTTGGGAATGTGGATAATTCTGGTGATCTTGATGCCGATTATCTTGATGAGGTAATATTATTGCTCCTAGTTCTAGTGGCATTTTTGTAGAACTAGATCTGTTGGAGGACAGTGTGCCAGAAAGATGTAAGCTATGGACTCATTCTATTAGAAGATTGCTGTACCAAAATACTGGTTTTGGCACCATAGATTTTGCAACTAGACTTGTTATCTTCCAAATATGATCTGTTGAAGTCTGAAAATTCTTAAGAAAACCTTAACTTGTTACACTTGTAACAATTAGTTCTTTCAGTAATCTGACCTTTCATCTTATTTGTCTGACACTTAATTTTCTCATTAATATCATATTATGGATGCGTTGGAAATGATCTTGTGTTCTAGGATGCAAAGGAACATCTGGCTGCACTGGCGGATAAGTTGGGTCCAACTTTGACAGATATTGATGTAAGAATTTTTATGATTCTGAATATCCTCTATAGTTTTCATTTGGTTTTGTGGTCTTCGTATGTAGCTTCCTGTGTTCGTATACCATCTCTCATTGCTCTTTAATAACATTCAACTACTGCATCTGTATCTTTCAGAGTTTGATAGTTTCTTTTCCCCCTTCTATCTTTTTCTTTGATGCCTGCAATTTTTCAAATTTTTCAGTTGTCGACGAAATCACCAAAAATACCATCTGATGCTATTGAACCAGGTGAAGTTGTATTTATAAATTTACCTAGTAGTCTTCCGAGTTTTATTTTTATGTTCGATACCTTTATCTTCAAATACATTTTCACGAGACTTGCTAAAAATATTGTGTGAACTGTGCTTTTTTCTGATCTTAATAATGAAAGCTACTTGATAAATATTATTGTTAGCTGGGTGCTTCCGCCATTCTACAGACTGATGACTTATAATTTGTTCAGTTTTAGGGCTTTCTAACTGAACCTTGGGAGTTCGTTTGTTTATTTTTTAAATTGGAATTGGGATCATAATCTTAGGTGTTTTTTTAGTGCGTATTTATTGTTAGAGAGGTTGATATACTGATGAGGTCGTATAGGTATGGTTATGTTGTAGGTTCCTTGGTTATTCCTCCGGTATCCATGAAACATACCACCTTTATTTTTTAGTAATAGCCTTCTCAAAGTTTCATTTAATTTCCTTTTCATTTATATCAAAATCATGATTATCATATATATATATATAGGAAACAAATTTTAATGATGTATGAAATGTACAAAAGTGGGGCGGAAGTTTGAGCGAAAGTGGGTACAAAAGATTTTCCAATTGGACAAAAGTGAAGATTACCAATAAGAGAAAGAGGAGGTGAATTTTGACGAAGACAGCTAAAAAGGAAATTTGTTGAAAAAAAGCTGTCAAAGAATCTTCCTTCCTCGTTTAAAAGTTGATGATTCCATTCTATCCATGTAATCCACAAGAAGGCTCAAATTAGTTGAGGAGGCTGTTCAGATCAATGGGGGAGAGACGTGGACTAGTGGAAGGTGGAGAGTAACTCTTTTCAAAATCTGTCTGCATCATTACGAGTAAGAAACTGTGCTTCTGAAAGCAAGAGCAATCTTGTAGAGAAGTTCCCTTTGGAGTCAATTTTTTAGAACCATTCGTCTTTGGGATGTGTTAAATGCACAACTATCCATACGTCAAAGTGTCTAGGACTAAATTGTTACAAACTATAGTATAGAGATTAAAGTATTATGAAAGTTAAAGGGCCAAAAGTGTTTTTTGACCTATACAGTTGGTTCAAAAATACCCTTACAGATAGTTTTGGATGAATACCCTTAATATTTTCTTTCGAAAATGCCCTTGAATTTTCAAAATGGTTTCAAAAATACCCTTTTAATATTTAAAAATGTTCAAAAAATATCCTTGAATTTTCAAAAGTTTGAGTAATACTCTAAATTTTTTTTAAAACCTTCAAAAATACTCTTACCATTTGTACCTCGTTTAAAAAATACTCATGAATTTTCAAAAATAACATTAAAAAGTTTAGAGATAATCTATGAGGTGTTGATAGACAGTTTTCGTCTATATATCGACAGTAATAATTTTTTTATAAAGGTAAAGAGTGTTAATGCTATTTTTAAAATTTCATGGGTATTTTTTAAACATAGTACTAATGGTAATGATATTCTTAAACTCTTTAAGGGTATTAATGAAACTTTTTAAAGTTCAAGGGTGTTTTTGAAACACTATTAAAAGTTCAAGGGTAATTTTGAAATACAGTACTAATGGTTTCCATCCAAAACTAACGGAAATGGTATTTTTGAGACTTTTTTGAAAGTTGAAGGGTATTATTGAAACTTTTGAAAGTTTAGCGGTATTTTCGAGACAAAATACAAAGTTTAGGGTTATTATATTTGTTCATACTAACCTTATGCCATAGTGAATGGGCCTCTAAGGGGAAGCGCGACAACCCTTTAGCTAGATGGGCATTATTATGAGTTCAACTTCCTAAGAAAACATTAATTATTTGATACCTGCTATAAAACACGGACACATGCATAATATAATGGCAAAGTGTCGATGTCGGACACACGTACTCTCGAACATGCTTTCTGCACGTGTCCAATACACTATATTGTGTGTCCATTTTTTTTTGTATTTATCATTTTTGGACACACGAGGGCACACTCTCAGACACTTGGTTGGCATGAACACATGTTTTGGCAATCGAGGTGCTTGACCCTCTAATCTTGAAGATTTTTTTTTTTTTTTTAAAGAAGAGTTGAATAAAAAGATGAAGAGTTTTTAGAAGGAGACGAAAAGACGAAGGAGAAGAAGAATAGAAAAAAAGAAAAGAAGGAAAAAGTTGAAACGTGAAAAGAACCCAGGAGAAAAAGAATAGAAAAAAAAAAAAAAGAATTAAATGGGAGAAGTAGAAAAGACATGCGCAGAGGTTGAGAGTGGAAAAAAAAAAAAAAAATAGAATTGAAGAACAGACGTGCGCGGAGGAGAAGAAGAATAGGTTGAAAAAAGAAAAAAACAATTGGAAGAAGAATAGATGTACACAGAGGAGAAGAACAGAAGAAGGAAAGAAGAAAATACATGAAGAAAAGTTGAGAAGCATCAAGTGCTTGTTGCATGAGCAACTACTAGATGCCAATATACTTCCTCATAGGATCGTGTCTAGAAAAACTAAATAGGGCTGGTTGAGCCAAATGGCAGTTTACTCCAATAAATAAAAGTGTCTGGCATGCTTAATAATCAATACTTAGATCACCCTTCTTTTAGTACCTTAGATTTCTTTTCTAGAAAATTTATCTCTATATCCCTTCTTTCTCTAACCTAGTTTAGTTATTTAAAAAAAAAGATTTTGTAATATTTTATGCGTTTAGAATGGAGTATGTTATTATTATTATTTGCCTATGATGTATCCAACATGTCGTGCCCTACTTTCTTAGAAATTGACATGTCACTGTGTTTGTGCTTAGGATATCAATATGGTGGTTCAGTAAGTAAGAATATCCTCATTTAAGCACGATGCATATTTAGTTCTTCCAAATGTAGGAAATGATTCTTGAAAACTAGGAGTCTTTGGATCAAGCTTGTTAATGGTTCTTGACTGGAACGGTTATTTCTGTGCTTGCTGGAAAATCCTTCAATTGATTTGCGAATAAGAGAGTGGTTTGGGGTGCCACAAATTTTAGGGCTATGTTTTGGTTCTTGAGAATGGAAAGATTATATTATAGCTAAACTGCCAAGGGTCCTTGGATGATATTTATGTGTGTGTATGTTTAGTCTTATTTAAAAAAATCAAAAGAAAAGAAGTATTCAAGTCTTACCTTGAATGTTTCATCTTGATGATGTATACTTTATATTTTTGTTCATTCTGGTTTCTTATGCAAGAATTAAGAAATACTTTTTAAGCTTCTTGTTAGATAGTTCCAATTCGCTAGGAGAAATGATTTTTCTAGGCAATCCTGATGTAACCTAGGATCTAGTAGAAGAACATTTGAGACTCTTTACTCAACACCGAACCCCATTATATAGGCTATCAACTAACTGAACCAAATAGAAACTATACTAATTAAAAAATTAATAACAAGCTACCTACCTAATAAAATTAGCCGCAAACTAGGGCAACTGAACTCTTAAATCCTTTCTTTTAGCTTTTCAACCGTTGATGAAAAGTTCTATTTCTTGTTTATAAAAAATAAAACCACTAATAAGTAGAACAAAAGGGGAATAAAAGTCCCCGCTCACACTATATCACATCCATAGGGAGTACAGTTCAAGCATTATTTTAAGTACACAATTCATCTGACCACTGCCCTCATCATCTCACTTTCTTTGACTGGACTGGTGGGGGGTATTTGTGTTCTCAGATTATGATGCGAAGGCTGAAGATGCAATCGACTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGATTGAAGCTGCTGGAGAGGAAGACCACTTATTGCCAAAAAAGGAATATTTTTCTGCTGAAGTTTCTTTGCCTACACTGGAGCCTACAGCTTCTGTATTTGATGATGAAGATTATGATGAGGACATTGAAAAGGTGCACGAAGTTGCAAATAGAAGCGTTGTAGCTCCAACCATCCATGCATCAGGTATCTGTCACCTTTCTCTACATTATTATCACTATAATTTCACTTACTACTAAAGGACCGTCTCATATAGCTAGAAATTTTCTATTTGTGTTTGTTTTTCCTGTCATGATGTGGTTTGTTGGATATACAACTTTCTTATATTACTGAATTGATTTTGAGTTGTAATCACTAGTTTTACTTTTACAATCATCATGTTCGATACCTTACCTTTTTATTGGTGAGAGCTTTTCTGTACATTCCTCATCTTTGTGTACACTTTAAGATGCCTTTTATTCCTGCCTAAAATTTTATTCCTAATGGTAGAGAGGAAATTTTAGTAGAGAGGAAATTTTATGGCGTACATATGGGAATTAAACGTTTTTTTAGTGAGCTTTTCTGGAATATAGTCAGTTTAGTATTTTGAAGTTGGGTTATGTTTCTTTTCTCGAATAGTTAGTTAG

mRNA sequence

ATGGGTGGCGAAACATACGGTGATTCCCAAGACGAAAGGGATGAAGATGATGATGACTATGAGGATGCTGGTGGTGGCAATCGATTATTGGGGTTTATGTTTGGGAATGTGGATAATTCTGGTGATCTTGATGCCGATTATCTTGATGAGGATGCAAAGGAACATCTGGCTGCACTGGCGGATAAGTTGGGTCCAACTTTGACAGATATTGATGTAAGAATTTTTATGATTCTGAATATCCTCTATAGTTTTCATTTGGTTTTGTGGTCTTCGTATGTAGCTTCCTGTGCAATCCTGATGGAGTACAGTTCAAGCATTATTTTAAATTATGATGCGAAGGCTGAAGATGCAATCGACTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGATTGAAGCTGCTGGAGAGGAAGACCACTTATTGCCAAAAAAGGAATATTTTTCTGCTGAAGTTTCTTTGCCTACACTGGAGCCTACAGCTTCTGTATTTGATGATGAAGATTATGATGAGGACATTGAAAAGGTGCACGAAGTTGCAAATAGAAGCGTTGTAGCTCCAACCATCCATGCATCAGTTAGTTAG

Coding sequence (CDS)

ATGGGTGGCGAAACATACGGTGATTCCCAAGACGAAAGGGATGAAGATGATGATGACTATGAGGATGCTGGTGGTGGCAATCGATTATTGGGGTTTATGTTTGGGAATGTGGATAATTCTGGTGATCTTGATGCCGATTATCTTGATGAGGATGCAAAGGAACATCTGGCTGCACTGGCGGATAAGTTGGGTCCAACTTTGACAGATATTGATGTAAGAATTTTTATGATTCTGAATATCCTCTATAGTTTTCATTTGGTTTTGTGGTCTTCGTATGTAGCTTCCTGTGCAATCCTGATGGAGTACAGTTCAAGCATTATTTTAAATTATGATGCGAAGGCTGAAGATGCAATCGACTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGATTGAAGCTGCTGGAGAGGAAGACCACTTATTGCCAAAAAAGGAATATTTTTCTGCTGAAGTTTCTTTGCCTACACTGGAGCCTACAGCTTCTGTATTTGATGATGAAGATTATGATGAGGACATTGAAAAGGTGCACGAAGTTGCAAATAGAAGCGTTGTAGCTCCAACCATCCATGCATCAGTTAGTTAG

Protein sequence

MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHASVS
Homology
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BLAST of CmoCh08G002400 vs. ExPASy Swiss-Prot
Match: Q67W65 (Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TAF1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-41
Identity = 94/161 (58.39%), Postives = 112/161 (69.57%), Query Frame = 0 

Query: 14  DEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVR 73
           D+DD+DY++ GGGN  LGFMFGNVD+SGDLDADYLDEDAKEHL ALADKLGP+L DID+ 
Sbjct: 19  DDDDEDYDEPGGGNHFLGFMFGNVDDSGDLDADYLDEDAKEHLFALADKLGPSLKDIDL- 78

Query: 74  IFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIE 133
                              +   A   + S     +YDAKAEDA+DYEDIDEEYDGPE+E
Sbjct: 79  -------------------IKPSAAPTDPSEQ---DYDAKAEDAVDYEDIDEEYDGPEVE 138

Query: 134 AAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIE 175
           AA EEDHLL KK+YFS+     ++    SVFD+E+YDED E
Sbjct: 139 AATEEDHLLSKKDYFSSNAVYASVNSKVSVFDEENYDEDEE 156

[Close]
BLAST of CmoCh08G002400 vs. ExPASy Swiss-Prot
Match: Q8LRK9 (Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana OX=3702 GN=TAF1 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.6e-39
Identity = 98/174 (56.32%), Postives = 115/174 (66.09%), Query Frame = 0 

Query: 7   GDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPT 66
           G   +   +DDD+YED   G   LGF+FGNVDNSGDLDADYLDEDAKEHL+ALADKLG +
Sbjct: 8   GSHNETSSDDDDEYEDNSRGFN-LGFIFGNVDNSGDLDADYLDEDAKEHLSALADKLGSS 67

Query: 67  LTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDYEDIDEE 126
           L DI              +L+  S   A        S     +YD KAEDA+DYEDIDEE
Sbjct: 68  LPDI--------------NLLAKSERTA--------SDPAEQDYDRKAEDAVDYEDIDEE 127

Query: 127 YDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 181
           YDGPE++   EEDHLLPKKEYFS  V+L +L+  ASVFDDEDYDE+ E+  E A
Sbjct: 128 YDGPEVQVVSEEDHLLPKKEYFSTAVALGSLKSRASVFDDEDYDEEEEQEEEQA 158

[Close]
BLAST of CmoCh08G002400 vs. ExPASy Swiss-Prot
Match: Q6PUA2 (Transcription initiation factor TFIID subunit 1b OS=Arabidopsis thaliana OX=3702 GN=TAF1B PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.3e-12
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 118 IDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDED--IEK 177
           +DY   DEEYDGPE++   EEDHLLPK+EY SA  +L  L   ASVFDDEDYDE    EK
Sbjct: 5   VDYGSNDEEYDGPELQVVTEEDHLLPKREYLSAAFALSGLNSRASVFDDEDYDEQGGQEK 64

Query: 178 VHEVANRS 184
            H    +S
Sbjct: 65  EHVPVEKS 72

[Close]
BLAST of CmoCh08G002400 vs. ExPASy TrEMBL
Match: A0A6J1H5J5 (transcription initiation factor TFIID subunit 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460758 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.5e-74
Identity = 159/192 (82.81%), Postives = 161/192 (83.85%), Query Frame = 0 

Query: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60
           MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA
Sbjct: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60

Query: 61  DKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDY 120
           DKLGPTLTDID              L   S  + S AI  +        YDAKAEDAIDY
Sbjct: 61  DKLGPTLTDID--------------LSTKSPKIPSDAIEPD--------YDAKAEDAIDY 120

Query: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 180
           EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA
Sbjct: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 170

Query: 181 NRSVVAPTIHAS 193
           NRSVVAPTIHAS
Sbjct: 181 NRSVVAPTIHAS 170

[Close]
BLAST of CmoCh08G002400 vs. ExPASy TrEMBL
Match: A0A6J1L0S9 (transcription initiation factor TFIID subunit 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498075 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.9e-73
Identity = 157/192 (81.77%), Postives = 160/192 (83.33%), Query Frame = 0 

Query: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60
           MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA
Sbjct: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60

Query: 61  DKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDY 120
           DKLG TLTDID              L   S  + S A+  +        YDAKAEDAIDY
Sbjct: 61  DKLGSTLTDID--------------LSTKSPKIPSDAVEPD--------YDAKAEDAIDY 120

Query: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 180
           EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA
Sbjct: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 170

Query: 181 NRSVVAPTIHAS 193
           NRSVVAPTIHAS
Sbjct: 181 NRSVVAPTIHAS 170

[Close]
BLAST of CmoCh08G002400 vs. ExPASy TrEMBL
Match: A0A0A0KA05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G357030 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.5e-64
Identity = 142/192 (73.96%), Postives = 149/192 (77.60%), Query Frame = 0 

Query: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60
           MGGETYGDS DERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALA
Sbjct: 1   MGGETYGDSPDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALA 60

Query: 61  DKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDY 120
           DKLGPTLTDID              L   SS + S A+  +        YDAKAEDA+DY
Sbjct: 61  DKLGPTLTDID--------------LSTKSSRIQSDAVEPD--------YDAKAEDAVDY 120

Query: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 180
           EDIDEEYDGPEIEAAGEEDHLLP++EYFSAEVSL TLEPTASVFDDEDYDED E V +V 
Sbjct: 121 EDIDEEYDGPEIEAAGEEDHLLPRREYFSAEVSLSTLEPTASVFDDEDYDEDFENVPDVV 170

Query: 181 NRSVVAPTIHAS 193
           N SV    IHAS
Sbjct: 181 NNSVEPQIIHAS 170

[Close]
BLAST of CmoCh08G002400 vs. ExPASy TrEMBL
Match: A0A1S3C886 (transcription initiation factor TFIID subunit 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497604 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 5.7e-64
Identity = 140/192 (72.92%), Postives = 148/192 (77.08%), Query Frame = 0 

Query: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60
           MGGETYGDS DERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALA
Sbjct: 1   MGGETYGDSPDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALA 60

Query: 61  DKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDY 120
           DKLGPTLTDID              L   SS + S A+  +        YDAKAEDA+DY
Sbjct: 61  DKLGPTLTDID--------------LSTKSSKIQSDAVEPD--------YDAKAEDAVDY 120

Query: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 180
           EDIDEEYDGPEIEA GEEDHLLP++EYFSAEVSL TLEPTA VFDDEDYDED EKV ++ 
Sbjct: 121 EDIDEEYDGPEIEAVGEEDHLLPRREYFSAEVSLATLEPTAPVFDDEDYDEDFEKVPDIV 170

Query: 181 NRSVVAPTIHAS 193
           N SV    IHAS
Sbjct: 181 NNSVEPQIIHAS 170

[Close]
BLAST of CmoCh08G002400 vs. ExPASy TrEMBL
Match: A0A5A7SLH8 (Transcription initiation factor TFIID subunit 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00640 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 5.7e-64
Identity = 140/192 (72.92%), Postives = 148/192 (77.08%), Query Frame = 0 

Query: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60
           MGGETYGDS DERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALA
Sbjct: 1   MGGETYGDSPDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALA 60

Query: 61  DKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDY 120
           DKLGPTLTDID              L   SS + S A+  +        YDAKAEDA+DY
Sbjct: 61  DKLGPTLTDID--------------LSTKSSKIQSDAVEPD--------YDAKAEDAVDY 120

Query: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 180
           EDIDEEYDGPEIEA GEEDHLLP++EYFSAEVSL TLEPTA VFDDEDYDED EKV ++ 
Sbjct: 121 EDIDEEYDGPEIEAVGEEDHLLPRREYFSAEVSLATLEPTAPVFDDEDYDEDFEKVPDIV 170

Query: 181 NRSVVAPTIHAS 193
           N SV    IHAS
Sbjct: 181 NNSVEPQIIHAS 170

[Close]
BLAST of CmoCh08G002400 vs. NCBI nr
Match: KAG7025432.1 (Transcription initiation factor TFIID subunit 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.7 bits (735), Expect = 7.3e-74
Identity = 159/192 (82.81%), Postives = 161/192 (83.85%), Query Frame = 0 

Query: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60
           MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA
Sbjct: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60

Query: 61  DKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDY 120
           DKLGPTLTDID              L   S  + S AI  +        YDAKAEDAIDY
Sbjct: 61  DKLGPTLTDID--------------LSTKSPKIPSDAIEPD--------YDAKAEDAIDY 120

Query: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 180
           EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA
Sbjct: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 170

Query: 181 NRSVVAPTIHAS 193
           NRSVVAPTIHAS
Sbjct: 181 NRSVVAPTIHAS 170

[Close]
BLAST of CmoCh08G002400 vs. NCBI nr
Match: XP_022959797.1 (transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata] >XP_022959798.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata] >XP_022959799.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata] >XP_022959800.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 287.7 bits (735), Expect = 7.3e-74
Identity = 159/192 (82.81%), Postives = 161/192 (83.85%), Query Frame = 0 

Query: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60
           MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA
Sbjct: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60

Query: 61  DKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDY 120
           DKLGPTLTDID              L   S  + S AI  +        YDAKAEDAIDY
Sbjct: 61  DKLGPTLTDID--------------LSTKSPKIPSDAIEPD--------YDAKAEDAIDY 120

Query: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 180
           EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA
Sbjct: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 170

Query: 181 NRSVVAPTIHAS 193
           NRSVVAPTIHAS
Sbjct: 181 NRSVVAPTIHAS 170

[Close]
BLAST of CmoCh08G002400 vs. NCBI nr
Match: KAG6593022.1 (Transcription initiation factor TFIID subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286.2 bits (731), Expect = 2.1e-73
Identity = 158/192 (82.29%), Postives = 160/192 (83.33%), Query Frame = 0 

Query: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60
           MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA
Sbjct: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60

Query: 61  DKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDY 120
           DKLGPTLTDID              L   S  + S AI  +        YDAKAEDAIDY
Sbjct: 61  DKLGPTLTDID--------------LSTKSPKIPSDAIEPD--------YDAKAEDAIDY 120

Query: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 180
           EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA
Sbjct: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 170

Query: 181 NRSVVAPTIHAS 193
           NRSVVAPTIH S
Sbjct: 181 NRSVVAPTIHVS 170

[Close]
BLAST of CmoCh08G002400 vs. NCBI nr
Match: XP_023004897.1 (transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima] >XP_023004898.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima] >XP_023004899.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima] >XP_023004900.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 284.3 bits (726), Expect = 8.1e-73
Identity = 157/192 (81.77%), Postives = 160/192 (83.33%), Query Frame = 0 

Query: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60
           MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA
Sbjct: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60

Query: 61  DKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDY 120
           DKLG TLTDID              L   S  + S A+  +        YDAKAEDAIDY
Sbjct: 61  DKLGSTLTDID--------------LSTKSPKIPSDAVEPD--------YDAKAEDAIDY 120

Query: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 180
           EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA
Sbjct: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 170

Query: 181 NRSVVAPTIHAS 193
           NRSVVAPTIHAS
Sbjct: 181 NRSVVAPTIHAS 170

[Close]
BLAST of CmoCh08G002400 vs. NCBI nr
Match: XP_023513701.1 (transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo] >XP_023513702.1 transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo] >XP_023513703.1 transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo] >XP_023513704.1 transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-72
Identity = 155/192 (80.73%), Postives = 161/192 (83.85%), Query Frame = 0 

Query: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60
           MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA
Sbjct: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60

Query: 61  DKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDY 120
           DKLGPTLTDID              L   S  + S A+  +        YDAKAEDAIDY
Sbjct: 61  DKLGPTLTDID--------------LSTKSPKIPSDAVEPD--------YDAKAEDAIDY 120

Query: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 180
           EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTAS+FDDEDYDEDIEKVHEVA
Sbjct: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASLFDDEDYDEDIEKVHEVA 170

Query: 181 NRSVVAPTIHAS 193
           NRSVVAP+IHA+
Sbjct: 181 NRSVVAPSIHAA 170

[Close]
BLAST of CmoCh08G002400 vs. TAIR 10
Match: AT1G32750.1 (HAC13 protein (HAC13) )

HSP 1 Score: 162.9 bits (411), Expect = 2.5e-40
Identity = 98/174 (56.32%), Postives = 115/174 (66.09%), Query Frame = 0 

Query: 7   GDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPT 66
           G   +   +DDD+YED   G   LGF+FGNVDNSGDLDADYLDEDAKEHL+ALADKLG +
Sbjct: 8   GSHNETSSDDDDEYEDNSRGFN-LGFIFGNVDNSGDLDADYLDEDAKEHLSALADKLGSS 67

Query: 67  LTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDYEDIDEE 126
           L DI              +L+  S   A        S     +YD KAEDA+DYEDIDEE
Sbjct: 68  LPDI--------------NLLAKSERTA--------SDPAEQDYDRKAEDAVDYEDIDEE 127

Query: 127 YDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 181
           YDGPE++   EEDHLLPKKEYFS  V+L +L+  ASVFDDEDYDE+ E+  E A
Sbjct: 128 YDGPEVQVVSEEDHLLPKKEYFSTAVALGSLKSRASVFDDEDYDEEEEQEEEQA 158

[Close]
BLAST of CmoCh08G002400 vs. TAIR 10
Match: AT3G19040.1 (histone acetyltransferase of the TAFII250 family 2 )

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-13
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 118 IDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDED--IEK 177
           +DY   DEEYDGPE++   EEDHLLPK+EY SA  +L  L   ASVFDDEDYDE    EK
Sbjct: 5   VDYGSNDEEYDGPELQVVTEEDHLLPKREYLSAAFALSGLNSRASVFDDEDYDEQGGQEK 64

Query: 178 VHEVANRS 184
            H    +S
Sbjct: 65  EHVPVEKS 72

The following BLAST results are available for this feature:
BLAST of CmoCh08G002400 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q67W651.0e-4158.39Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica ... [more]
Q8LRK93.6e-3956.32Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana OX=3702 ... [more]
Q6PUA28.3e-1257.35Transcription initiation factor TFIID subunit 1b OS=Arabidopsis thaliana OX=3702... [more]
BLAST of CmoCh08G002400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H5J53.5e-7482.81transcription initiation factor TFIID subunit 1 isoform X1 OS=Cucurbita moschata... [more]
A0A6J1L0S93.9e-7381.77transcription initiation factor TFIID subunit 1 isoform X1 OS=Cucurbita maxima O... [more]
A0A0A0KA051.5e-6473.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G357030 PE=3 SV=1[more]
A0A1S3C8865.7e-6472.92transcription initiation factor TFIID subunit 1 isoform X1 OS=Cucumis melo OX=36... [more]
A0A5A7SLH85.7e-6472.92Transcription initiation factor TFIID subunit 1 isoform X1 OS=Cucumis melo var. ... [more]
BLAST of CmoCh08G002400 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025432.17.3e-7482.81Transcription initiation factor TFIID subunit 1 [Cucurbita argyrosperma subsp. a... [more]
XP_022959797.17.3e-7482.81transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata] ... [more]
KAG6593022.12.1e-7382.29Transcription initiation factor TFIID subunit 1, partial [Cucurbita argyrosperma... [more]
XP_023004897.18.1e-7381.77transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima] >X... [more]
XP_023513701.11.4e-7280.73transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo] >XP... [more]
BLAST of CmoCh08G002400 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G32750.12.5e-4056.32HAC13 protein (HAC13) [more]
AT3G19040.15.9e-1357.35histone acetyltransferase of the TAFII250 family 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036741TAFII-230 TBP-binding domain superfamilyGENE3D1.10.1100.10coord: 17..67
e-value: 5.6E-7
score: 31.7
IPR036741TAFII-230 TBP-binding domain superfamilySUPERFAMILY47055TAF(II)230 TBP-binding fragmentcoord: 22..61
IPR009067TAFII-230 TBP-bindingPFAMPF09247TBP-bindingcoord: 17..60
e-value: 2.1E-11
score: 43.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
IPR040240Transcription initiation factor TFIID subunit 1PANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 13..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G002400.1CmoCh08G002400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051123 RNA polymerase II preinitiation complex assembly
cellular_component GO:0005669 transcription factor TFIID complex
molecular_function GO:0016251 RNA polymerase II general transcription initiation factor activity
molecular_function GO:0017025 TBP-class protein binding