CmoCh08G002300 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G002300
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionWound-induced basic
LocationCmo_Chr08: 1385229 .. 1388756 (-)
RNA-Seq ExpressionCmoCh08G002300
SyntenyCmoCh08G002300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTTCTATAAAAGCTGAAGCATTCGTGTTCGGCGCCTGTTCGCGGCATTTGCGATTGGGATTTTATTCAAAAGCTTAGACGCGCAGCAAATTAGGGTTTCGATCTGTGAAGGCTCAAAATTCATCACCGAGATCGATCATGATTTACGACGTTAACTCCTCTCTCTTCCGCTCCTTCCTCAGCCAGAAAGGAGGCTCTTCCGACAGGTGGTATTCTCCTCTATTTTAACACTCTATTGTTGTGTTCTTGTATCAATCGCACGAGTGCTAGAATTCTGCATCTTTCTTAGTAGGTTGGGATTTGAATGCACCTATCTAAGAGAATTTTAGAGTTTGTTAGAGTTTTCGAGACAAGTTTGTAAGAATACTAGAAACTATTCATTTGGAGCTTTATCTTTCATTTTTAGAAATTAGAAATTATGTTTGATACTCACTCTTAAATTATAATTTGAAAGATTTTTAAACTTCGTCGATGTAAATGTAATGGACATATTGTAATGATCATGGTTGATCGATGAAGACTGGATTCTTGTTCATTGCAAATTTTGGGGCATGTTGTCTGAATTATTATTTTTTTGGCTACTCCATTTAGAAATTTTTAAGAATTCCCCTTAGTCAACAACTTCACAATCAACTTTGTTGTGTATATAAATTCTACGTCGGGTAAAGAAAGTGCTTTGTCTTCTCGTTGTCTTCAACTCCTAAAATATTCGGTTTGTGATCATAAGCATAAGATCTAGTTTGAAGTGCTTCTTTAATCATCAAGAGAACTTGTCTAATGATTTTTTGTGTAGCCTACCTGCTTGTCATCTCTCTCTCTTCCATTCTTGAGCCTGAAACTTCTAATCTGTTTTCAGAAGGTTTGGGGATCTGAAAATGCATTAAAGTAACACTCTTTAGATGGATGGTTTCTTTTAAGAGGGATGGAGAAGACGTAGGAGGAGACGTGGGAGTTTGTGAGGTTTAATGCATCTTTGTAGGCATCTGTTAAATGGACAATTTTGTAATTATCAGCTTGGTGTCATTCTTTTGGATTGCAGTCCATTCCTGTAGCTAGTTGCCTAGTTGATGAGGACTCTTTTTGTTGACTTGTTTTTGTATGACCTTGTTATTTCTTTCATTTATCTCAAAGAAAGCTTGGTGTCTTACCCCCCAGAAAAAGAGAGAGTCAAAACTGTCAAACTTGGGATTTGATCTTTTCTCATGCCGAGTTTCCTTGTCTTGTTGTTTTTTATGCTACCTTTTGTTTCTTAATTTTGCGATAAATTTCACCATTTTCTTGTTAATCTTCTTTTTCTGTAATACTTAGTTTGGAATGATAGACTCGCTACATAATTAACTTGGAAACCTATTCGTTCTGTCTGACTGAGCTTCAAGTCAACCTCAATTTAATCTTCGGGCTTTTGTGGTTGCAATGCAACCATGTAATTAAATCTTGAATGTGAAGCACATACATTTGAGCTTGGATAGTGTATCAATGTCCAACATATATTTGGCACACTTCAACACCTATTGAACACATGTCAGAGGCTTTTTATGGACGTGCCAAACATTTATTAAACATGATGGACATGTATTAAGGTGAACAATTGTCAGACGTGTAGAAGGACACTTGTATTTAAGTCTTGTGGCATTTTTTTTAAATGGACTTTAAAAAATGTACATGAGATAAGAAGTATTTGACTTGTTTTCTAAGGCATATGAATGCATATGCATTATTGACTTTAAACTTAACGTAGAAAAATGTTGGGTTAGGTTTTGTTTATGAATGTTTTCTTGTAAATTACTACATGATCAGAAGTTGGTGATTAGTTTCTTCAACCTTTGTAACCATTGCACATTTACAATTATTATTGGAAAATCGACAAAAATGTGGACTTATTTACAACTTGCTGAATGATACAAAGCGTTGAACCATTTTTCTTTCAGTTCTTATTGAAATCCATCCATTGATCCTGAAATATTTTTTTTCCATTCTTTATATCCCTTGATGTGCCGTAATTTGTTGCATTACCTAGCTTAGAAACTGGTGTTTTTTCTACATGCTTCTTGTGCCACGTAAGCTTCTCTTGAGATTTGACCTGATGAGAGTGAGGTTAAGGGCTTATGATGTTCTTCAGCGTTTAATCTTTGTCTGAATTGAATGGTTTAGGAAAATGGAGCAGAAGCCGAAAGAACAGAGACCAAAAGCCAGTGAGAATAAGCCTGTTATGTCAGAATGAGAATGAGTTGTTTAAATCCTTACCGATTCTCTTCCGTTTTAGTAAAGTTCTTAAAAATTAAACACAAAAATGGAGTTTGGTTGAAGTTGTAGAATAGACAGATTCCATGGACTTGACCTCAAATAGTTCAAATTGCAACTGGAGCACAGGCTTGGCTTCTTAGTTAACAATTAAAGGGCAGGGTGGAACCTTTAACTTTAAGTAAGGTAGTTGATGTCTTATCTAAGATGAGTTGACTCTTTGAGGTATTATTGCTTAGATGTTTCAACTTTCGTGCAGGTGGGTGTCAAAGCAAGTGATGAAAAAGAAGTGAAGACCAAAGAGTTTAGAGGTCAACTGATCTGACTCCCAAAAGTTGTGTCGACAAAGCTCGCTCTCCATCGTCTATCTAGCAATGGAGGATGGAGGAAGGAAGTTGTTCTGGCGAGCGAGACTAAGAAAGAAAGGGGAGAGAGTTTGAGCCATACAATTTTGACACCAGAAAGGCAGAAACTTTTGCCCCAATTCGAAAGGTGGACAATCTCTTTTATCTTATCTCCATCTGCAATATTTATTACTTCCAAAACTGATATGTCATTCATTTATTACTTTCAGAAATTTATCTATGGATGCTATTTTGTGCCCTCTCTTTTCTTCTTGGGGTGTGCTGCCAAAGTTGGGTTAGGGATGTCATGTCAATCACCATATTTTCGAGTTTGTTCCTAAGTTCCTCAACCTGACCAACCCGACTAGAGTGGTTAACCCAATCCGACCCATTCCATCCCTCGTATCACGAAATTGGGTCTTGGGGTTTAACACTTTTGACTCAACAAATTTTAATGGTGAGGCAAGGCAAGATGACTCACAATTGGATTAAAGCAGAGATGCCCATGTGATGGGGAAAGATTTAAATATACTTGTTTTAAATAATGTTATAAAATATCCTAAGACAAAAAATAATACTCTACAATCAAAAAGTTCAACCAACATAATATCAAAAAAATTCAAAATTTAATATCACTACATGGGTCGTCAACAACTTATTTACTATAACAACAACAATAATAAAAGATAAGTGAATAATTGGGGTGGGGTGGGGCGTGGACATGGACATGGACATGGACATGGAGGAGGAATAAAGTTTTCGTCCCCATCCCAATCTAGTAAACTCTCCTCGCTCCCTCCCCTGTACATCAAAATATTTTTTTAATATATCATAAAAATTTAAACACTATACAAAATTATTAAACACATCTTTAAAACCAACTCAAATTTACTCCTTTATTGGAGTGTTCATGAAAGTTCAGAAACTAAAATGAAATTTCAC

mRNA sequence

TGGTTCTATAAAAGCTGAAGCATTCGTGTTCGGCGCCTGTTCGCGGCATTTGCGATTGGGATTTTATTCAAAAGCTTAGACGCGCAGCAAATTAGGGTTTCGATCTGTGAAGGCTCAAAATTCATCACCGAGATCGATCATGATTTACGACGTTAACTCCTCTCTCTTCCGCTCCTTCCTCAGCCAGAAAGGAGGCTCTTCCGACAGGAAAATGGAGCAGAAGCCGAAAGAACAGAGACCAAAAGCCAGTGAGAATAAGCCTGTTATGGTGGAACCTTTAACTTTAAGTAAGGTGGGTGTCAAAGCAAGTGATGAAAAAGAAGTGAAGACCAAAGAGTTTAGAGGTCAACTGATCTGACTCCCAAAAGTTGTGTCGACAAAGCTCGCTCTCCATCGTCTATCTAGCAATGGAGGATGGAGGAAGGAAGTTGTTCTGGCGAGCGAGACTAAGAAAGAAAGGGGAGAGAGTTTGAGCCATACAATTTTGACACCAGAAAGGCAGAAACTTTTGCCCCAATTCGAAAGGTGGACAATCTCTTTTATCTTATCTCCATCTGCAATATTTATTACTTCCAAAACTGATATGTCATTCATTTATTACTTTCAGAAATTTATCTATGGATGCTATTTTGTGCCCTCTCTTTTCTTCTTGGGGTGTGCTGCCAAAGTTGGGTTAGGGATGTCATGTCAATCACCATATTTTCGAGTTTGTTCCTAAGTTCCTCAACCTGACCAACCCGACTAGAGTGGTTAACCCAATCCGACCCATTCCATCCCTCGTATCACGAAATTGGGTCTTGGGGTTTAACACTTTTGACTCAACAAATTTTAATGGTGAGGCAAGGCAAGATGACTCACAATTGGATTAAAGCAGAGATGCCCATGTGATGGGGAAAGATTTAAATATACTTGTTTTAAATAATGTTATAAAATATCCTAAGACAAAAAATAATACTCTACAATCAAAAAGTTCAACCAACATAATATCAAAAAAATTCAAAATTTAATATCACTACATGGGTCGTCAACAACTTATTTACTATAACAACAACAATAATAAAAGATAAGTGAATAATTGGGGTGGGGTGGGGCGTGGACATGGACATGGACATGGACATGGAGGAGGAATAAAGTTTTCGTCCCCATCCCAATCTAGTAAACTCTCCTCGCTCCCTCCCCTGTACATCAAAATATTTTTTTAATATATCATAAAAATTTAAACACTATACAAAATTATTAAACACATCTTTAAAACCAACTCAAATTTACTCCTTTATTGGAGTGTTCATGAAAGTTCAGAAACTAAAATGAAATTTCAC

Coding sequence (CDS)

ATGATTTACGACGTTAACTCCTCTCTCTTCCGCTCCTTCCTCAGCCAGAAAGGAGGCTCTTCCGACAGGAAAATGGAGCAGAAGCCGAAAGAACAGAGACCAAAAGCCAGTGAGAATAAGCCTGTTATGGTGGAACCTTTAACTTTAAGTAAGGTGGGTGTCAAAGCAAGTGATGAAAAAGAAGTGAAGACCAAAGAGTTTAGAGGTCAACTGATCTGA

Protein sequence

MIYDVNSSLFRSFLSQKGGSSDRKMEQKPKEQRPKASENKPVMVEPLTLSKVGVKASDEKEVKTKEFRGQLI
Homology
BLAST of CmoCh08G002300 vs. ExPASy Swiss-Prot
Match: Q09020 (Wound-induced basic protein OS=Phaseolus vulgaris OX=3885 GN=PR4 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.0e-12
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1  MIYDVNSSLFRSFLSQKGGSSDRKM--EQKPKEQRPKASENKPVMVE 46
          MIYDVNS LFRSFLSQKGGSSD++   EQKPKE RPKASENKP+M E
Sbjct: 1  MIYDVNSPLFRSFLSQKGGSSDKRKTEEQKPKEHRPKASENKPIMTE 47

BLAST of CmoCh08G002300 vs. ExPASy TrEMBL
Match: A0A6J1H6H7 (wound-induced basic protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460896 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.2e-12
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0

Query: 1  MIYDVNSSLFRSFLSQKGGSSDR-KMEQKPKEQRPKASENKPVMVE 46
          MIYDVNSSLFRSFLSQKGGSSDR KMEQKPKEQRPKASENKPVM E
Sbjct: 1  MIYDVNSSLFRSFLSQKGGSSDRWKMEQKPKEQRPKASENKPVMSE 46

BLAST of CmoCh08G002300 vs. ExPASy TrEMBL
Match: A0A0B0NB31 (Wound-induced basic OS=Gossypium arboreum OX=29729 GN=LOC108471243 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-10
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0

Query: 1  MIYDVNSSLFRSFLSQKGGSSDRKM-EQKPKEQRPKASENKPVMVE 46
          MIYDVNS+LFRSFLSQKGGS  RKM EQKPKEQRPKASENKPVM E
Sbjct: 1  MIYDVNSALFRSFLSQKGGSDKRKMEEQKPKEQRPKASENKPVMTE 46

BLAST of CmoCh08G002300 vs. ExPASy TrEMBL
Match: A0A6J0ZH14 (wound-induced basic protein OS=Herrania umbratica OX=108875 GN=LOC110409230 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-10
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0

Query: 1  MIYDVNSSLFRSFLSQKGGSSD-RKM-EQKPKEQRPKASENKPVMVE 46
          MIYDVNS LFRSFLSQKGGSSD RKM EQKPKEQRPKASENKPVM E
Sbjct: 1  MIYDVNSPLFRSFLSQKGGSSDKRKMEEQKPKEQRPKASENKPVMTE 47

BLAST of CmoCh08G002300 vs. ExPASy TrEMBL
Match: A0A5D2IPP2 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D11G158700v1 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-10
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0

Query: 1  MIYDVNSSLFRSFLSQKGGSSD-RKM-EQKPKEQRPKASENKPVMVE 46
          MIYDVNS LFRSFLSQKGGSSD RKM EQKPKEQRPKASENKPVM E
Sbjct: 1  MIYDVNSPLFRSFLSQKGGSSDKRKMEEQKPKEQRPKASENKPVMTE 47

BLAST of CmoCh08G002300 vs. ExPASy TrEMBL
Match: A0A1U8K154 (wound-induced basic protein OS=Gossypium hirsutum OX=3635 GN=LOC107912552 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-10
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0

Query: 1  MIYDVNSSLFRSFLSQKGGSSD-RKM-EQKPKEQRPKASENKPVMVE 46
          MIYDVNS LFRSFLSQKGGSSD RKM EQKPKEQRPKASENKPVM E
Sbjct: 1  MIYDVNSPLFRSFLSQKGGSSDKRKMEEQKPKEQRPKASENKPVMTE 47

BLAST of CmoCh08G002300 vs. NCBI nr
Match: KAG7025423.1 (Wound-induced basic protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-19
Identity = 58/72 (80.56%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 1   MIYDVNSSLFRSFLSQKGGSSDRKMEQKPKEQRPKASENKPVMVEPLTLSKVGVKASDEK 60
           MIYDVNSSLFRSFLSQKGGSSDRKMEQKPKEQRPKASENKP          VGVKASDE+
Sbjct: 54  MIYDVNSSLFRSFLSQKGGSSDRKMEQKPKEQRPKASENKP----------VGVKASDER 113

Query: 61  EVKTKEFRGQLI 73
           EVKT++FRG+LI
Sbjct: 114 EVKTEQFRGRLI 115

BLAST of CmoCh08G002300 vs. NCBI nr
Match: XP_022960021.1 (wound-induced basic protein-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 80.1 bits (196), Expect = 8.6e-12
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0

Query: 1  MIYDVNSSLFRSFLSQKGGSSDR-KMEQKPKEQRPKASENKPVMVE 46
          MIYDVNSSLFRSFLSQKGGSSDR KMEQKPKEQRPKASENKPVM E
Sbjct: 1  MIYDVNSSLFRSFLSQKGGSSDRWKMEQKPKEQRPKASENKPVMSE 46

BLAST of CmoCh08G002300 vs. NCBI nr
Match: XP_017628362.1 (PREDICTED: wound-induced basic protein [Gossypium arboreum] >KHG08251.1 Wound-induced basic [Gossypium arboreum])

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-10
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0

Query: 1  MIYDVNSSLFRSFLSQKGGSSDRKM-EQKPKEQRPKASENKPVMVE 46
          MIYDVNS+LFRSFLSQKGGS  RKM EQKPKEQRPKASENKPVM E
Sbjct: 1  MIYDVNSALFRSFLSQKGGSDKRKMEEQKPKEQRPKASENKPVMTE 46

BLAST of CmoCh08G002300 vs. NCBI nr
Match: XP_007049698.2 (PREDICTED: wound-induced basic protein [Theobroma cacao] >XP_012085053.1 wound-induced basic protein [Jatropha curcas] >XP_012490881.1 PREDICTED: wound-induced basic protein [Gossypium raimondii] >XP_016696261.1 wound-induced basic protein [Gossypium hirsutum] >XP_021274181.1 wound-induced basic protein [Herrania umbratica] >XP_021900953.1 wound-induced basic protein [Carica papaya] >KAB2003763.1 hypothetical protein ES319_D11G152600v1 [Gossypium barbadense] >TYG45280.1 hypothetical protein ES288_D11G160900v1 [Gossypium darwinii] >TYH43926.1 hypothetical protein ES332_D11G158700v1 [Gossypium tomentosum] >TYI55661.1 hypothetical protein E1A91_D11G156200v1 [Gossypium mustelinum] >KAG4120480.1 hypothetical protein ERO13_D11G145833v2 [Gossypium hirsutum])

HSP 1 Score: 74.3 bits (181), Expect = 4.7e-10
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0

Query: 1  MIYDVNSSLFRSFLSQKGGSSD-RKM-EQKPKEQRPKASENKPVMVE 46
          MIYDVNS LFRSFLSQKGGSSD RKM EQKPKEQRPKASENKPVM E
Sbjct: 1  MIYDVNSPLFRSFLSQKGGSSDKRKMEEQKPKEQRPKASENKPVMTE 47

BLAST of CmoCh08G002300 vs. NCBI nr
Match: XP_023893016.1 (wound-induced basic protein [Quercus suber] >XP_030937025.1 wound-induced basic protein [Quercus lobata] >XP_030937032.1 wound-induced basic protein [Quercus lobata] >XP_040991672.1 wound-induced basic protein [Juglans microcarpa x Juglans regia] >XP_042957042.1 wound-induced basic protein [Carya illinoinensis] >KAG2672574.1 hypothetical protein I3760_13G047600 [Carya illinoinensis] >KAG6630850.1 hypothetical protein CIPAW_13G048900 [Carya illinoinensis] >KAG6680578.1 hypothetical protein I3842_13G048800 [Carya illinoinensis] >KAG7949056.1 hypothetical protein I3843_13G040500 [Carya illinoinensis])

HSP 1 Score: 73.9 bits (180), Expect = 6.2e-10
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0

Query: 1  MIYDVNSSLFRSFLSQKGGSSD-RKM-EQKPKEQRPKASENKPVMVE 46
          MIYDVNS LFRSFLSQKGGSSD RKM EQKPKEQRPKASENKP+M E
Sbjct: 1  MIYDVNSPLFRSFLSQKGGSSDKRKMEEQKPKEQRPKASENKPIMTE 47

BLAST of CmoCh08G002300 vs. TAIR 10
Match: AT3G07230.1 (wound-responsive protein-related )

HSP 1 Score: 70.5 bits (171), Expect = 6.3e-13
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0

Query: 1  MIYDVNSSLFRSFLSQKGGSSD-RKMEQKPKEQRPKASENKPVMVE 46
          MIYDVNS LFRSFLSQKG SSD RKME KP+EQ+PKAS+NKPVM E
Sbjct: 1  MIYDVNSGLFRSFLSQKGSSSDKRKMEDKPREQKPKASDNKPVMNE 46

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q090204.0e-1280.85Wound-induced basic protein OS=Phaseolus vulgaris OX=3885 GN=PR4 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1H6H74.2e-1295.65wound-induced basic protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A0B0NB311.0e-1089.13Wound-induced basic OS=Gossypium arboreum OX=29729 GN=LOC108471243 PE=4 SV=1[more]
A0A6J0ZH142.3e-1091.49wound-induced basic protein OS=Herrania umbratica OX=108875 GN=LOC110409230 PE=4... [more]
A0A5D2IPP22.3e-1091.49Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D11G158700v1 P... [more]
A0A1U8K1542.3e-1091.49wound-induced basic protein OS=Gossypium hirsutum OX=3635 GN=LOC107912552 PE=4 S... [more]
Match NameE-valueIdentityDescription
KAG7025423.11.9e-1980.56Wound-induced basic protein, partial [Cucurbita argyrosperma subsp. argyrosperma... [more]
XP_022960021.18.6e-1295.65wound-induced basic protein-like isoform X2 [Cucurbita moschata][more]
XP_017628362.12.1e-1089.13PREDICTED: wound-induced basic protein [Gossypium arboreum] >KHG08251.1 Wound-in... [more]
XP_007049698.24.7e-1091.49PREDICTED: wound-induced basic protein [Theobroma cacao] >XP_012085053.1 wound-i... [more]
XP_023893016.16.2e-1089.36wound-induced basic protein [Quercus suber] >XP_030937025.1 wound-induced basic ... [more]
Match NameE-valueIdentityDescription
AT3G07230.16.3e-1382.61wound-responsive protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012643Wound-inducible basicPFAMPF08186Wound_indcoord: 1..44
e-value: 1.1E-18
score: 67.3
IPR012643Wound-inducible basicPANTHERPTHR36752OS12G0405700 PROTEINcoord: 1..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G002300.1CmoCh08G002300.1mRNA