CmoCh08G001950 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G001950
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein SHORT-ROOT-like
Location	Cmo_Chr08: 1140287 .. 1141863 (+)
RNA-Seq Expression	CmoCh08G001950
Synteny	CmoCh08G001950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATAACCCTTTTCACAGCCAAAGAAGCCCCCACAATCTTTTTCAGCGAAAGCCATGATCATCGTCATTGTCATCGTCTTCATCGTGTTCGGTTCCCCAATTTAGCCATGCAAAGCTCCATCAGCCAGTCGTCGAAGTACTCACTCGACCACTCTCCGCCCGCCGCTGCTGGAAAATGGGCGTCCACCCTTCTCAACGACTGCGCTCGAGCTATCTCCGACAAAGACTCCAACAAAATCCACCATCTTCTTTGGATGTTGAACGAGCTCGCCTCCCCGTACGGTGACTCCGATCAGAAATTGGCTTATTACTTCTTGCAAGCTCTCTTTTGCAGAGCTACCGAAACCGGCCTCACTTGCTACAAAACCCTCGTCACCGTTTCCGAGAAGAATTACTCCTTCGACTCCGCTCTCAAGCTCATCCTCAAGTTTCAAGAGGTAACCGTCTAAAATTATCACTAAACTCAAAAGTTTAGCTTCGATTTATAACAAAATTAGAATACCGAAACGTTAATTCAAAAATTTAAGTTGATGGGTTATAGCAAATTTAATTTTTTTTTTCTTTAGGTAAGTCCGTGGATGACATTCGGGCACGTGGCATCGAACGGAGCAATTCTCGAGGCTCTCGAGCGAGAAACGAAGCTACATATCATCGACATAAGCGACACCCTTTGCACCCAATGGCCAACCCTATTAGAATCGCTAGCTACACGCAATGATGACACTCCACATCTCAAGCTCACGGTGGTATCAACAACAACAAAGGTGAAGTCTTTAATGATGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGCTAATGGGAGTCCCTTTCGAGTTCAATCCCATAACGAATCTTAACCAATTAAGCGACCTCGAGAACGAAGCTCTCAAAGTAGAAGAAGACGAAGCCATTGCTATAAATTGCAATGGAGCTTTAAGAACCATAAAAATCGAGGAGAGAAACGCTGTGATTTCAATGTTGAAATCGTTAAAGCCTCGAGTTTTGACAATTGTTGAAGAAGAAGCTGATTTCCTAAGCTCGAAAAATGAGTTCATGAGCTGTTTCGATGAGTGTCTTAGATTTTACACGCTCTACTTCGAGATGTTAGAAGAGAGCTTTGAAGCAACGAGCAATGAGAAATTGGGTTTGGAAAGAGAGTGTTCGAGAAACATTGTGAGGGTCTTGGGGTGTGGTAATGAAAGCGAACTCGAACGAGAGTTAACGAGCGAGAGAAGAGAAAAGGGAAAGCAATGGAGCGAAAGGCTTGAAGAACGAGGTTTTTTATCGGCTCGATTCAGTGACGATGTGATGGACGACGTTAAGGCTTTGCTCAAAAGGTACAAACCCGGTTGGGCGTTGATGCATCGGACCGGTGCTATCGACACGAACCGAGACGAAGAAGAAGGTGGTGATGATTCGAGTGGAATTTATTTGACATGGAAGGAAGTACCAATGGTGTGGATTTCAGCATGGAAACCCTAGAGGACAATTTTTTTTTTTTCTTAAGCAATGAAAATGTTAAATAAAATTGTTGCCGAAATTTGATTTTCGGATTGAATCTTTAACTATCG

mRNA sequence

ATGGACATAACCCTTTTCACAGCCAAAGAAGCCCCCACAATCTTTTTCAGCGAAAGCCATGATCATCGTCATTGTCATCGTCTTCATCGTGTTCGGTTCCCCAATTTAGCCATGCAAAGCTCCATCAGCCAGTCGTCGAAGTACTCACTCGACCACTCTCCGCCCGCCGCTGCTGGAAAATGGGCGTCCACCCTTCTCAACGACTGCGCTCGAGCTATCTCCGACAAAGACTCCAACAAAATCCACCATCTTCTTTGGATGTTGAACGAGCTCGCCTCCCCGTACGGTGACTCCGATCAGAAATTGGCTTATTACTTCTTGCAAGCTCTCTTTTGCAGAGCTACCGAAACCGGCCTCACTTGCTACAAAACCCTCGTCACCGTTTCCGAGAAGAATTACTCCTTCGACTCCGCTCTCAAGCTCATCCTCAAGTTTCAAGAGGTAAGTCCGTGGATGACATTCGGGCACGTGGCATCGAACGGAGCAATTCTCGAGGCTCTCGAGCGAGAAACGAAGCTACATATCATCGACATAAGCGACACCCTTTGCACCCAATGGCCAACCCTATTAGAATCGCTAGCTACACGCAATGATGACACTCCACATCTCAAGCTCACGGTGGTATCAACAACAACAAAGGTGAAGTCTTTAATGATGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGCTAATGGGAGTCCCTTTCGAGTTCAATCCCATAACGAATCTTAACCAATTAAGCGACCTCGAGAACGAAGCTCTCAAAGTAGAAGAAGACGAAGCCATTGCTATAAATTGCAATGGAGCTTTAAGAACCATAAAAATCGAGGAGAGAAACGCTGTGATTTCAATGTTGAAATCGTTAAAGCCTCGAGTTTTGACAATTGTTGAAGAAGAAGCTGATTTCCTAAGCTCGAAAAATGAGTTCATGAGCTGTTTCGATGAGTGTCTTAGATTTTACACGCTCTACTTCGAGATGTTAGAAGAGAGCTTTGAAGCAACGAGCAATGAGAAATTGGGTTTGGAAAGAGAGTGTTCGAGAAACATTGTGAGGGTCTTGGGGTGTGGTAATGAAAGCGAACTCGAACGAGAGTTAACGAGCGAGAGAAGAGAAAAGGGAAAGCAATGGAGCGAAAGGCTTGAAGAACGAGGTTTTTTATCGGCTCGATTCAGTGACGATGTGATGGACGACGTTAAGGCTTTGCTCAAAAGGTACAAACCCGGTTGGGCGTTGATGCATCGGACCGGTGCTATCGACACGAACCGAGACGAAGAAGAAGGTGGTGATGATTCGAGTGGAATTTATTTGACATGGAAGGAAGTACCAATGGTGTGGATTTCAGCATGGAAACCCTAGAGGACAATTTTTTTTTTTTCTTAAGCAATGAAAATGTTAAATAAAATTGTTGCCGAAATTTGATTTTCGGATTGAATCTTTAACTATCG

Coding sequence (CDS)

ATGGACATAACCCTTTTCACAGCCAAAGAAGCCCCCACAATCTTTTTCAGCGAAAGCCATGATCATCGTCATTGTCATCGTCTTCATCGTGTTCGGTTCCCCAATTTAGCCATGCAAAGCTCCATCAGCCAGTCGTCGAAGTACTCACTCGACCACTCTCCGCCCGCCGCTGCTGGAAAATGGGCGTCCACCCTTCTCAACGACTGCGCTCGAGCTATCTCCGACAAAGACTCCAACAAAATCCACCATCTTCTTTGGATGTTGAACGAGCTCGCCTCCCCGTACGGTGACTCCGATCAGAAATTGGCTTATTACTTCTTGCAAGCTCTCTTTTGCAGAGCTACCGAAACCGGCCTCACTTGCTACAAAACCCTCGTCACCGTTTCCGAGAAGAATTACTCCTTCGACTCCGCTCTCAAGCTCATCCTCAAGTTTCAAGAGGTAAGTCCGTGGATGACATTCGGGCACGTGGCATCGAACGGAGCAATTCTCGAGGCTCTCGAGCGAGAAACGAAGCTACATATCATCGACATAAGCGACACCCTTTGCACCCAATGGCCAACCCTATTAGAATCGCTAGCTACACGCAATGATGACACTCCACATCTCAAGCTCACGGTGGTATCAACAACAACAAAGGTGAAGTCTTTAATGATGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGCTAATGGGAGTCCCTTTCGAGTTCAATCCCATAACGAATCTTAACCAATTAAGCGACCTCGAGAACGAAGCTCTCAAAGTAGAAGAAGACGAAGCCATTGCTATAAATTGCAATGGAGCTTTAAGAACCATAAAAATCGAGGAGAGAAACGCTGTGATTTCAATGTTGAAATCGTTAAAGCCTCGAGTTTTGACAATTGTTGAAGAAGAAGCTGATTTCCTAAGCTCGAAAAATGAGTTCATGAGCTGTTTCGATGAGTGTCTTAGATTTTACACGCTCTACTTCGAGATGTTAGAAGAGAGCTTTGAAGCAACGAGCAATGAGAAATTGGGTTTGGAAAGAGAGTGTTCGAGAAACATTGTGAGGGTCTTGGGGTGTGGTAATGAAAGCGAACTCGAACGAGAGTTAACGAGCGAGAGAAGAGAAAAGGGAAAGCAATGGAGCGAAAGGCTTGAAGAACGAGGTTTTTTATCGGCTCGATTCAGTGACGATGTGATGGACGACGTTAAGGCTTTGCTCAAAAGGTACAAACCCGGTTGGGCGTTGATGCATCGGACCGGTGCTATCGACACGAACCGAGACGAAGAAGAAGGTGGTGATGATTCGAGTGGAATTTATTTGACATGGAAGGAAGTACCAATGGTGTGGATTTCAGCATGGAAACCCTAG

Protein sequence

MDITLFTAKEAPTIFFSESHDHRHCHRLHRVRFPNLAMQSSISQSSKYSLDHSPPAAAGKWASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLTCYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMMEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIEERNAVISMLKSLKPRVLTIVEEEADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNESELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAIDTNRDEEEGGDDSSGIYLTWKEVPMVWISAWKP

Homology

[Close]

BLAST of CmoCh08G001950 vs. ExPASy Swiss-Prot
Match: Q9SZF7 (Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 2.0e-109
Identity = 214/428 (50.00%), Postives = 288/428 (67.29%), Query Frame = 0


Query: 46  SKYSLDHSPP----AAAGKWASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQK 105
           S +S+  +PP    +A  KWA ++L + ARA SDKD+ +   +LW LNEL+SPYGD++QK
Sbjct: 123 SAFSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQK 182

Query: 106 LAYYFLQALFCRATETGLTCYKTLVT--VSEKNYSFDSALKLILKFQEVSPWMTFGHVAS 165
           LA YFLQALF R T +G  CY+T+VT   +EK  SF+S  K +LKFQEVSPW TFGHVA+
Sbjct: 183 LASYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAA 242

Query: 166 NGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKS--- 225
           NGAILEA++ E K+HI+DIS T CTQWPTLLE+LATR+DDTPHL+LT V    K  +   
Sbjct: 243 NGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQT 302

Query: 226 ----LMMEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALR 285
               +M EIG RMEKFARLMGVPF+FN I ++  LS+ +   L V+ DE +AINC GA+ 
Sbjct: 303 ASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMH 362

Query: 286 TI--KIEERNAVISMLKSLKPRVLTIVEEEADFLSSK-----NEFMSCFDECLRFYTLYF 345
            I  +   R+AVIS  + L+PR++T+VEEEAD +  +     +EF+  F ECLR++ + F
Sbjct: 363 GIASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCF 422

Query: 346 EMLEESFEATSNEKLGLERECSRNIVRVLGCGNESELERELTSERREKGKQWSERLEERG 405
           E  EESF  TSNE+L LER   R IV ++ C      E   ++ERRE  ++WS R+   G
Sbjct: 423 ESWEESFPRTSNERLMLERAAGRAIVDLVAC------EPSDSTERRETARKWSRRMRNSG 482

Query: 406 FLSARFSDDVMDDVKALLKRYKPG-WALMHRTGAIDTNRDEEEGGDDSSGIYLTWKEVPM 453
           F +  +SD+V DDV+ALL+RYK G W+++                 D++GI+L W++ P+
Sbjct: 483 FGAVGYSDEVADDVRALLRRYKEGVWSMVQ--------------CPDAAGIFLCWRDQPV 530

[Close]

BLAST of CmoCh08G001950 vs. ExPASy Swiss-Prot
Match: A2XIA8 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 2.1e-103
Identity = 205/435 (47.13%), Postives = 275/435 (63.22%), Query Frame = 0


Query: 55  PAAAGKWASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRA 114
           P+++G+WA+ LL +CARA++ +DS ++  L+WMLNELASPYGD DQKLA YFLQ LF R 
Sbjct: 181 PSSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARL 240

Query: 115 TETGLTCYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEAL------- 174
           T +G    +TL T S++N SFDS  +  LKFQE+SPW  FGHVA+NGAILE+        
Sbjct: 241 TTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEAAAAG 300

Query: 175 ------------ERETKLHIIDISDTLCTQWPTLLESLATR-NDDTPHLKLTVVSTT--- 234
                          T+LHI+D+S+T CTQWPTLLE+LATR +DDTPHL +T V  T   
Sbjct: 301 AAAASSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAP 360

Query: 235 -TKVKSLMMEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEE---DEAIAINC 294
               + +M EIGQR+EKFARLMGVPF F  + +   L+DL+  AL + E     A+A+NC
Sbjct: 361 SAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHAGDLADLDLAALDLREGGATAALAVNC 420

Query: 295 NGALRTIKIEERNAVISMLKSLKPRVLTIVEEEADFLSSKNE----------FMSCFDEC 354
             ALR +    R+A ++ L+ L+PRV+T+VEEEAD  + + +          F+  F E 
Sbjct: 421 VNALRGV-ARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEG 480

Query: 355 LRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNESELERELTSERREKGKQW 414
           LRF++ Y + LEESF  TSNE+L LER   R IV ++ C          ++ERRE    W
Sbjct: 481 LRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSC------PASQSAERRETAASW 540

Query: 415 SERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAIDTNRDEEEGGDDSSGIYL 453
           + R+   GF  A FS+DV DDV++LL+RYK GW++    GA D     +  G  ++G +L
Sbjct: 541 ARRMRSAGFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGATD-----DAAGAAAAGAFL 600

[Close]

BLAST of CmoCh08G001950 vs. ExPASy Swiss-Prot
Match: Q75I13 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 2.8e-103
Identity = 205/435 (47.13%), Postives = 275/435 (63.22%), Query Frame = 0


Query: 55  PAAAGKWASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRA 114
           P+++G+WA+ LL +CARA++ +DS ++  L+WMLNELASPYGD DQKLA YFLQ LF R 
Sbjct: 181 PSSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARL 240

Query: 115 TETGLTCYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEAL------- 174
           T +G    +TL T S++N SFDS  +  LKFQE+SPW  FGHVA+NGAILE+        
Sbjct: 241 TTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEAAAAG 300

Query: 175 ------------ERETKLHIIDISDTLCTQWPTLLESLATR-NDDTPHLKLTVVSTT--- 234
                          T+LHI+D+S+T CTQWPTLLE+LATR +DDTPHL +T V  T   
Sbjct: 301 AAASSSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAP 360

Query: 235 -TKVKSLMMEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEE---DEAIAINC 294
               + +M EIGQR+EKFARLMGVPF F  + +   L+DL+  AL + E     A+A+NC
Sbjct: 361 SAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAALAVNC 420

Query: 295 NGALRTIKIEERNAVISMLKSLKPRVLTIVEEEADFLSSKNE----------FMSCFDEC 354
             ALR +    R+A ++ L+ L+PRV+T+VEEEAD  + + +          F+  F E 
Sbjct: 421 VNALRGV-ARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEG 480

Query: 355 LRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNESELERELTSERREKGKQW 414
           LRF++ Y + LEESF  TSNE+L LER   R IV ++ C          ++ERRE    W
Sbjct: 481 LRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSC------PASQSAERRETAASW 540

Query: 415 SERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAIDTNRDEEEGGDDSSGIYL 453
           + R+   GF  A FS+DV DDV++LL+RYK GW++    GA D     +  G  ++G +L
Sbjct: 541 ARRMRSAGFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGATD-----DAAGAAAAGAFL 600

[Close]

BLAST of CmoCh08G001950 vs. ExPASy Swiss-Prot
Match: A2YN56 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 1.4e-99
Identity = 200/432 (46.30%), Postives = 272/432 (62.96%), Query Frame = 0


Query: 59  GKWASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETG 118
           G+WAS LL +CAR+++ +DS ++  L+WMLNELASPYGD +QKLA YFLQ LF R T +G
Sbjct: 189 GRWASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASG 248

Query: 119 LTCYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILE-------ALERET 178
               +TL   S++N SFDS  +  L+FQE+SPW +FGHVA+NGAILE       A   ET
Sbjct: 249 QRTLRTLAAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSET 308

Query: 179 -KLHIIDISDTLCTQWPTLLESLATRN-DDTPHLKLTVV------STTTKVKSLMMEIGQ 238
            + HI+D+S+T CTQWPTLLE+LATR+ D+TPHL +T V      + T  V+ +M EIGQ
Sbjct: 309 QRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQ 368

Query: 239 RMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEE---DEAIAINCNGALRTI---KIE 298
           RMEKFARLMGVPF F  + +   L++L+ +AL + E     A+A+NC  +LR +   +  
Sbjct: 369 RMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRAR 428

Query: 299 ERNAVISMLKSLKPRVLTIVEEEADFLSSKNE--------------FMSCFDECLRFYTL 358
            R+A  + L+ L PRV+T+VEEEAD ++S  +              F+  F E LRF++ 
Sbjct: 429 RRDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSA 488

Query: 359 YFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNESELERELTSERREKGKQWSERLEE 418
           Y + LEESF  TSNE+L LER   R IV ++ C     +      ERRE    W+ R+  
Sbjct: 489 YMDSLEESFPKTSNERLALERGAGRAIVDLVSCPASESM------ERRETAASWARRMRS 548

Query: 419 RGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAIDTNRDEEEGGDDS---SGIYLTWK 453
            GF    FS+DV DDV++LL+RY+ GW++             E G DDS   +G++L WK
Sbjct: 549 AGFSPVAFSEDVADDVRSLLRRYREGWSM------------REAGTDDSAAGAGVFLAWK 602

[Close]

BLAST of CmoCh08G001950 vs. ExPASy Swiss-Prot
Match: Q8H2X8 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2)

HSP 1 Score: 364.4 bits (934), Expect = 1.9e-99
Identity = 200/432 (46.30%), Postives = 272/432 (62.96%), Query Frame = 0


Query: 59  GKWASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETG 118
           G+WAS LL +CAR+++ +DS ++  L+WMLNELASPYGD +QKLA YFLQ LF R T +G
Sbjct: 189 GRWASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASG 248

Query: 119 LTCYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILE-------ALERET 178
               +TL   S++N SFDS  +  L+FQE+SPW +FGHVA+NGAILE       A   ET
Sbjct: 249 PRTLRTLAAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSET 308

Query: 179 -KLHIIDISDTLCTQWPTLLESLATRN-DDTPHLKLTVV------STTTKVKSLMMEIGQ 238
            + HI+D+S+T CTQWPTLLE+LATR+ D+TPHL +T V      + T  V+ +M EIGQ
Sbjct: 309 QRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQ 368

Query: 239 RMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEE---DEAIAINCNGALRTI---KIE 298
           RMEKFARLMGVPF F  + +   L++L+ +AL + E     A+A+NC  +LR +   +  
Sbjct: 369 RMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRAR 428

Query: 299 ERNAVISMLKSLKPRVLTIVEEEADFLSSKNE--------------FMSCFDECLRFYTL 358
            R+A  + L+ L PRV+T+VEEEAD ++S  +              F+  F E LRF++ 
Sbjct: 429 RRDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSA 488

Query: 359 YFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNESELERELTSERREKGKQWSERLEE 418
           Y + LEESF  TSNE+L LER   R IV ++ C     +      ERRE    W+ R+  
Sbjct: 489 YMDSLEESFPKTSNERLALERGAGRAIVDLVSCPASESM------ERRETAASWARRMRS 548

Query: 419 RGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAIDTNRDEEEGGDDS---SGIYLTWK 453
            GF    FS+DV DDV++LL+RY+ GW++             E G DDS   +G++L WK
Sbjct: 549 AGFSPVAFSEDVADDVRSLLRRYREGWSM------------REAGTDDSAAGAGVFLAWK 602

[Close]

BLAST of CmoCh08G001950 vs. ExPASy TrEMBL
Match: A0A6J1H8G1 (protein SHORT-ROOT-like OS=Cucurbita moschata OX=3662 GN=LOC111461014 PE=3 SV=1)

HSP 1 Score: 907.9 bits (2345), Expect = 1.7e-260
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0


Query: 1   MDITLFTAKEAPTIFFSESHDHRHCHRLHRVRFPNLAMQSSISQSSKYSLDHSPPAAAGK 60
           MDITLFTAKEAPTIFFSESHDHRHCHRLHRVRFPNLAMQSSISQSSKYSLDHSPPAAAGK
Sbjct: 1   MDITLFTAKEAPTIFFSESHDHRHCHRLHRVRFPNLAMQSSISQSSKYSLDHSPPAAAGK 60

Query: 61  WASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLT 120
           WASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLT
Sbjct: 61  WASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLT 120

Query: 121 CYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD 180
           CYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD
Sbjct: 121 CYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD 180

Query: 181 TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMMEIGQRMEKFARLMGVPFEFNP 240
           TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMMEIGQRMEKFARLMGVPFEFNP
Sbjct: 181 TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMMEIGQRMEKFARLMGVPFEFNP 240

Query: 241 ITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIEERNAVISMLKSLKPRVLTIVEEE 300
           ITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIEERNAVISMLKSLKPRVLTIVEEE
Sbjct: 241 ITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIEERNAVISMLKSLKPRVLTIVEEE 300

Query: 301 ADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNES 360
           ADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNES
Sbjct: 301 ADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNES 360

Query: 361 ELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAID 420
           ELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAID
Sbjct: 361 ELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAID 420

Query: 421 TNRDEEEGGDDSSGIYLTWKEVPMVWISAWKP 453
           TNRDEEEGGDDSSGIYLTWKEVPMVWISAWKP
Sbjct: 421 TNRDEEEGGDDSSGIYLTWKEVPMVWISAWKP 452

[Close]

BLAST of CmoCh08G001950 vs. ExPASy TrEMBL
Match: A0A6J1KRC8 (protein SHORT-ROOT-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497575 PE=3 SV=1)

HSP 1 Score: 851.7 bits (2199), Expect = 1.4e-243
Identity = 420/452 (92.92%), Postives = 438/452 (96.90%), Query Frame = 0


Query: 1   MDITLFTAKEAPTIFFSESHDHRHCHRLHRVRFPNLAMQSSISQSSKYSLDHSPPAAAGK 60
           MDITLFTAKE+PT FFS+SHDHRH HRLHR+RFPNLAMQSS SQSS+YSLDHS PA  GK
Sbjct: 1   MDITLFTAKESPTTFFSQSHDHRHRHRLHRLRFPNLAMQSSTSQSSEYSLDHSLPATVGK 60

Query: 61  WASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLT 120
           WASTLLN+CARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFC+ TETGLT
Sbjct: 61  WASTLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCKVTETGLT 120

Query: 121 CYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD 180
           CYKTL+TV+EKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD
Sbjct: 121 CYKTLITVAEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD 180

Query: 181 TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMMEIGQRMEKFARLMGVPFEFNP 240
           TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLM EIGQRMEKFARLMGVPFEFNP
Sbjct: 181 TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMKEIGQRMEKFARLMGVPFEFNP 240

Query: 241 ITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIEERNAVISMLKSLKPRVLTIVEEE 300
           ITNLNQLSDLENEALKVEEDEAIAINCNGALRT+KIEERNAVISMLKSLKPRVLTIVEEE
Sbjct: 241 ITNLNQLSDLENEALKVEEDEAIAINCNGALRTVKIEERNAVISMLKSLKPRVLTIVEEE 300

Query: 301 ADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNES 360
           ADF+SSKN+F+S FDECLRFYTLYF+MLEE FEATSNEKLGLERECSRNIVR+LGCGNES
Sbjct: 301 ADFISSKNKFLSYFDECLRFYTLYFKMLEECFEATSNEKLGLERECSRNIVRLLGCGNES 360

Query: 361 ELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAID 420
           ELERELTSERREKGKQWS+RLEERGF SARFSDDVMDDVKALLKRYKPGW+LMH TGA D
Sbjct: 361 ELERELTSERREKGKQWSKRLEERGFSSARFSDDVMDDVKALLKRYKPGWSLMHWTGATD 420

Query: 421 TNRDEEEGGDDSSGIYLTWKEVPMVWISAWKP 453
           TNRDEEEGGDDS+GIYLTWKE P+VWISAWKP
Sbjct: 421 TNRDEEEGGDDSNGIYLTWKEEPVVWISAWKP 452

[Close]

BLAST of CmoCh08G001950 vs. ExPASy TrEMBL
Match: A0A6J1KPP4 (protein SHORT-ROOT-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497575 PE=3 SV=1)

HSP 1 Score: 783.1 bits (2021), Expect = 6.3e-223
Identity = 388/415 (93.49%), Postives = 403/415 (97.11%), Query Frame = 0


Query: 38  MQSSISQSSKYSLDHSPPAAAGKWASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGD 97
           MQSS SQSS+YSLDHS PA  GKWASTLLN+CARAISDKDSNKIHHLLWMLNELASPYGD
Sbjct: 1   MQSSTSQSSEYSLDHSLPATVGKWASTLLNECARAISDKDSNKIHHLLWMLNELASPYGD 60

Query: 98  SDQKLAYYFLQALFCRATETGLTCYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHV 157
           SDQKLAYYFLQALFC+ TETGLTCYKTL+TV+EKNYSFDSALKLILKFQEVSPWMTFGHV
Sbjct: 61  SDQKLAYYFLQALFCKVTETGLTCYKTLITVAEKNYSFDSALKLILKFQEVSPWMTFGHV 120

Query: 158 ASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSL 217
           ASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSL
Sbjct: 121 ASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSL 180

Query: 218 MMEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIE 277
           M EIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRT+KIE
Sbjct: 181 MKEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTVKIE 240

Query: 278 ERNAVISMLKSLKPRVLTIVEEEADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSN 337
           ERNAVISMLKSLKPRVLTIVEEEADF+SSKN+F+S FDECLRFYTLYF+MLEE FEATSN
Sbjct: 241 ERNAVISMLKSLKPRVLTIVEEEADFISSKNKFLSYFDECLRFYTLYFKMLEECFEATSN 300

Query: 338 EKLGLERECSRNIVRVLGCGNESELERELTSERREKGKQWSERLEERGFLSARFSDDVMD 397
           EKLGLERECSRNIVR+LGCGNESELERELTSERREKGKQWS+RLEERGF SARFSDDVMD
Sbjct: 301 EKLGLERECSRNIVRLLGCGNESELERELTSERREKGKQWSKRLEERGFSSARFSDDVMD 360

Query: 398 DVKALLKRYKPGWALMHRTGAIDTNRDEEEGGDDSSGIYLTWKEVPMVWISAWKP 453
           DVKALLKRYKPGW+LMH TGA DTNRDEEEGGDDS+GIYLTWKE P+VWISAWKP
Sbjct: 361 DVKALLKRYKPGWSLMHWTGATDTNRDEEEGGDDSNGIYLTWKEEPVVWISAWKP 415

[Close]

BLAST of CmoCh08G001950 vs. ExPASy TrEMBL
Match: A0A0A0K966 (GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G081510 PE=3 SV=1)

HSP 1 Score: 719.9 bits (1857), Expect = 6.5e-204
Identity = 363/462 (78.57%), Postives = 405/462 (87.66%), Query Frame = 0


Query: 1   MDITLFTAKEAPTIFFSESHDHRHCHRLHRVRFPNLAMQSSISQSSKYSLDHSPPAAA-- 60
           MDIT FTAKEAPT FF++SHDHRH H+LH + F NL MQSS S SS+YS +HSP AAA  
Sbjct: 1   MDITFFTAKEAPTSFFNQSHDHRHHHQLHHLHFSNLDMQSSTSHSSEYSPEHSPSAAAAA 60

Query: 61  ------GKWASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFC 120
                 GKWASTLL +CARAIS+KDSNKIHH LWMLNELASPYGDSDQK+A+YFLQALFC
Sbjct: 61  ATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMAFYFLQALFC 120

Query: 121 RATETGLTCYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETK 180
           RATETGLTCYKTLV V+EKN++FDSAL+LILKFQE SPW TFGHVASNGAILEALE ETK
Sbjct: 121 RATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETK 180

Query: 181 LHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMMEIGQRMEKFARLM 240
           LHIIDIS+TLCTQWPTLLESLATRNDDTPHLKLTVV+TT+ VK LM EIGQRMEKFARLM
Sbjct: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLM 240

Query: 241 GVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIEERNAVISMLKSLKPR 300
           GVPFEFNPITN++ L+DL NEALKVEE EAIAINC GALR +K+EERN VISMLKSLKPR
Sbjct: 241 GVPFEFNPITNIDHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKSLKPR 300

Query: 301 VLTIVEEEADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVR 360
           VLTIVEEEADF+SSKN+F+ CF+ECLRFYTLYFEMLEESF ATSNE+L LERECSR+IVR
Sbjct: 301 VLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVR 360

Query: 361 VLGCGNESELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWAL 420
           +LGC ++   E E+ SERREKGKQW++RL++  F SA FS+DVMDDVKALLKRYKPGWAL
Sbjct: 361 LLGCDHDQISEEEIGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGWAL 420

Query: 421 MH-RTGAIDTNRDEEEGGD-DSSGIYLTWKEVPMVWISAWKP 453
           +   T A+   RDEEE GD +SSGIYLTWKE P+VW+SAWKP
Sbjct: 421 LRPATAAV---RDEEENGDGESSGIYLTWKEEPVVWVSAWKP 459

[Close]

BLAST of CmoCh08G001950 vs. ExPASy TrEMBL
Match: A0A1S3CCT8 (protein SHORT-ROOT-like OS=Cucumis melo OX=3656 GN=LOC103498966 PE=3 SV=1)

HSP 1 Score: 702.2 bits (1811), Expect = 1.4e-198
Identity = 357/462 (77.27%), Postives = 395/462 (85.50%), Query Frame = 0


Query: 1   MDITLFTAKEAPTIFFSESHDHR-HCHRLHRVRFPNLAMQSSISQSSKYSLDHSPPAAA- 60
           MDIT FT KEAPT FF++SHDHR H H  H + F NL MQSS S SS+YS +HSP AAA 
Sbjct: 1   MDITFFTPKEAPTSFFNQSHDHRHHHHHHHHLHFSNLDMQSSTSHSSEYSPEHSPSAAAA 60

Query: 61  -------GKWASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALF 120
                  GKWASTLL +CARAIS+KDSNKIHH LWMLNELASPYGDSDQK+A YFLQALF
Sbjct: 61  AATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALF 120

Query: 121 CRATETGLTCYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERET 180
           CRATETGLTCYKTLV V+EKN++FDSAL+LILKFQE SPW TFGHVASNGAILEALE ET
Sbjct: 121 CRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGET 180

Query: 181 KLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMMEIGQRMEKFARL 240
           KLHIIDIS+TLCTQWPTLLESLATRNDDTPHLKLTVV+TT+ VK LM EIGQRMEKFARL
Sbjct: 181 KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARL 240

Query: 241 MGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIEERNAVISMLKSLKP 300
           MGVPFEFNPITN+N L+DL NEALKVEE EAIAINC GALR +K+EERN VISMLK LKP
Sbjct: 241 MGVPFEFNPITNINHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKLLKP 300

Query: 301 RVLTIVEEEADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIV 360
           RVLTIVEEEADF+SS N+F+ CF+ECLRFYTLYFEMLEESF ATSNE+L LERECSR+IV
Sbjct: 301 RVLTIVEEEADFISSTNDFLKCFEECLRFYTLYFEMLEESFGATSNERLVLERECSRSIV 360

Query: 361 RVLGCGNESELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWA 420
           R+LGC ++   E E+ SERREKGKQW++RL++  F SA FS+DVMDDVKALLKRYKPGWA
Sbjct: 361 RLLGCDHDQISEEEMGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGWA 420

Query: 421 LMHRTGAIDTNRDEEEGGD-DSSGIYLTWKEVPMVWISAWKP 453
           L+ R        DEEE GD + SGIYLTWKE P+VW+SAWKP
Sbjct: 421 LL-RPATAAVGVDEEENGDAEPSGIYLTWKEEPVVWVSAWKP 461

[Close]

BLAST of CmoCh08G001950 vs. NCBI nr
Match: XP_022960205.1 (protein SHORT-ROOT-like [Cucurbita moschata])

HSP 1 Score: 907.9 bits (2345), Expect = 3.5e-260
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0


Query: 1   MDITLFTAKEAPTIFFSESHDHRHCHRLHRVRFPNLAMQSSISQSSKYSLDHSPPAAAGK 60
           MDITLFTAKEAPTIFFSESHDHRHCHRLHRVRFPNLAMQSSISQSSKYSLDHSPPAAAGK
Sbjct: 1   MDITLFTAKEAPTIFFSESHDHRHCHRLHRVRFPNLAMQSSISQSSKYSLDHSPPAAAGK 60

Query: 61  WASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLT 120
           WASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLT
Sbjct: 61  WASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLT 120

Query: 121 CYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD 180
           CYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD
Sbjct: 121 CYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD 180

Query: 181 TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMMEIGQRMEKFARLMGVPFEFNP 240
           TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMMEIGQRMEKFARLMGVPFEFNP
Sbjct: 181 TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMMEIGQRMEKFARLMGVPFEFNP 240

Query: 241 ITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIEERNAVISMLKSLKPRVLTIVEEE 300
           ITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIEERNAVISMLKSLKPRVLTIVEEE
Sbjct: 241 ITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIEERNAVISMLKSLKPRVLTIVEEE 300

Query: 301 ADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNES 360
           ADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNES
Sbjct: 301 ADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNES 360

Query: 361 ELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAID 420
           ELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAID
Sbjct: 361 ELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAID 420

Query: 421 TNRDEEEGGDDSSGIYLTWKEVPMVWISAWKP 453
           TNRDEEEGGDDSSGIYLTWKEVPMVWISAWKP
Sbjct: 421 TNRDEEEGGDDSSGIYLTWKEVPMVWISAWKP 452

[Close]

BLAST of CmoCh08G001950 vs. NCBI nr
Match: XP_023515283.1 (protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 879.4 bits (2271), Expect = 1.3e-251
Identity = 435/452 (96.24%), Postives = 446/452 (98.67%), Query Frame = 0


Query: 1   MDITLFTAKEAPTIFFSESHDHRHCHRLHRVRFPNLAMQSSISQSSKYSLDHSPPAAAGK 60
           MDITLFTAKEAPTIFFS+SHDHRH HRLHRVRFPNLAMQSS SQSS+YSLDHSPPAAAGK
Sbjct: 1   MDITLFTAKEAPTIFFSQSHDHRHRHRLHRVRFPNLAMQSSTSQSSEYSLDHSPPAAAGK 60

Query: 61  WASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLT 120
           W+STLLN+CARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLT
Sbjct: 61  WSSTLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLT 120

Query: 121 CYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD 180
           CYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD
Sbjct: 121 CYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD 180

Query: 181 TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMMEIGQRMEKFARLMGVPFEFNP 240
           TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLM EIGQRMEKFARLMGVPFEFNP
Sbjct: 181 TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMKEIGQRMEKFARLMGVPFEFNP 240

Query: 241 ITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIEERNAVISMLKSLKPRVLTIVEEE 300
           ITNLNQLSDLENEALKVEEDEAIAINCNGALRT+KIEERNAVISMLKSLKPRVLTIVEEE
Sbjct: 241 ITNLNQLSDLENEALKVEEDEAIAINCNGALRTVKIEERNAVISMLKSLKPRVLTIVEEE 300

Query: 301 ADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNES 360
           ADF+SSKN+F+SCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVR+LGCGNE+
Sbjct: 301 ADFISSKNKFLSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRLLGCGNET 360

Query: 361 ELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAID 420
           ELERELTSERREKGKQWSERLEERGF SARF DDVMDDVKALLKRYKPGWALMHRTGAID
Sbjct: 361 ELERELTSERREKGKQWSERLEERGFSSARFCDDVMDDVKALLKRYKPGWALMHRTGAID 420

Query: 421 TNRDEEEGGDDSSGIYLTWKEVPMVWISAWKP 453
           TNRDEEEGGDDSSGIYLTWKE P+VWISAWKP
Sbjct: 421 TNRDEEEGGDDSSGIYLTWKEEPVVWISAWKP 452

[Close]

BLAST of CmoCh08G001950 vs. NCBI nr
Match: KAG6592976.1 (Protein SHORT-ROOT, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 870.9 bits (2249), Expect = 4.7e-249
Identity = 433/452 (95.80%), Postives = 441/452 (97.57%), Query Frame = 0


Query: 1   MDITLFTAKEAPTIFFSESHDHRHCHRLHRVRFPNLAMQSSISQSSKYSLDHSPPAAAGK 60
           MDITLFTAKEAPT FFS+S+DHRH  RLHRVRFPNLAMQSS SQSS+YSLD SPP AAGK
Sbjct: 1   MDITLFTAKEAPTAFFSQSYDHRHRLRLHRVRFPNLAMQSSTSQSSEYSLDRSPPTAAGK 60

Query: 61  WASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLT 120
           WASTLLN+CARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLT
Sbjct: 61  WASTLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLT 120

Query: 121 CYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD 180
           CYKTLVTVSEKNYSFDSALKLILKFQE SPWMTFGHVASNGAILEALERETKLHIIDISD
Sbjct: 121 CYKTLVTVSEKNYSFDSALKLILKFQEASPWMTFGHVASNGAILEALERETKLHIIDISD 180

Query: 181 TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMMEIGQRMEKFARLMGVPFEFNP 240
           TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVK LM EIGQRMEKFARLMGVPFEFNP
Sbjct: 181 TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKCLMKEIGQRMEKFARLMGVPFEFNP 240

Query: 241 ITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIEERNAVISMLKSLKPRVLTIVEEE 300
           ITNLNQLSDLENEALKVEEDEAIAINCNG LRT+KIEERNAVISMLKSLKPRVLTIVEEE
Sbjct: 241 ITNLNQLSDLENEALKVEEDEAIAINCNGGLRTVKIEERNAVISMLKSLKPRVLTIVEEE 300

Query: 301 ADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNES 360
           ADF+SSKNEF+SCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVR+LGCGNES
Sbjct: 301 ADFISSKNEFLSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRLLGCGNES 360

Query: 361 ELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAID 420
           ELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAID
Sbjct: 361 ELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAID 420

Query: 421 TNRDEEEGGDDSSGIYLTWKEVPMVWISAWKP 453
           TNRDEEEGGDD SGIYLTWKEVPMVWISAWKP
Sbjct: 421 TNRDEEEGGDDLSGIYLTWKEVPMVWISAWKP 452

[Close]

BLAST of CmoCh08G001950 vs. NCBI nr
Match: XP_023004171.1 (protein SHORT-ROOT-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 851.7 bits (2199), Expect = 3.0e-243
Identity = 420/452 (92.92%), Postives = 438/452 (96.90%), Query Frame = 0


Query: 1   MDITLFTAKEAPTIFFSESHDHRHCHRLHRVRFPNLAMQSSISQSSKYSLDHSPPAAAGK 60
           MDITLFTAKE+PT FFS+SHDHRH HRLHR+RFPNLAMQSS SQSS+YSLDHS PA  GK
Sbjct: 1   MDITLFTAKESPTTFFSQSHDHRHRHRLHRLRFPNLAMQSSTSQSSEYSLDHSLPATVGK 60

Query: 61  WASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLT 120
           WASTLLN+CARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFC+ TETGLT
Sbjct: 61  WASTLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCKVTETGLT 120

Query: 121 CYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD 180
           CYKTL+TV+EKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD
Sbjct: 121 CYKTLITVAEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISD 180

Query: 181 TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMMEIGQRMEKFARLMGVPFEFNP 240
           TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLM EIGQRMEKFARLMGVPFEFNP
Sbjct: 181 TLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMKEIGQRMEKFARLMGVPFEFNP 240

Query: 241 ITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIEERNAVISMLKSLKPRVLTIVEEE 300
           ITNLNQLSDLENEALKVEEDEAIAINCNGALRT+KIEERNAVISMLKSLKPRVLTIVEEE
Sbjct: 241 ITNLNQLSDLENEALKVEEDEAIAINCNGALRTVKIEERNAVISMLKSLKPRVLTIVEEE 300

Query: 301 ADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRVLGCGNES 360
           ADF+SSKN+F+S FDECLRFYTLYF+MLEE FEATSNEKLGLERECSRNIVR+LGCGNES
Sbjct: 301 ADFISSKNKFLSYFDECLRFYTLYFKMLEECFEATSNEKLGLERECSRNIVRLLGCGNES 360

Query: 361 ELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAID 420
           ELERELTSERREKGKQWS+RLEERGF SARFSDDVMDDVKALLKRYKPGW+LMH TGA D
Sbjct: 361 ELERELTSERREKGKQWSKRLEERGFSSARFSDDVMDDVKALLKRYKPGWSLMHWTGATD 420

Query: 421 TNRDEEEGGDDSSGIYLTWKEVPMVWISAWKP 453
           TNRDEEEGGDDS+GIYLTWKE P+VWISAWKP
Sbjct: 421 TNRDEEEGGDDSNGIYLTWKEEPVVWISAWKP 452

[Close]

BLAST of CmoCh08G001950 vs. NCBI nr
Match: KAG7025389.1 (Protein SHORT-ROOT [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 803.1 bits (2073), Expect = 1.2e-228
Identity = 399/415 (96.14%), Postives = 406/415 (97.83%), Query Frame = 0


Query: 38  MQSSISQSSKYSLDHSPPAAAGKWASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGD 97
           MQSS SQSS+YSLD SPP AAGKWASTLL +CARAISDKDSNKIHHLLWMLNELASPYGD
Sbjct: 1   MQSSTSQSSEYSLDRSPPTAAGKWASTLLKECARAISDKDSNKIHHLLWMLNELASPYGD 60

Query: 98  SDQKLAYYFLQALFCRATETGLTCYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHV 157
           SDQKLAYYFLQALFCRATETGLTCYKTLVTVSEKNYSFDSALKLILKFQE SPWMTFGHV
Sbjct: 61  SDQKLAYYFLQALFCRATETGLTCYKTLVTVSEKNYSFDSALKLILKFQEASPWMTFGHV 120

Query: 158 ASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSL 217
           ASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVK L
Sbjct: 121 ASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKCL 180

Query: 218 MMEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTIKIE 277
           M EIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNG LRT+KIE
Sbjct: 181 MKEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGGLRTVKIE 240

Query: 278 ERNAVISMLKSLKPRVLTIVEEEADFLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSN 337
           ERNAVISMLKSLKPRVLT+VEEEADF+SSKNEF+SCFDECLRFYTLYFEMLEESFEATSN
Sbjct: 241 ERNAVISMLKSLKPRVLTMVEEEADFISSKNEFLSCFDECLRFYTLYFEMLEESFEATSN 300

Query: 338 EKLGLERECSRNIVRVLGCGNESELERELTSERREKGKQWSERLEERGFLSARFSDDVMD 397
           EKLGLERECSRNIVR+LGCGNESELERELTSERREKGKQWSERLEERGFLSARFSDDVMD
Sbjct: 301 EKLGLERECSRNIVRLLGCGNESELERELTSERREKGKQWSERLEERGFLSARFSDDVMD 360

Query: 398 DVKALLKRYKPGWALMHRTGAIDTNRDEEEGGDDSSGIYLTWKEVPMVWISAWKP 453
           DVKALLKRYKPGWALMHRTGAIDTNRDEEEGGDDSSGIYLTWKE PMVWISAWKP
Sbjct: 361 DVKALLKRYKPGWALMHRTGAIDTNRDEEEGGDDSSGIYLTWKEEPMVWISAWKP 415

[Close]

BLAST of CmoCh08G001950 vs. TAIR 10
Match: AT4G37650.1 (GRAS family transcription factor )

HSP 1 Score: 397.5 bits (1020), Expect = 1.4e-110
Identity = 214/428 (50.00%), Postives = 288/428 (67.29%), Query Frame = 0


Query: 46  SKYSLDHSPP----AAAGKWASTLLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQK 105
           S +S+  +PP    +A  KWA ++L + ARA SDKD+ +   +LW LNEL+SPYGD++QK
Sbjct: 123 SAFSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQK 182

Query: 106 LAYYFLQALFCRATETGLTCYKTLVT--VSEKNYSFDSALKLILKFQEVSPWMTFGHVAS 165
           LA YFLQALF R T +G  CY+T+VT   +EK  SF+S  K +LKFQEVSPW TFGHVA+
Sbjct: 183 LASYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAA 242

Query: 166 NGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKS--- 225
           NGAILEA++ E K+HI+DIS T CTQWPTLLE+LATR+DDTPHL+LT V    K  +   
Sbjct: 243 NGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQT 302

Query: 226 ----LMMEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALR 285
               +M EIG RMEKFARLMGVPF+FN I ++  LS+ +   L V+ DE +AINC GA+ 
Sbjct: 303 ASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMH 362

Query: 286 TI--KIEERNAVISMLKSLKPRVLTIVEEEADFLSSK-----NEFMSCFDECLRFYTLYF 345
            I  +   R+AVIS  + L+PR++T+VEEEAD +  +     +EF+  F ECLR++ + F
Sbjct: 363 GIASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCF 422

Query: 346 EMLEESFEATSNEKLGLERECSRNIVRVLGCGNESELERELTSERREKGKQWSERLEERG 405
           E  EESF  TSNE+L LER   R IV ++ C      E   ++ERRE  ++WS R+   G
Sbjct: 423 ESWEESFPRTSNERLMLERAAGRAIVDLVAC------EPSDSTERRETARKWSRRMRNSG 482

Query: 406 FLSARFSDDVMDDVKALLKRYKPG-WALMHRTGAIDTNRDEEEGGDDSSGIYLTWKEVPM 453
           F +  +SD+V DDV+ALL+RYK G W+++                 D++GI+L W++ P+
Sbjct: 483 FGAVGYSDEVADDVRALLRRYKEGVWSMVQ--------------CPDAAGIFLCWRDQPV 530

[Close]

BLAST of CmoCh08G001950 vs. TAIR 10
Match: AT3G49950.1 (GRAS family transcription factor )

HSP 1 Score: 176.4 bits (446), Expect = 5.2e-44
Identity = 127/408 (31.13%), Postives = 198/408 (48.53%), Query Frame = 0


Query: 65  LLNDCARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLTCYKT 124
           LL  CA AI   D+   H +LW+LN +A P GDS Q+L   FL+AL  RA     T   T
Sbjct: 30  LLLHCATAIDSNDAALTHQILWVLNNIAPPDGDSTQRLTSAFLRALLSRAVSKTPTLSST 89

Query: 125 LVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISDTLCT 184
           +  + + +     ++  +  F +++PW  FG +A+N AIL A+E  + +HI+D+S T C 
Sbjct: 90  ISFLPQADELHRFSVVELAAFVDLTPWHRFGFIAANAAILTAVEGYSTVHIVDLSLTHCM 149

Query: 185 QWPTLLESLATR-NDDTPHLKLTVVSTTTK----VKSLMMEIGQRMEKFARLMGVPFEFN 244
           Q PTL++++A+R N   P LKLTVVS++      +     E+G ++  FA    +  EF 
Sbjct: 150 QIPTLIDAMASRLNKPPPLLKLTVVSSSDHFPPFINISYEELGSKLVNFATTRNITMEFT 209

Query: 245 --PITNLNQLSDLENEALKV---EEDEAIAINCNGALRTIKIEE--------RNAVISML 304
             P T  +  S L  + L++     +EA+ +NC+  LR I  E         R   +  L
Sbjct: 210 IVPSTYSDGFSSLLQQ-LRIYPSSFNEALVVNCHMMLRYIPEEPLTSSSSSLRTVFLKQL 269

Query: 305 KSLKPRVLTIVEEEADFLSSK--NEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLER 364
           +SL PR++T++EE+ D  S    N   S F+    ++ + F+  +      S ++   E 
Sbjct: 270 RSLNPRIVTLIEEDVDLTSENLVNRLKSAFN----YFWIPFDTTDTFM---SEQRRWYEA 329

Query: 365 ECSRNIVRVLGCGNESELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLK 424
           E S  I  V+       +ER  T  R      W ER+ E  F   R  +D + DVKA+L+
Sbjct: 330 EISWKIENVVAKEGAERVERTETKRR------WIERMREAEFGGVRVKEDAVADVKAMLE 389

Query: 425 RYKPGWALMHRTGAIDTNRDEEEGGDDSSGIYLTWKEVPMVWISAWKP 453
            +  GW +                 DD   + LTWK   +V+ + W P
Sbjct: 390 EHAVGWGMKKE--------------DDDESLVLTWKGHSVVFATVWVP 409

[Close]

BLAST of CmoCh08G001950 vs. TAIR 10
Match: AT2G04890.1 (SCARECROW-like 21 )

HSP 1 Score: 172.2 bits (435), Expect = 9.7e-43
Identity = 112/390 (28.72%), Postives = 197/390 (50.51%), Query Frame = 0


Query: 69  CARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLTCYKTLVTV 128
           CA+A+S+ +       +  L  + S  G+  Q+L  Y L+ L  R   +G + YK+L + 
Sbjct: 57  CAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSR 116

Query: 129 SEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISDTLCTQWPT 188
             ++Y F   L  +    EV P+  FG++++NGAI EA++ E ++HIID      +QW  
Sbjct: 117 EPESYEF---LSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWIA 176

Query: 189 LLESLATRNDDTPHLKLTVVSTTTKVKSLMMEIGQRMEKFARLMGVPFEFNPITNLNQLS 248
           L+++ A R    P++++T V       S+++ + +R+EK A+   VPF FN ++  +   
Sbjct: 177 LIQAFAARPGGAPNIRITGVGD----GSVLVTVKKRLEKLAKKFDVPFRFNAVSRPS--C 236

Query: 249 DLENEALKVEEDEAIAINCNGALRTIKIE------ERNAVISMLKSLKPRVLTIVEEEAD 308
           ++E E L V + EA+ +N    L  +  E       R+ ++ M+KSL P+V+T+VE+E +
Sbjct: 237 EVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECN 296

Query: 309 FLSSKNEFMSCFDECLRFYTLYFEMLEESFEATSNEKLGLEREC-SRNIVRVLGCGNESE 368
             ++ + F+  F E L +YT  FE ++        E++ +E+ C +R++V ++ C     
Sbjct: 297 --TNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAER 356

Query: 369 LERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAIDT 428
           +      ER E   +W  R    GF     S  +   ++ALL+ Y  G+A+  R GA   
Sbjct: 357 I------ERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIEERDGA--- 413

Query: 429 NRDEEEGGDDSSGIYLTWKEVPMVWISAWK 452
                        +YL W +  +V   AWK
Sbjct: 417 -------------LYLGWMDRILVSSCAWK 413

[Close]

BLAST of CmoCh08G001950 vs. TAIR 10
Match: AT5G48150.1 (GRAS family transcription factor )

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-40
Identity = 117/424 (27.59%), Postives = 200/424 (47.17%), Query Frame = 0


Query: 49  SLDHSPPAAAGKWASTL-----------LNDCARAISDKDSNKIHHLLWMLNELASPYGD 108
           S D +       W STL           L  CA+A+S+ D    H ++  L ++ S  G+
Sbjct: 95  SFDSTASQEINGWRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGE 154

Query: 109 SDQKLAYYFLQALFCRATETGLTCYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHV 168
             Q+L  Y L+ L  +   +G + YK L    E   +    L  +    EV P+  FG++
Sbjct: 155 PIQRLGAYLLEGLVAQLASSGSSIYKALNRCPEP--ASTELLSYMHILYEVCPYFKFGYM 214

Query: 169 ASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSL 228
           ++NGAI EA++ E ++HIID      +QW TL+++ A R    P +++T +   T   + 
Sbjct: 215 SANGAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYAR 274

Query: 229 ---MMEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTI 288
              +  +G R+ K A+   VPFEFN ++    +S+++ + L V   EA+A+N    L  +
Sbjct: 275 GGGLSIVGNRLAKLAKQFNVPFEFNSVS--VSVSEVKPKNLGVRPGEALAVNFAFVLHHM 334

Query: 289 KIE------ERNAVISMLKSLKPRVLTIVEEEADFLSSKNEFMSCFDECLRFYTLYFEML 348
             E       R+ ++ M+KSL P+V+T+VE+E++  ++   F   F E + +Y   FE +
Sbjct: 335 PDESVSTENHRDRLLRMVKSLSPKVVTLVEQESN--TNTAAFFPRFMETMNYYAAMFESI 394

Query: 349 EESFEATSNEKLGLEREC-SRNIVRVLGCGNESELERELTSERREKGKQWSERLEERGFL 408
           + +      +++ +E+ C +R++V ++ C     +      ER E   +W  R    GF 
Sbjct: 395 DVTLPRDHKQRINVEQHCLARDVVNIIACEGADRV------ERHELLGKWRSRFGMAGFT 454

Query: 409 SARFSDDVMDDVKALLKRYKPGWALMHRTGAIDTNRDEEEGGDDSSGIYLTWKEVPMVWI 452
               S  V   +K+LL+ Y   + L  R GA                +YL W    +V  
Sbjct: 455 PYPLSPLVNSTIKSLLRNYSDKYRLEERDGA----------------LYLGWMHRDLVAS 490

[Close]

BLAST of CmoCh08G001950 vs. TAIR 10
Match: AT5G48150.2 (GRAS family transcription factor )

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-40
Identity = 117/424 (27.59%), Postives = 200/424 (47.17%), Query Frame = 0


Query: 49  SLDHSPPAAAGKWASTL-----------LNDCARAISDKDSNKIHHLLWMLNELASPYGD 108
           S D +       W STL           L  CA+A+S+ D    H ++  L ++ S  G+
Sbjct: 95  SFDSTASQEINGWRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGE 154

Query: 109 SDQKLAYYFLQALFCRATETGLTCYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHV 168
             Q+L  Y L+ L  +   +G + YK L    E   +    L  +    EV P+  FG++
Sbjct: 155 PIQRLGAYLLEGLVAQLASSGSSIYKALNRCPEP--ASTELLSYMHILYEVCPYFKFGYM 214

Query: 169 ASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSL 228
           ++NGAI EA++ E ++HIID      +QW TL+++ A R    P +++T +   T   + 
Sbjct: 215 SANGAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYAR 274

Query: 229 ---MMEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTI 288
              +  +G R+ K A+   VPFEFN ++    +S+++ + L V   EA+A+N    L  +
Sbjct: 275 GGGLSIVGNRLAKLAKQFNVPFEFNSVS--VSVSEVKPKNLGVRPGEALAVNFAFVLHHM 334

Query: 289 KIE------ERNAVISMLKSLKPRVLTIVEEEADFLSSKNEFMSCFDECLRFYTLYFEML 348
             E       R+ ++ M+KSL P+V+T+VE+E++  ++   F   F E + +Y   FE +
Sbjct: 335 PDESVSTENHRDRLLRMVKSLSPKVVTLVEQESN--TNTAAFFPRFMETMNYYAAMFESI 394

Query: 349 EESFEATSNEKLGLEREC-SRNIVRVLGCGNESELERELTSERREKGKQWSERLEERGFL 408
           + +      +++ +E+ C +R++V ++ C     +      ER E   +W  R    GF 
Sbjct: 395 DVTLPRDHKQRINVEQHCLARDVVNIIACEGADRV------ERHELLGKWRSRFGMAGFT 454

Query: 409 SARFSDDVMDDVKALLKRYKPGWALMHRTGAIDTNRDEEEGGDDSSGIYLTWKEVPMVWI 452
               S  V   +K+LL+ Y   + L  R GA                +YL W    +V  
Sbjct: 455 PYPLSPLVNSTIKSLLRNYSDKYRLEERDGA----------------LYLGWMHRDLVAS 490

The following BLAST results are available for this feature:

BLAST of CmoCh08G001950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZF7	2.0e-109	50.00	Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1	[more]
A2XIA8	2.1e-103	47.13	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1	[more]
Q75I13	2.8e-103	47.13	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1	[more]
A2YN56	1.4e-99	46.30	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1	[more]
Q8H2X8	1.9e-99	46.30	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2	[more]

BLAST of CmoCh08G001950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8G1	1.7e-260	100.00	protein SHORT-ROOT-like OS=Cucurbita moschata OX=3662 GN=LOC111461014 PE=3 SV=1	[more]
A0A6J1KRC8	1.4e-243	92.92	protein SHORT-ROOT-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497575 P...	[more]
A0A6J1KPP4	6.3e-223	93.49	protein SHORT-ROOT-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497575 P...	[more]
A0A0A0K966	6.5e-204	78.57	GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G081510 PE=3 S...	[more]
A0A1S3CCT8	1.4e-198	77.27	protein SHORT-ROOT-like OS=Cucumis melo OX=3656 GN=LOC103498966 PE=3 SV=1	[more]

BLAST of CmoCh08G001950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960205.1	3.5e-260	100.00	protein SHORT-ROOT-like [Cucurbita moschata]	[more]
XP_023515283.1	1.3e-251	96.24	protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo]	[more]
KAG6592976.1	4.7e-249	95.80	Protein SHORT-ROOT, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023004171.1	3.0e-243	92.92	protein SHORT-ROOT-like isoform X1 [Cucurbita maxima]	[more]
KAG7025389.1	1.2e-228	96.14	Protein SHORT-ROOT [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmoCh08G001950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37650.1	1.4e-110	50.00	GRAS family transcription factor	[more]
AT3G49950.1	5.2e-44	31.13	GRAS family transcription factor	[more]
AT2G04890.1	9.7e-43	28.72	SCARECROW-like 21	[more]
AT5G48150.1	1.2e-40	27.59	GRAS family transcription factor	[more]
AT5G48150.2	1.2e-40	27.59	GRAS family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 325..345
None	No IPR available	PANTHER	PTHR31636:SF194	PROTEIN SHORT-ROOT-LIKE	coord: 41..451
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 64..451 e-value: 6.0E-94 score: 315.1
IPR005202	Transcription factor GRAS	PANTHER	PTHR31636	OSJNBA0084A10.13 PROTEIN-RELATED	coord: 41..451
IPR005202	Transcription factor GRAS	PROSITE	PS50985	GRAS	coord: 53..451 score: 67.100372

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G001950.1	CmoCh08G001950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding