CmoCh07G011010 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G011010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	high mobility group B protein 1-like
Location	Cmo_Chr07: 5762444 .. 5764192 (+)
RNA-Seq Expression	CmoCh07G011010
Synteny	CmoCh07G011010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGGTCCAAGGGCAAGAGAACGTCAAAGGTCTCGAAAGAAGCTTTGAAACCAGTGGATGATAGGTAGTGTTTTGCTCATTGTTCCTCTACAAATCTCATATCTTATTGGTTTGATGAAATAAATCCTTGTATATTGTTAGGTTATGAAATAAGTGTTTTCCAGCTAGTTTAATGAGTTCTATTGATGTGTAATATCCACATACTTGGTGGTGTACACAGTGTTTACAGGAATTTTGTAGTGACGGATCATAAATATATCTAATTCTTTACAGAAAGGTTGGGAAGCGAAAGGCTGCTGTCAAGGCCGATAAGGGAATCAAACGACCAACAAAGAAAGATTTGAAGGCCAAGAAAGATCCCAACAAACCTAAGAGGCCTTCGAGTGCTTTCTTTGTTTTCCTGTTCGTATTCGTCGTTTACTGTTTTGTTTTCAGGCTAAAACCTATTTGTTTGATTTCTTATTTGTTAAAATTTTATGAACAGCGAGGACTTCAGAAAGGAATACAAAAGGGAAAATCCTAATGTGAAGTCTGTGTCTGCAGTATGTGATCACTGAAATTGTTCTTAAGATTTACACAACTTGAGATGCAAATATAGGATAAATTGTTAACATTTGCTCCACACTTGCAGGTCGGAAAAGCTGGAGGACAGAAGTGGAAATCCTTGAGTCAGTCTGTAAGTAATATTGTGTATTACATATAAATGGAAGCAGGCGAACTCTTTATCTTGCCTTTTGGATTTATCAGTTTTTTACTGGTTGGGTTTTTCTCATTTAATGCCTTACTCACGTAAAAGGAAAGAGCACCATATGAAGCCAAGGCGGCAAAGAGGAAGGCCGAATATGAAAAGCTTATGAAGGCATATGACAAGAAGGTAGGTGTGGTGCTCTGTTTTTTTGTGTATCGATCATGTTATAAGGCAACGTGACCACTAAGGTAGCGTGCTTATACTTATACACCCTTTTATCTGGGAATAGGCTAGCGCAGCAGAGGACGAAGAATCGGAGAGGTCGAAATCTGAAGTGAATGACGAGGATGAGGCCAGTGAGGAGGTATTTTTGACATATAATACGCAAATGGCTTCAGTGCCTGTATGAAGACTGTTTGCGTGCATTTCAATTCATAATAAGCAAATTAAGATTATAGGGTATTCTGTATGTGTACATTAATGAAATTATGAGTAGCAACCTGAGCAGAGAAGTTAAAGGTTAGAGGTCAGAGGTTCGACCTCCCACAGGTCACCTTCCTTTCCTGTATCTAAATTATGTTAATTACTCAATTATTTGCAGGAGCATGAAGAGGATGATGACAACACTGAGGAAGATGATGACGACAACGAGGAAGACGATGACTAAACTGAAAGCATCTTTCTGACAATTGGAAGGCCGATCGAGGGAGGGATCAGGTCAATGTATGTCCATATGTTTAGAATTTGCGTGCTTTCTGTTCTTTTGTGTGTGCAAAATGGGAAATGTCCTATGCCACTTCCGTGATATCTCTTCTTCCTTACTGTTTAAATGGTCTTCTCCACTCGCATCGCTTTTGTGATATACATTGTTAAAATCTTTCTGGGGTGTTCTGGCCTTTGATAACCAACATAAAATTGTCAAATACATCCTTTTGAAAGCTGTACTTAACTTTCATAAATAGTTCTTAAATCCTCATAATCAGTCTTATCATTGAGGCTATTTATTGTTATTACAACGGTTAAAACTAAATAAAATCATTCCAACTTCCTTTGCTAA

mRNA sequence

ATGAAGGGGTCCAAGGGCAAGAGAACGTCAAAGGTCTCGAAAGAAGCTTTGAAACCAGTGGATGATAGAAAGGTTGGGAAGCGAAAGGCTGCTGTCAAGGCCGATAAGGGAATCAAACGACCAACAAAGAAAGATTTGAAGGCCAAGAAAGATCCCAACAAACCTAAGAGGCCTTCGAGTGCTTTCTTTGTTTTCCTCGAGGACTTCAGAAAGGAATACAAAAGGGAAAATCCTAATGTGAAGTCTGTGTCTGCAGTCGGAAAAGCTGGAGGACAGAAGTGGAAATCCTTGAGTCAGTCTGAAAGAGCACCATATGAAGCCAAGGCGGCAAAGAGGAAGGCCGAATATGAAAAGCTTATGAAGGCATATGACAAGAAGGCTAGCGCAGCAGAGGACGAAGAATCGGAGAGGTCGAAATCTGAAGTGAATGACGAGGATGAGGCCAGTGAGGAGGAGCATGAAGAGGATGATGACAACACTGAGGAAGATGATGACGACAACGAGGAAGACGATGACTAAACTGAAAGCATCTTTCTGACAATTGGAAGGCCGATCGAGGGAGGGATCAGGTCAATGTATGTCCATATGTTTAGAATTTGCGTGCTTTCTGTTCTTTTGTGTGTGCAAAATGGGAAATGTCCTATGCCACTTCCGTGATATCTCTTCTTCCTTACTGTTTAAATGGTCTTCTCCACTCGCATCGCTTTTGTGATATACATTGTTAAAATCTTTCTGGGGTGTTCTGGCCTTTGATAACCAACATAAAATTGTCAAATACATCCTTTTGAAAGCTGTACTTAACTTTCATAAATAGTTCTTAAATCCTCATAATCAGTCTTATCATTGAGGCTATTTATTGTTATTACAACGGTTAAAACTAAATAAAATCATTCCAACTTCCTTTGCTAA

Coding sequence (CDS)

ATGAAGGGGTCCAAGGGCAAGAGAACGTCAAAGGTCTCGAAAGAAGCTTTGAAACCAGTGGATGATAGAAAGGTTGGGAAGCGAAAGGCTGCTGTCAAGGCCGATAAGGGAATCAAACGACCAACAAAGAAAGATTTGAAGGCCAAGAAAGATCCCAACAAACCTAAGAGGCCTTCGAGTGCTTTCTTTGTTTTCCTCGAGGACTTCAGAAAGGAATACAAAAGGGAAAATCCTAATGTGAAGTCTGTGTCTGCAGTCGGAAAAGCTGGAGGACAGAAGTGGAAATCCTTGAGTCAGTCTGAAAGAGCACCATATGAAGCCAAGGCGGCAAAGAGGAAGGCCGAATATGAAAAGCTTATGAAGGCATATGACAAGAAGGCTAGCGCAGCAGAGGACGAAGAATCGGAGAGGTCGAAATCTGAAGTGAATGACGAGGATGAGGCCAGTGAGGAGGAGCATGAAGAGGATGATGACAACACTGAGGAAGATGATGACGACAACGAGGAAGACGATGACTAA

Protein sequence

MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSSAFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLMKAYDKKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEEDDD

Homology

[Close]

BLAST of CmoCh07G011010 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.1e-42
Identity = 119/181 (65.75%), Postives = 141/181 (77.90%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MK +KGK   K +KEALKPVDDRKVGKRKA   A+K  KR T+K+ KAKKDPNKPKR  S
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLEDFR  +K+ENPNVK+VSAVGKAGGQKWKS+SQ+E+APYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEH----------EEDDDNTEEDDDDNEED 172
            AY+K      D ESE+S+SE+NDEDEAS EE           EE+++  ++DDDD+EE+
Sbjct: 121 DAYNKNLEEGSD-ESEKSRSEINDEDEASGEEELLEKEAAGDDEEEEEEEDDDDDDDEEE 178

[Close]

BLAST of CmoCh07G011010 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.9e-29
Identity = 88/140 (62.86%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 24  KVGKRKAAVKADK--GIKRPTKKDLKAKKDPNKPKRPSSAFFVFLEDFRKEYKRENPNVK 83
           K  K KA  ++ K    K+P K    A KDPNKPKRPSSAFFVF+EDFR  YK E+P  K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 84  SVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLMKAYDKKASAA--EDEESERSK 143
           SV+AVGKAGG+KWKSLS SE+APY AKA KRK EYEK MKAY+KK      EDEES++S 
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSV 121

Query: 144 SEVNDEDEASEEEHEEDDDN 160
           SEVNDED+A +   EE+DD+
Sbjct: 122 SEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of CmoCh07G011010 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.3e-28
Identity = 86/161 (53.42%), Postives = 108/161 (67.08%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MKG+K K  ++ SK ++     +  G+ KAA                  KDPNKPKRP+S
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAA-----------------KDPNKPKRPAS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVF+EDFR+ +K+ENP  KSV+ VGKA G KWKSLS SE+APY AKA KRK EYEK +
Sbjct: 61  AFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNI 120

Query: 121 KAYDKKASAA--EDEESERSKSEVNDEDEASEEEHEEDDDN 160
           KAY+KK      EDEES++S SEVNDED+A +   EE+DD+
Sbjct: 121 KAYNKKLEEGPKEDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of CmoCh07G011010 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-27
Identity = 86/159 (54.09%), Postives = 111/159 (69.81%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MKG K K  SK +        + K+   K    A KG K+P K   K  KDPNKPKRP S
Sbjct: 1   MKGGKSKGESKKA--------ETKLAVNKKGAAATKGGKKPAKG--KEPKDPNKPKRPPS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVF+ DFR++YK+++PN KSV+AVGKA G++WKSLS+ E+APY  +A K+K EYE  +
Sbjct: 61  AFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITL 120

Query: 121 KAYDKKASAAEDEE-SERSKSEVNDEDEASEEEHEEDDD 159
           +AY+KK    +DEE S++SKSEVNDEDE  E+E +EDDD
Sbjct: 121 QAYNKKLEGKDDEEGSDKSKSEVNDEDEDEEDEEDEDDD 149

[Close]

BLAST of CmoCh07G011010 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-25
Identity = 87/163 (53.37%), Postives = 111/163 (68.10%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MKG K K  SK +   L       V K+ AA KA    ++P  K  KA KDPNKPKRP S
Sbjct: 1   MKGGKSKTESKRADPKL------AVNKKGAATKA----RKPAGKG-KAAKDPNKPKRPPS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVF+E+FRK + +E+P  K+VSAVGKA G KWK++S +E+APY AK+ KRK EYEK M
Sbjct: 61  AFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNM 120

Query: 121 KAYDKK----ASAAEDEESERSKSEVNDEDEASEEEHEEDDDN 160
           +AY+KK     +  ++EESE+S SEVNDED+  E   EE+DD+
Sbjct: 121 RAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

[Close]

BLAST of CmoCh07G011010 vs. ExPASy TrEMBL
Match: A0A6J1F068 (high mobility group B protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111438214 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 7.0e-74
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS
Sbjct: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120

Query: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEEDDD 173
           KAYDKKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEEDDD
Sbjct: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEEDDD 172

[Close]

BLAST of CmoCh07G011010 vs. ExPASy TrEMBL
Match: A0A6J1HS33 (high mobility group B protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466235 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 5.5e-71
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS
Sbjct: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120

Query: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEEDD 172
           KAYDKKASAAEDEESERSKSEVNDEDEASEEEH EDDDNTEEDDDD E+DD
Sbjct: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEH-EDDDNTEEDDDDEEDDD 170

[Close]

BLAST of CmoCh07G011010 vs. ExPASy TrEMBL
Match: A0A0A0L1B2 (HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.8e-62
Identity = 152/171 (88.89%), Postives = 163/171 (95.32%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MKGSKGK TS+VSKEALKPVDDRKVGKRKA VKADKGIKRPTKKDLKAKKDPNKPKRP S
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FRKEYKRENPNVK+VSAVGKAGG+KWKSLS +E+APYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 KAYD-KKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEED 171
           +AYD KKASAA+DEESERSKSEVNDEDEASEEEH+EDDD  EED+DD E+D
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEDDD--EEDEDDEEDD 169

[Close]

BLAST of CmoCh07G011010 vs. ExPASy TrEMBL
Match: A0A1S3BML2 (high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.0e-61
Identity = 150/172 (87.21%), Postives = 164/172 (95.35%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MKGSKGK TS+VSKEALKPVDDRKVGKRKA VKADKG KRPTKKDLKAKKDPNKPKRP S
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FRKEYKRENPNVK+VSAVGKAGG+KWKSLS +E+APYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 KAYD-KKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEEDD 172
           +AYD KKASAA+DEESERSKSEVNDEDEASEEEH+E+DD  EED++D+E+DD
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDD--EEDEEDDEDDD 170

[Close]

BLAST of CmoCh07G011010 vs. ExPASy TrEMBL
Match: A0A6J1DBK9 (high mobility group B protein 1 OS=Momordica charantia OX=3673 GN=LOC111019485 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.4e-58
Identity = 142/172 (82.56%), Postives = 161/172 (93.60%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MKGSKGK TS+VSKEALKPVDDRKVGKRKAA+KADK  KRPTKKDLKAKKDPNKPKRP S
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FRKE+KR+NP+VK+VSAVGKAGG+KWKSLS +E+APYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120

Query: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEEDDD 173
           +AYD K   A DEESERSKSEVNDEDEASEEEH++DDD+ EEDD+D+E++DD
Sbjct: 121 RAYDSK--KASDEESERSKSEVNDEDEASEEEHQDDDDDAEEDDEDDEDEDD 170

[Close]

BLAST of CmoCh07G011010 vs. NCBI nr
Match: XP_022931941.1 (high mobility group B protein 1-like [Cucurbita moschata] >XP_022931942.1 high mobility group B protein 1-like [Cucurbita moschata] >XP_022931943.1 high mobility group B protein 1-like [Cucurbita moschata] >KAG6595388.1 High mobility group B protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027397.1 High mobility group B protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 286.6 bits (732), Expect = 1.4e-73
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS
Sbjct: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120

Query: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEEDDD 173
           KAYDKKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEEDDD
Sbjct: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEEDDD 172

[Close]

BLAST of CmoCh07G011010 vs. NCBI nr
Match: XP_022966604.1 (high mobility group B protein 1-like [Cucurbita maxima] >XP_022966605.1 high mobility group B protein 1-like [Cucurbita maxima] >XP_022966606.1 high mobility group B protein 1-like [Cucurbita maxima])

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS
Sbjct: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120

Query: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEEDD 172
           KAYDKKASAAEDEESERSKSEVNDEDEASEEEH EDDDNTEEDDDD E+DD
Sbjct: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEH-EDDDNTEEDDDDEEDDD 170

[Close]

BLAST of CmoCh07G011010 vs. NCBI nr
Match: XP_023518849.1 (high mobility group B protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.0 bits (702), Expect = 4.3e-70
Identity = 166/171 (97.08%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MK SKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS
Sbjct: 1   MKESKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120

Query: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEEDD 172
           KAYDKKASAAEDEESERSKSEVNDEDEASEEEHEEDDDN+EEDD D E+DD
Sbjct: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNSEEDDGDEEDDD 171

[Close]

BLAST of CmoCh07G011010 vs. NCBI nr
Match: XP_011653690.1 (high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 high mobility group B protein 1 [Cucumis sativus] >XP_031740703.1 high mobility group B protein 1 [Cucumis sativus] >KGN54377.1 hypothetical protein Csa_017866 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 5.7e-62
Identity = 152/171 (88.89%), Postives = 163/171 (95.32%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MKGSKGK TS+VSKEALKPVDDRKVGKRKA VKADKGIKRPTKKDLKAKKDPNKPKRP S
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FRKEYKRENPNVK+VSAVGKAGG+KWKSLS +E+APYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 KAYD-KKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEED 171
           +AYD KKASAA+DEESERSKSEVNDEDEASEEEH+EDDD  EED+DD E+D
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEDDD--EEDEDDEEDD 169

[Close]

BLAST of CmoCh07G011010 vs. NCBI nr
Match: XP_038883904.1 (high mobility group B protein 1 [Benincasa hispida] >XP_038883905.1 high mobility group B protein 1 [Benincasa hispida] >XP_038883906.1 high mobility group B protein 1 [Benincasa hispida])

HSP 1 Score: 247.3 bits (630), Expect = 9.7e-62
Identity = 152/173 (87.86%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MKGSKGK TS+VSKEALKPVDDRKVGKRKAAVKADKG+ RPTKKDLKAKKDPNKPKRP S
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGVNRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FRKEYKRENPNVK+VSAVGKAGG+KWKSLS +E+APYEA+AAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEARAAKRKAEYEKLM 120

Query: 121 KAYD-KKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDDDDNEEDDD 173
           KAYD KKASAA+DEESERSKSEVNDEDEASEEEH+EDDD  E+DD+D +EDDD
Sbjct: 121 KAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEDDD--EDDDEDEDEDDD 171

[Close]

BLAST of CmoCh07G011010 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 182.2 bits (461), Expect = 3.6e-46
Identity = 116/164 (70.73%), Postives = 135/164 (82.32%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MK +KGK   K +KEALKPVDDRKVGKRKA   A+K  KR T+K+ KAKKDPNKPKR  S
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLEDFR  +K+ENPNVK+VSAVGKAGGQKWKS+SQ+E+APYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEHEEDDDNTEEDD 165
            AY+K      D ESE+S+SE+NDEDEAS EE ++DDD+ EE+D
Sbjct: 121 DAYNKNLEEGSD-ESEKSRSEINDEDEASGEEEDDDDDDDEEED 161

[Close]

BLAST of CmoCh07G011010 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 172.9 bits (437), Expect = 2.2e-43
Identity = 119/181 (65.75%), Postives = 141/181 (77.90%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MK +KGK   K +KEALKPVDDRKVGKRKA   A+K  KR T+K+ KAKKDPNKPKR  S
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLEDFR  +K+ENPNVK+VSAVGKAGGQKWKS+SQ+E+APYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEH----------EEDDDNTEEDDDDNEED 172
            AY+K      D ESE+S+SE+NDEDEAS EE           EE+++  ++DDDD+EE+
Sbjct: 121 DAYNKNLEEGSD-ESEKSRSEINDEDEASGEEELLEKEAAGDDEEEEEEEDDDDDDDEEE 178

[Close]

BLAST of CmoCh07G011010 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 172.9 bits (437), Expect = 2.2e-43
Identity = 119/181 (65.75%), Postives = 141/181 (77.90%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MK +KGK   K +KEALKPVDDRKVGKRKA   A+K  KR T+K+ KAKKDPNKPKR  S
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLEDFR  +K+ENPNVK+VSAVGKAGGQKWKS+SQ+E+APYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 KAYDKKASAAEDEESERSKSEVNDEDEASEEEH----------EEDDDNTEEDDDDNEED 172
            AY+K      D ESE+S+SE+NDEDEAS EE           EE+++  ++DDDD+EE+
Sbjct: 121 DAYNKNLEEGSD-ESEKSRSEINDEDEASGEEELLEKEAAGDDEEEEEEEDDDDDDDEEE 178

[Close]

BLAST of CmoCh07G011010 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 167.5 bits (423), Expect = 9.1e-42
Identity = 118/185 (63.78%), Postives = 141/185 (76.22%), Query Frame = 0


Query: 1   MKGSKGKRTSKVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPSS 60
           MK +KGK   K +KEALKPVDDRKVGKRKA   A+K  KR T+K+ KAKKDPNKPKR  S
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEDFRKEYKRENPNVKSVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLM 120
           AFFVFLEDFR  +K+ENPNVK+VSAVGKAGGQKWKS+SQ+E+APYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 KAYDKKASAAEDEESERSKSEVNDEDEAS-------------EEEHEEDDDNTEEDDDDN 173
            AY+K      D ESE+S+SE+NDEDEAS             E+E   DD+  EE++DD+
Sbjct: 121 DAYNKNLEEGSD-ESEKSRSEINDEDEASGEVTIPLSNEELLEKEAAGDDEEEEEEEDDD 180

[Close]

BLAST of CmoCh07G011010 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-30
Identity = 88/140 (62.86%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 24  KVGKRKAAVKADK--GIKRPTKKDLKAKKDPNKPKRPSSAFFVFLEDFRKEYKRENPNVK 83
           K  K KA  ++ K    K+P K    A KDPNKPKRPSSAFFVF+EDFR  YK E+P  K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 84  SVSAVGKAGGQKWKSLSQSERAPYEAKAAKRKAEYEKLMKAYDKKASAA--EDEESERSK 143
           SV+AVGKAGG+KWKSLS SE+APY AKA KRK EYEK MKAY+KK      EDEES++S 
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSV 121

Query: 144 SEVNDEDEASEEEHEEDDDN 160
           SEVNDED+A +   EE+DD+
Sbjct: 122 SEVNDEDDAEDGSEEEEDDD 141

The following BLAST results are available for this feature:

BLAST of CmoCh07G011010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49595	3.1e-42	65.75	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P93047	3.9e-29	62.86	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49596	7.3e-28	53.42	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P40620	1.2e-27	54.09	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]
P26585	2.0e-25	53.37	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of CmoCh07G011010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F068	7.0e-74	100.00	high mobility group B protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114382...	[more]
A0A6J1HS33	5.5e-71	98.25	high mobility group B protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466235...	[more]
A0A0A0L1B2	2.8e-62	88.89	HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=...	[more]
A0A1S3BML2	4.0e-61	87.21	high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=3 SV=...	[more]
A0A6J1DBK9	2.4e-58	82.56	high mobility group B protein 1 OS=Momordica charantia OX=3673 GN=LOC111019485 P...	[more]

BLAST of CmoCh07G011010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931941.1	1.4e-73	100.00	high mobility group B protein 1-like [Cucurbita moschata] >XP_022931942.1 high m...	[more]
XP_022966604.1	1.1e-70	98.25	high mobility group B protein 1-like [Cucurbita maxima] >XP_022966605.1 high mob...	[more]
XP_023518849.1	4.3e-70	97.08	high mobility group B protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_011653690.1	5.7e-62	88.89	high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 high mobility ...	[more]
XP_038883904.1	9.7e-62	87.86	high mobility group B protein 1 [Benincasa hispida] >XP_038883905.1 high mobilit...	[more]

BLAST of CmoCh07G011010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51880.4	3.6e-46	70.73	high mobility group B1	[more]
AT3G51880.1	2.2e-43	65.75	high mobility group B1	[more]
AT3G51880.3	2.2e-43	65.75	high mobility group B1	[more]
AT3G51880.2	9.1e-42	63.78	high mobility group B1	[more]
AT1G20696.1	2.7e-30	62.86	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 113..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	PANTHER	PTHR46261:SF1	HIGH MOBILITY GROUP B PROTEIN 1	coord: 1..162
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 55..121 e-value: 4.65457E-14 score: 61.4897
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 54..125 e-value: 2.1E-26 score: 103.7
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 55..123 e-value: 2.0E-22 score: 79.3
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 55..124 score: 19.680683
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 50..128 e-value: 3.1E-25 score: 90.5
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 47..126
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G011010.1	CmoCh07G011010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin