CmoCh07G010980 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G010980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	30S ribosomal protein S31, chloroplastic-like
Location	Cmo_Chr07: 5746107 .. 5747765 (-)
RNA-Seq Expression	CmoCh07G010980
Synteny	CmoCh07G010980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCCGTCACGGTCTCCACTCGAAACTTATCTTCGTGATTCTCTCACAGACGCTCTCGTTCACTCTGCTTCATCTTCATCCGTCCATGGCTTCACTTCCTTTCGGACTTCTTCAGGCAACATTTCAATCTCCTACTCTTTCTCCTCGTTGTTTCTCCTTCTCCAAATCCGAAACCCTAGGAACCTCTCTGCGTACTTCTACTGGAACCTCTGCAACTTCCTCGCCTTCTTCAATTCCCGCCGGTATGCATTTGTTACCTTCTTTTGTACTGTTCACCTTCAATCGATTGATTTTTGTTCTATTTTTGCTTTTTTAGTGTATTGTGGCAGAGGCGATAAGAAGACGGAGAAAGGAAAGCGGTTCAAACACTCATTCGGAAATGTATTTGTCTTTACTCCCTCTTTTCTTTGTTCGTTCGACTTTCCTTTGTTCTCATTTGATTTTTTTGGGGAAAAACGTTCAGGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACACCAAGAGTACCAACTCCACCTTCTCCGCCTAGAAAGGATAAGTTTGACGACGATGAGAAAATCAAGATCGAAATCGACGAGTCTCTTTTCTCTCGCTAGTCAAGGAGCAGCCTAGTTCTGTTTGTTTGTTTGAAATTTGTTTTCTAAATCCAGAAGGTACCTCCGCTTCTTATATTCGCAATATTTTTGTATGAATTCTTCAGTTGTTTGCTTTCTCAGTCTACTCGAAGTATGTACTCTCTCCCTTTCTCTTGCTTTTGACCTTTTCGGAGCTAAACTCCGACTATTGATGCTTCATAGGTGATCTTTGCGTCATTAGCAGGCAATTGTTGAAATATATGTTTGCTTCCTCCTCCATGTTATCGAAGGCACTAGAGTTGAGCTATTCTAGACCAACGTTAGATACAAAAAGAATCTACTAGCTCCTTTCTGGTTTTACGAATTTCTTTCCGATTGTTGCCGTTGTATGGAAGCGTCAATTGCTTGTTTATCTACAAAGTTTTAAGCGGACTTTGGGAAGATTTATCCAAAATTTTCTCTGTAATAGGCTAATACGGATCACTTACTTTAATGACTACATAACCGTAAAAATATAAGCTCCAATTGGAGCATTGTTCATCCGATGGTTGATCACTTCACTTCGCAATCATTGAACTAAAAACAAAAAAAAGTTACAGAAATATAGACAAAAAGTAGTTGCGTAGCGTCCTTGGATAGGCTGTTTTCTACTACAAAATAAACTATTTTTCTTAACTCAATTTCAGCCACCTATGTTGCCTTTTATTCTGAATGTTTTGGAGGTTCTACCGTCTCTCTACAAAGAGAGTTTCTCCTGATGTCAACCAAAGCCTTTTATTGTCAATGCCAAGGGTAACTGAAGAGGAGGAGGAAGAAGAAGAGGTACCTAGGTTTATTGGCCCAGAAGACCAAAAAGGAAGGAATCCGACAAATGCTTGAGTCCCAGTTAGTTACTCTTCTTCTGCATCTTCATGTTCTTCCTCCTCCTCCTCTGTATCATCTTCATGTTCCTCCTCCTCTGCATCATCTTTAAGAAGCAGTAGTTTAGTTTACTAGACTTGATGAAAGAAGGAAACACCTCTCTCAGTAGATTTATATGACATGAGTAGCTCAATAAGGGTTGGCAAAAGTCGATGACTGGG

mRNA sequence

AATCCGTCACGGTCTCCACTCGAAACTTATCTTCGTGATTCTCTCACAGACGCTCTCGTTCACTCTGCTTCATCTTCATCCGTCCATGGCTTCACTTCCTTTCGGACTTCTTCAGGCAACATTTCAATCTCCTACTCTTTCTCCTCGTTGTTTCTCCTTCTCCAAATCCGAAACCCTAGGAACCTCTCTGCGTACTTCTACTGGAACCTCTGCAACTTCCTCGCCTTCTTCAATTCCCGCCGTGTATTGTGGCAGAGGCGATAAGAAGACGGAGAAAGGAAAGCGGTTCAAACACTCATTCGGAAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACACCAAGAGTACCAACTCCACCTTCTCCGCCTAGAAAGGATAAGTTTGACGACGATGAGAAAATCAAGATCGAAATCGACGAGTCTCTTTTCTCTCGCTAGTCAAGGAGCAGCCTAGTTCTGTTTGTTTGTTTGAAATTTGTTTTCTAAATCCAGAAGGTACCTCCGCTTCTTATATTCGCAATATTTTTGTATGAATTCTTCAGTTGTTTGCTTTCTCAGTCTACTCGAAGTATGTACTCTCTCCCTTTCTCTTGCTTTTGACCTTTTCGGAGCTAAACTCCGACTATTGATGCTTCATAGGTGATCTTTGCGTCATTAGCAGGCAATTGTTGAAATATATGTTTGCTTCCTCCTCCATGTTATCGAAGGCACTAGAGTTGAGCTATTCTAGACCAACGTTAGATACAAAAAGAATCTACTAGCTCCTTTCTGGTTTTACGAATTTCTTTCCGATTGTTGCCGTTGTATGGAAGCGTCAATTGCTTGTTTATCTACAAAGTTTTAAGCGGACTTTGGGAAGATTTATCCAAAATTTTCTCTGTAATAGGCTAATACGGATCACTTACTTTAATGACTACATAACCGTAAAAATATAAGCTCCAATTGGAGCATTGTTCATCCGATGGTTGATCACTTCACTTCGCAATCATTGAACTAAAAACAAAAAAAAGTTACAGAAATATAGACAAAAAGTAGTTGCGTAGCGTCCTTGGATAGGCTGTTTTCTACTACAAAATAAACTATTTTTCTTAACTCAATTTCAGCCACCTATGTTGCCTTTTATTCTGAATGTTTTGGAGGTTCTACCGTCTCTCTACAAAGAGAGTTTCTCCTGATGTCAACCAAAGCCTTTTATTGTCAATGCCAAGGGTAACTGAAGAGGAGGAGGAAGAAGAAGAGGTACCTAGGTTTATTGGCCCAGAAGACCAAAAAGGAAGGAATCCGACAAATGCTTGAGTCCCAGTTAGTTACTCTTCTTCTGCATCTTCATGTTCTTCCTCCTCCTCCTCTGTATCATCTTCATGTTCCTCCTCCTCTGCATCATCTTTAAGAAGCAGTAGTTTAGTTTACTAGACTTGATGAAAGAAGGAAACACCTCTCTCAGTAGATTTATATGACATGAGTAGCTCAATAAGGGTTGGCAAAAGTCGATGACTGGG

Coding sequence (CDS)

ATGGCTTCACTTCCTTTCGGACTTCTTCAGGCAACATTTCAATCTCCTACTCTTTCTCCTCGTTGTTTCTCCTTCTCCAAATCCGAAACCCTAGGAACCTCTCTGCGTACTTCTACTGGAACCTCTGCAACTTCCTCGCCTTCTTCAATTCCCGCCGTGTATTGTGGCAGAGGCGATAAGAAGACGGAGAAAGGAAAGCGGTTCAAACACTCATTCGGAAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACACCAAGAGTACCAACTCCACCTTCTCCGCCTAGAAAGGATAAGTTTGACGACGATGAGAAAATCAAGATCGAAATCGACGAGTCTCTTTTCTCTCGCTAG

Protein sequence

MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR

Homology

[Close]

BLAST of CmoCh07G010980 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-28
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 24  SFSKSETLGTSLR--TSTGTSATSSPSSIPAVYCGRGDKKTEKGKRFKHSFGNARPRDKT 83
           S S SET G SL   T   + +TSS SSIP VYCGRGD+KT KGKRF HSFGNARPR+K+
Sbjct: 22  SSSHSETAGVSLSCFTHQFSLSTSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNKS 81

Query: 84  KGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 118
           KGRG  RVP PP+PPRKDKF++DEKIKI+IDESLFS
Sbjct: 82  KGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFS 117

[Close]

BLAST of CmoCh07G010980 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 23  FSFSKSETL-GTSLRTSTGTSATSSPSSIPA---VYCGRGDKKTEKGKRFKHSFGNARPR 82
           FSFS S+++ G SL +    S +SS S+ PA   +YCGRGD+KT KGKRF HSFGNARP+
Sbjct: 18  FSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRKTAKGKRFNHSFGNARPK 77

Query: 83  DKTKGRGTPRVPTPPSPPRKDKFD 103
           +K KGRG P+ P  P      K D
Sbjct: 78  NKNKGRGPPKAPIFPKGDPSQKED 101

[Close]

BLAST of CmoCh07G010980 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-05
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 52 AVYCGRGDKKTEKGKRFKHSFGNARP-RDKTKGRGTPRVPTPPSPP 97
          AV CGRGDKKT++GKRFK S+GNARP R+K   R   RV  P S P
Sbjct: 29 AVTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTP 74

[Close]

BLAST of CmoCh07G010980 vs. ExPASy TrEMBL
Match: A0A6J1HRX4 (30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466195 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.1e-57
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK 60
           MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK 60

Query: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 119
           KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR
Sbjct: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 118

[Close]

BLAST of CmoCh07G010980 vs. ExPASy TrEMBL
Match: A0A6J1EV33 (30S ribosomal protein S31, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438171 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.1e-57
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK 60
           MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK 60

Query: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 119
           KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR
Sbjct: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 118

[Close]

BLAST of CmoCh07G010980 vs. ExPASy TrEMBL
Match: A0A6J1DDL3 (30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019400 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST---GTSATSSPSSIPAVYCGR 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST    TSATSSPSS+PAVYCGR
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 111

Query: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 119
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPTPP+PPRKDKF+DDEKIKIEID+SLF+
Sbjct: 112 GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLFA 171

[Close]

BLAST of CmoCh07G010980 vs. ExPASy TrEMBL
Match: A0A5A7TU27 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00930 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.3e-44
Identity = 100/121 (82.64%), Postives = 106/121 (87.60%), Query Frame = 0


Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GTSATSSPSSIPAVYCG 60
           M SLPFGLLQA  QSP+L+P  FSFSKSETLGTSLR S+      S  SSPSSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 118
           RGDKKTE+GKRF HS+GNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of CmoCh07G010980 vs. ExPASy TrEMBL
Match: A0A1S3BL51 (30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.3e-44
Identity = 100/121 (82.64%), Postives = 106/121 (87.60%), Query Frame = 0


Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GTSATSSPSSIPAVYCG 60
           M SLPFGLLQA  QSP+L+P  FSFSKSETLGTSLR S+      S  SSPSSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 118
           RGDKKTE+GKRF HS+GNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of CmoCh07G010980 vs. NCBI nr
Match: XP_022931892.1 (30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata] >XP_022966545.1 30S ribosomal protein S31, chloroplastic [Cucurbita maxima] >KAG6595386.1 30S ribosomal protein S31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027394.1 30S ribosomal protein S31, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.2 bits (583), Expect = 1.9e-56
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK 60
           MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK 60

Query: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 119
           KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR
Sbjct: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 118

[Close]

BLAST of CmoCh07G010980 vs. NCBI nr
Match: XP_023517799.1 (30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.9 bits (577), Expect = 9.3e-56
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK 60
           MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTG SATSSPSSIPAVYCGRGDK
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGISATSSPSSIPAVYCGRGDK 60

Query: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 119
           KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR
Sbjct: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 118

[Close]

BLAST of CmoCh07G010980 vs. NCBI nr
Match: XP_022151467.1 (30S ribosomal protein S31, chloroplastic [Momordica charantia])

HSP 1 Score: 201.8 bits (512), Expect = 3.2e-48
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST---GTSATSSPSSIPAVYCGR 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST    TSATSSPSS+PAVYCGR
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 111

Query: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 119
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPTPP+PPRKDKF+DDEKIKIEID+SLF+
Sbjct: 112 GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLFA 171

[Close]

BLAST of CmoCh07G010980 vs. NCBI nr
Match: XP_038882305.1 (30S ribosomal protein S31, chloroplastic [Benincasa hispida])

HSP 1 Score: 193.7 bits (491), Expect = 8.7e-46
Identity = 104/121 (85.95%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GTSATSSPSSIPAVYCG 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR S+     TS TSSPSSIPAVYCG
Sbjct: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASSTASLATSTTSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 118
           RGDKKTEKGKRF  S+GNARPR+KTKGRGTPRVPTPPSPPRKDKF+DDEKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFNRSYGNARPRNKTKGRGTPRVPTPPSPPRKDKFEDDEKIKIEIDESLF 120

[Close]

BLAST of CmoCh07G010980 vs. NCBI nr
Match: XP_008449316.1 (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYJ96295.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 4.8e-44
Identity = 100/121 (82.64%), Postives = 106/121 (87.60%), Query Frame = 0


Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GTSATSSPSSIPAVYCG 60
           M SLPFGLLQA  QSP+L+P  FSFSKSETLGTSLR S+      S  SSPSSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 118
           RGDKKTE+GKRF HS+GNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of CmoCh07G010980 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 125.6 bits (314), Expect = 2.7e-29
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 24  SFSKSETLGTSLR--TSTGTSATSSPSSIPAVYCGRGDKKTEKGKRFKHSFGNARPRDKT 83
           S S SET G SL   T   + +TSS SSIP VYCGRGD+KT KGKRF HSFGNARPR+K+
Sbjct: 22  SSSHSETAGVSLSCFTHQFSLSTSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNKS 81

Query: 84  KGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 118
           KGRG  RVP PP+PPRKDKF++DEKIKI+IDESLFS
Sbjct: 82  KGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFS 117

[Close]

BLAST of CmoCh07G010980 vs. TAIR 10
Match: AT2G21290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 6.8e-04
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 28 SETLGTSLRTSTGTSATSSPSSIPAVYCGRGDKKTEKGKRFKHSFGNAR-PRDKTKGRGT 87
          S  L  S R S+ + A ++P+      CGRGDKKT+KGKRFK S+GN+R  + K   R  
Sbjct: 21 SAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKRFKGSYGNSRGKKQKMIERIK 80

Query: 88 PRVPTPPSPP 97
           ++  P S P
Sbjct: 81 DKLELPRSTP 90

The following BLAST results are available for this feature:

BLAST of CmoCh07G010980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80439	3.8e-28	71.88	30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3...	[more]
P47910	1.3e-12	53.57	30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P...	[more]
P47909	3.5e-05	63.04	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of CmoCh07G010980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HRX4	9.1e-57	100.00	30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1EV33	9.1e-57	100.00	30S ribosomal protein S31, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1DDL3	1.6e-48	87.60	30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7TU27	2.3e-44	82.64	30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BL51	2.3e-44	82.64	30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228...	[more]

BLAST of CmoCh07G010980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931892.1	1.9e-56	100.00	30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata] >XP_022966545...	[more]
XP_023517799.1	9.3e-56	99.15	30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022151467.1	3.2e-48	87.60	30S ribosomal protein S31, chloroplastic [Momordica charantia]	[more]
XP_038882305.1	8.7e-46	85.95	30S ribosomal protein S31, chloroplastic [Benincasa hispida]	[more]
XP_008449316.1	4.8e-44	82.64	PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1...	[more]

BLAST of CmoCh07G010980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38140.1	2.7e-29	71.88	plastid-specific ribosomal protein 4	[more]
AT2G21290.1	6.8e-04	42.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030826	30S ribosomal protein	TIGRFAM	TIGR04560	TIGR04560	coord: 56..80 e-value: 3.2E-9 score: 34.6
IPR030826	30S ribosomal protein	PFAM	PF17067	RPS31	coord: 20..99 e-value: 2.1E-30 score: 104.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..85
None	No IPR available	PANTHER	PTHR34550:SF2	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..117
IPR044695	30S ribosomal protein S31, plant	PANTHER	PTHR34550	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G010980.1	CmoCh07G010980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding