CmoCh07G010880 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh07G010880
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr07: 5662909 .. 5664922 (+)
RNA-Seq ExpressionCmoCh07G010880
SyntenyCmoCh07G010880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCCAAAATTAAATCGTTATGCAATAAATGTAACATGCCAGGTAATAGCTTGTGCATATTTAATTAAAATGCCTGAATTTGAACTTAAATAGTACAATTTTCATTAATTATTTCCAAATGATACTCAAATTATTAAACTTCCCGATATAATTTTAGTCTTCCAATAAAGAGATATCTATTTTATTTGAACGGGAAAGAGATTTTCTATTTAGACAGAGAATGAGGGAGGGAGTGGGAAAATTTATTTTTTTCATTAAAATAAATAGGGTCAGAGACGAGATTATATTCTCTGTCCTCATCCCCACCCGCTTAATATAAATATATTTTCAACACACACGTGCATGTATGTGTGTATATATATATACTATTTGGCTATATTAAAAAATATTTAATTTTGGGACTCTAATGGTAATATTTAAACTAAATACGTACATCTTTTTTTTTTTATTATTAAAAACTATGTTGTAATATTATATACGTTTGATTATGAAATAGATTGATTTTATTAAGATTTGTTTTGTTAATTTTTTAATAAATATTATATTAAAAAATAAAAAACTTTAAACAACTATTTTTAGAAAAAATAACAAATGGATTCTCACAAAAATAAATAAATTTTTTTGCCGAACGGAGTACGAAATAGGTGATGAGGATGAAGATGATACCAATATTTATTATTTTTACAAAAATATAAGACTTTATTTTTACTATTATTATTATTATTATATATATATATATATTTATTTTGTTGAACAATATATGAAATTATTCATGCAACAGAGGTCTACAGGTTGGTGTAATATTATTCAGATTACATATTATTCTAAAATAATTTTGAACTTCATTATTATCATCCATAAATATATTTAATTTATTAAAAAAAAAATAATAATAACCCCAATACAATTAAATGAACTGTCACACATCACCTATTTACCACGAATATTTACAGAATTACTTTAGTTTGATAAATAGTTACAAATTTAGTAATTTTCCTCACAGTGTTCACAATGTATATTTAGTTATTTTATTTGATGTGATTAAAGTATATTTTTAATTTATTAAAATAAATGTCAGGCATTTATTTATTTATTTGTAGAGAGTCCACCCTTCAAATTTTAATTTAATTCAATTATTTATAATTATTACAAGTAATTTTGGATTTTAATTTGTTGGGTAAAATTCTATTTATTGTTAGAATAAAAGGAAAAAAAAAATGGAAAAAATGATATAATTATAAATAATTTTTGATTCGTTCATCTTTTTGCTCCCACGTTCGTCTCTCTCTCTTGCCCGTGACATTGATTAGTTTCATCTTCTTTTTCTTTCTTTTTCTTTCTTTCTTTCCCTCCTCTCTCTATTTTTTTCACTCTCATTTCTCTTCTCTTCTCTTCTTAGGGTTTCGAATGCGACTTCTATTGGCCGGTGAGGTCAATTATGTAGGTTTTCTTGTCTTTGATTTTCCATGCCACTGTTTTCTCTGAAATTATTTTCGACTACGGCTTGCTGGATTTCTGCTTTCCGGCGTCTTCGCGTTCTTGCTTTCTGCCACTGTCTTCTTCAACCTTGCGTTGGTGGATCGTAGTTTCGGCAGGGATTGGCAGTCGATTGCAATTGCCTGCCGAGGTTTGATTCTTTCGTTGTTTTTCTTTCTCTTTTTGTTCTTTTATTCTTGGGTTGTTGCGTATGTGTGTGTGTGTGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTAGCTTAAGTGCTGCCAATTTGCAGAATAGAAGCGTCGGGAGTACGGGATTTTGCTTCCCTTCAGGTTGTTTGATTAGCTAGGGTTGCGGGTTTCGTTCTGCGAGTAATGCGGTTCGTTGTTGTTGTTTTTTACTTGAGAAGCTTGTAGTCGAAATGGTTGTAATTTCGTGTTGTTTGGGTTTTTTTTTGGACTTGCAGGGTTGTTTTGAATATTGGGTTACCAGTGAAGTTCACGACTTTCCAGTGTTTGAGGAATTGTGA

mRNA sequence

ATGTTGCCAAAATTAAATCGTTATGCAATAAATGTAACATGCCAGGTTTTCTTGTCTTTGATTTTCCATGCCACTGTTTTCTCTGAAATTATTTTCGACTACGGCTTGCTGGATTTCTGCTTTCCGGCGTCTTCGCGTTCTTGCTTTCTGCCACTGTCTTCTTCAACCTTGCGTTGGTGGATCGTAGTTTCGGCAGGGATTGGCAGTCGATTGCAATTGCCTGCCGAGAATAGAAGCGTCGGGAGTACGGGATTTTGCTTCCCTTCAGTCGAAATGGTTGTAATTTCGTGTTGTTTGGGTTTTTTTTTGGACTTGCAGGGTTGTTTTGAATATTGGGTTACCAGTGAAGTTCACGACTTTCCAGTGTTTGAGGAATTGTGA

Coding sequence (CDS)

ATGTTGCCAAAATTAAATCGTTATGCAATAAATGTAACATGCCAGGTTTTCTTGTCTTTGATTTTCCATGCCACTGTTTTCTCTGAAATTATTTTCGACTACGGCTTGCTGGATTTCTGCTTTCCGGCGTCTTCGCGTTCTTGCTTTCTGCCACTGTCTTCTTCAACCTTGCGTTGGTGGATCGTAGTTTCGGCAGGGATTGGCAGTCGATTGCAATTGCCTGCCGAGAATAGAAGCGTCGGGAGTACGGGATTTTGCTTCCCTTCAGTCGAAATGGTTGTAATTTCGTGTTGTTTGGGTTTTTTTTTGGACTTGCAGGGTTGTTTTGAATATTGGGTTACCAGTGAAGTTCACGACTTTCCAGTGTTTGAGGAATTGTGA

Protein sequence

MLPKLNRYAINVTCQVFLSLIFHATVFSEIIFDYGLLDFCFPASSRSCFLPLSSSTLRWWIVVSAGIGSRLQLPAENRSVGSTGFCFPSVEMVVISCCLGFFLDLQGCFEYWVTSEVHDFPVFEEL
Homology
[Close]
BLAST of CmoCh07G010880 vs. NCBI nr
Match: KAG6595375.1 (hypothetical protein SDJN03_11928, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-42
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MLPKLNRYAINVTCQVFLSLIFHATVFSEIIFDYGLLDFCFPASSRSCFLPLSSSTLRWW 60
          MLPKLNRYAINVTCQVFLSLIFHATVF+EIIFDYGLLDFCFPASSRSCFLPLSSSTLRWW
Sbjct: 1  MLPKLNRYAINVTCQVFLSLIFHATVFAEIIFDYGLLDFCFPASSRSCFLPLSSSTLRWW 60

Query: 61 IVVSAGIGSRLQLPAENRSVGSTGFCFPS 90
          IVVSAGIGSRLQLPAENRSVGSTGFCFPS
Sbjct: 61 IVVSAGIGSRLQLPAENRSVGSTGFCFPS 89

[Close]
BLAST of CmoCh07G010880 vs. NCBI nr
Match: KAG7027382.1 (hypothetical protein SDJN02_11394, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.5 bits (389), Expect = 6.3e-34
Identity = 80/112 (71.43%), Postives = 82/112 (73.21%), Query Frame = 0 

Query: 15  QVFLSLIFHATVFSEIIFDYGLLDFCFPASSRSCFLPLSSSTLRWWIVVSAGIGSRLQLP 74
           +VFLSLIFHATVF+EIIFDYGLLDFCFPASSRSCFLPLSSSTLRWWIVVSAGIGSRLQLP
Sbjct: 8   EVFLSLIFHATVFAEIIFDYGLLDFCFPASSRSCFLPLSSSTLRWWIVVSAGIGSRLQLP 67

Query: 75  AENRSVGSTGFCFPSVEMVVISCCLGFFLDLQGCFEYWVTSEVHDFPVFEEL 127
           AE                              GCFEYWVTSEVHDFPVFEEL
Sbjct: 68  AE------------------------------GCFEYWVTSEVHDFPVFEEL 89

The following BLAST results are available for this feature:
BLAST of CmoCh07G010880 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh07G010880 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh07G010880 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595375.12.2e-4298.88hypothetical protein SDJN03_11928, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7027382.16.3e-3471.43hypothetical protein SDJN02_11394, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh07G010880 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G010880.1CmoCh07G010880.1mRNA