CmoCh07G010250 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh07G010250
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionATP synthase
LocationCmo_Chr07: 5068922 .. 5072416 (+)
RNA-Seq ExpressionCmoCh07G010250
SyntenyCmoCh07G010250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATGGAATCAACCCAAGAGAAAGTATGAAATGGATTACCTTGATGATCAAGATCAAGAATAAATAAAACTCGTGATTTGAATCACTCCCCAAGAGGTTTAATCAATACCACTTGAATGACTATAACATGCAAATTCTAAACACAAAAATTCTCATAACCTCCATATTAAAATGGCTAGTTAATGGTGGAATATGGTAATCTAAGTGGGTTACAATATAACCTTAAGTCTTAGGTGAAATATAACACACAAATATTTAAATTATAATTAAATAGTGCAATGAATGAATGTGCTTATTAGTCCTCTTTTGACGAGTTTCATAAATTTAGCTGAGTTCATTAAATGCATTTCTCTCTTGAAGCTCAACTTTGCACAAAATATAAGGGAGGTCTTCAACGTCTTATAGATTTTTCTTTGATGAGCTCACCATAACTTGAATATAAGTGTACGAGGTTTATTGTAGCTTATTGGCTCTCGTTCATGTAATTGGACCTTGAGGGACGTAAATTTCTTGGTTGTAGTTCATATCACTTGATTTCCAAAGAAAAATAAACGACCCAAAAAACAAGAAAAATTTAGGCTAATTAGAACATAACTCATTAGATAAGACATTAATTATTATTTTAGAAGTTAAAATCGGGACTTCAATATAATTAAATTTTTAAAAAATAAAATTAAAATAACGAAAATTTAGAGTAGAAAATTACATATATAACCAGCTTAATTTTCCAAAGAACATGATTGATGGGCTTGATATGTTAATTAAAAAGGAGTTCAAATTTTATTTTAAAATTCTAATAATTGTGATGAAAATGTATAGAAATATACATAAATTACAAACCGTTGACTTTGAATGAAATTTGGAAATATTAAGGATGTATAAGTGGTGTCTGTTTCACTCTTAATTGGATCAACTTATTTGACTCTACTCGCCAATCAAACTTACCAAGATACGCCTTTGACTTTTCAACGGCATGGCCCACTTAATGAATATATTCCATTCAAAAACATTTTTTATAAATAAATAAATAAATATGAGATAAATTTTTTATTTTTCCCTAAATTTATCGAGTTTTATTAGGAGATTAAAAATATTTTCATAAAATTATTCTAGACTGATGATTTTATAAAAATAAAAGAAATTATTTATAAGAATTTATTAATCCAATTTTTTTTTTTAACTATAGAAGTTGAATTTTAATTTTTTTTTTTCATATAAGAATTTGGAAAAAAAAATGAAAAAAAAAACTATTTTGTATTATTAACTATAAATTTAATAAGCCATTTTGGACAACAATACGGGTTTAAGATAAATAAATTAAAAAATCTGGCGTCGCCCGGACTCGAACCGGAGACCTTCAGTGTGTTAGACTGACGTGATAACCAACTACACCACGACACCATTTTGTTCTTTTCAAATTTACTTTTAATTAATTATTGTAATTCTAAAATCATATTCAATTTTATTAAGAAGTAACTATTCGATCCATTGGTAAATTAAATTTTTATTTATTTTTCAATAATATCTCATTCTTTTTTACCACAGACGGATTCGTTGAAGCCATTGAATTAGGTAAAGTCGACCTTATAAATATAATAATAATAATATATTCTACTTGAATTTGGTAAAACCGACCTTTTTTTTTATTAAGTAAAAATTCAAAGTTTCAAACTTTTAGTCAAAATGGTCGTATTTGTTTTTCAATATATCAATTTTGTGCTAATTTTTTTTTGTTGGTAAAAAATAACTCGAATTTATGAATATTATAATATTAAAAAAAAAAATCTTATTCTTTAAGATTTCTCTTTATTAATATTTAGATAATTGAATTAAACAGACTGTAGAGCAACCTTCTAAATTTAGTTTTTAAATACTTTAAAGTTTAAATTAATTAATCAATTACCTTTACAAAAATACTATTATTATTATTGGTTTAAATTATTTAGTAAAGAAATTGATAAGAATAAGGACAAAATTAAAAATTACCCGACATTCAAAATACTTGGGCCAATTATTTAAAATAGTTTTGGACATCAGCTTGGGCTTGGCCCAGTTGTAATTTTGGGTTCTTGAAAGCAAGCCCATTAAGATTTATATGGGCCGAGCCTTTTCAGTCCTCCTCTCTTTATAAACAAGCAAGATCTGAGCGAAGAAATCCCCGTTTACATTTGCGAAAGAGAATCGAGACGACGAACGCAGACAGTCGAAGGAAGATGAGGAAGTTCGATCCATGGCCGGTGTTTTTCAGGCGAGAGTGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACTGGGGCCCTTATTACCAAGATGACCGCCGGACTTTCTGGTATGATGATCGATTTTTTTTTTTTTTTTTGTGGATTGAATTCGATTCCTTTACTTCTAATTGTGTTGATCCTTGTGACGTTTGATTTTCAGAGGAAGAGGTGAAGCAGTCTCCTTTCTACAAGAGGCACAATCGGTATTTTCTCGGAACCCTAATTTACTATCCCACGCCCCGCACTTTTGATTTGCAAATGAATGAAATCTAGTGTCCGATACAATTTCGATTTGTGGTTTTCGTCTGATAAGTTATGAATCGTTAATGAGAATTGTACATTTTATCACTTGTTTTCTTTCTTTTTGAATCGGGGTTGTTTATATTTATTGAGTGTGGTTGTGGTAAAGACTGGCATAGATTGTTTATGTGCATGTATTGCTTGCTGATTTTTCTTCGATGACCATCCAGATATGTCATCGTAGTTTCTTTCTTTGGGAGTATACTTTTTAATTTTCCCATTTGATTGGAAGGCGATTTTAGAGGAAGGCTAAACATCCATCATGCGTAGTCCAAAATCATCTGTAGGAAGGAATGAAAAGAGGGTAACTCAATTTTGACAGTAATCTGAAAGCTATTAGACTTATTACGCTTATTTCCTTTTCTTCACATATGTTCCAAAGTTTGTGGAATATATGCATTTTGCGTAGATGTTATTATACAAATCACGTCTCTTGGCTATGTTCATATTCCAGAAATTCGTAGTTGGGTATTGTTGATTTCACGGATGAGATATGTATTTGGTTTTCCAATTTTTATTCTCTATCCTTTCCCCTTTATGGCGATTGTTGGTCTCTAGAACTTAGGAATGTGCTTGACAAGTTAATACTCTGGCTGCTGCAGGTGATATCTTAAAGGGGAATTGGTGCTACTTCAAAATGAGATGTTTTATTTGTTCAAAATAACAGATGCTGCGGTTAGTTTACAAGCCATATTTGAAGCAAGCTTTATCGGTACTTCTCAGTATGTATCAAACTTGAAAGATTTTGTGATGTTTACTTTTTATTTGTAGTTGAATTCCTTCTCGTAGCATCAATGGATTGAAAAATTTGAACATCTGGTTGACTTGCTGCTTTAATTCAAAATGGTTGAACTTGTTCACACCTTTTCTGATTAGTACTTCGTCGTCTTCGGGACTCTCTAACTCTCATCTTGACTAATCTCTTC

mRNA sequence

ATGATATGGAATCAACCCAAGAGAAAACAGTCGAAGGAAGATGAGGAAGTTCGATCCATGGCCGGTGTTTTTCAGGCGAGAGTGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACTGGGGCCCTTATTACCAAGATGACCGCCGGACTTTCTGAGGAAGAGGTGAAGCAGTCTCCTTTCTACAAGAGGCACAATCGGTGATATCTTAAAGGGGAATTGGTGCTACTTCAAAATGAGATGTTTTATTTGTTCAAAATAACAGATGCTGCGGTTAGTTTACAAGCCATATTTGAAGCAAGCTTTATCGGTACTTCTCAGTATGTATCAAACTTGAAAGATTTTGTGATGTTTACTTTTTATTTGTAGTTGAATTCCTTCTCGTAGCATCAATGGATTGAAAAATTTGAACATCTGGTTGACTTGCTGCTTTAATTCAAAATGGTTGAACTTGTTCACACCTTTTCTGATTAGTACTTCGTCGTCTTCGGGACTCTCTAACTCTCATCTTGACTAATCTCTTC

Coding sequence (CDS)

ATGAGGAAGTTCGATCCATGGCCGGTGTTTTTCAGGCGAGAGTGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACTGGGGCCCTTATTACCAAGATGACCGCCGGACTTTCTGAGGAAGAGGTGAAGCAGTCTCCTTTCTACAAGAGGCACAATCGGTGA

Protein sequence

MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR
Homology
BLAST of CmoCh07G010250 vs. ExPASy Swiss-Prot
Match: P80497 (ATP synthase 6 kDa subunit, mitochondrial (Fragment) OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.5e-06
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGF 26
          MR+FDPWPVFFRREW RN PFLV F
Sbjct: 1  MRQFDPWPVFFRREWSRNQPFLVXF 25

BLAST of CmoCh07G010250 vs. ExPASy TrEMBL
Match: A0A6J1I9K7 (uncharacterized protein LOC111471274 OS=Cucurbita maxima OX=3661 GN=LOC111471274 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 55

BLAST of CmoCh07G010250 vs. ExPASy TrEMBL
Match: A0A6J1HGT1 (uncharacterized protein LOC111463349 OS=Cucurbita moschata OX=3662 GN=LOC111463349 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 55

BLAST of CmoCh07G010250 vs. ExPASy TrEMBL
Match: A0A5A7SNJ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00070 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.4e-22
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITGA ITKMTAG SEEEVK SPF +RHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGAAITKMTAGFSEEEVKNSPFVQRHNR 55

BLAST of CmoCh07G010250 vs. ExPASy TrEMBL
Match: A0A1S3BIW2 (uncharacterized protein LOC103490081 OS=Cucumis melo OX=3656 GN=LOC103490081 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.4e-22
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITGA ITKMTAG SEEEVK SPF +RHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGAAITKMTAGFSEEEVKNSPFVQRHNR 55

BLAST of CmoCh07G010250 vs. ExPASy TrEMBL
Match: A0A0A0KZI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G294910 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-22
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITG+LITKMTAG +EEEVK SPF +RHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 55

BLAST of CmoCh07G010250 vs. NCBI nr
Match: XP_022963015.1 (uncharacterized protein LOC111463349 [Cucurbita moschata] >XP_022972765.1 uncharacterized protein LOC111471274 [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 6.8e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 55

BLAST of CmoCh07G010250 vs. NCBI nr
Match: KAG7027319.1 (hypothetical protein SDJN02_11331 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.2 bits (308), Expect = 6.8e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 55

BLAST of CmoCh07G010250 vs. NCBI nr
Match: XP_023517883.1 (uncharacterized protein LOC111781491 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.9 bits (307), Expect = 8.8e-25
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFA+TGALITKMTAGLSEEEVKQSPFYKRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAVTGALITKMTAGLSEEEVKQSPFYKRHNR 55

BLAST of CmoCh07G010250 vs. NCBI nr
Match: XP_038881285.1 (uncharacterized protein LOC120072840 [Benincasa hispida])

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITG LITKMTAGLSEEEVK SPF +RHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGTLITKMTAGLSEEEVKNSPFVQRHNR 55

BLAST of CmoCh07G010250 vs. NCBI nr
Match: XP_008447675.1 (PREDICTED: uncharacterized protein LOC103490081 [Cucumis melo] >KAA0032622.1 uncharacterized protein E6C27_scaffold184G00070 [Cucumis melo var. makuwa] >TYK23504.1 uncharacterized protein E5676_scaffold500G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 7.0e-22
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITGA ITKMTAG SEEEVK SPF +RHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGAAITKMTAGFSEEEVKNSPFVQRHNR 55

BLAST of CmoCh07G010250 vs. TAIR 10
Match: AT3G46430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59613.2); Has 51 Blast hits to 51 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.0 bits (232), Expect = 4.1e-20
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAGL+EE+ K S F ++H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

BLAST of CmoCh07G010250 vs. TAIR 10
Match: AT5G59613.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 94.0 bits (232), Expect = 4.1e-20
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAGL+EE+ K S F ++H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

BLAST of CmoCh07G010250 vs. TAIR 10
Match: AT5G59613.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). )

HSP 1 Score: 94.0 bits (232), Expect = 4.1e-20
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAGL+EE+ K S F ++H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P804971.5e-0684.00ATP synthase 6 kDa subunit, mitochondrial (Fragment) OS=Solanum tuberosum OX=411... [more]
Match NameE-valueIdentityDescription
A0A6J1I9K73.3e-25100.00uncharacterized protein LOC111471274 OS=Cucurbita maxima OX=3661 GN=LOC111471274... [more]
A0A6J1HGT13.3e-25100.00uncharacterized protein LOC111463349 OS=Cucurbita moschata OX=3662 GN=LOC1114633... [more]
A0A5A7SNJ63.4e-2290.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BIW23.4e-2290.91uncharacterized protein LOC103490081 OS=Cucumis melo OX=3656 GN=LOC103490081 PE=... [more]
A0A0A0KZI34.4e-2289.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G294910 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022963015.16.8e-25100.00uncharacterized protein LOC111463349 [Cucurbita moschata] >XP_022972765.1 unchar... [more]
KAG7027319.16.8e-25100.00hypothetical protein SDJN02_11331 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023517883.18.8e-2598.18uncharacterized protein LOC111781491 [Cucurbita pepo subsp. pepo][more]
XP_038881285.11.8e-2292.73uncharacterized protein LOC120072840 [Benincasa hispida][more]
XP_008447675.17.0e-2290.91PREDICTED: uncharacterized protein LOC103490081 [Cucumis melo] >KAA0032622.1 unc... [more]
Match NameE-valueIdentityDescription
AT3G46430.14.1e-2070.91unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G59613.14.1e-2070.91unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G59613.24.1e-2070.91unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 50..55
NoneNo IPR availablePANTHERPTHR34565TRANSMEMBRANE PROTEINcoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G010250.1CmoCh07G010250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane