CmoCh07G002630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G002630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ribosomal RNA-processing protein 17
Location	Cmo_Chr07: 1290696 .. 1293605 (-)
RNA-Seq Expression	CmoCh07G002630
Synteny	CmoCh07G002630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGGTATTAGGTGTCCCCCGCCGCGCGAACCGAATTTAATGTGACGCAGAGAGTGTTACTGGGCGCTGCGATGGTGAAGAACGAAGCGGAGGAAGGGGGGGCGCTCACACAGCCTCATGCTCGACACATAAAGAAGAAAGCTCTAAAGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTGAGGTTTTCCTTCAAACTCAGCACGAACTTGATTGATTGGGAATTTTATATGATATCGATTTCTATCTGTTTTCTTGTTGGGTTCTTTCATTTTTTTTTTTTGAATTTTTCTTAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCGGAAAAGCAACAAGAGGAAGCTAAGCGGCGGAAGCGCATCGAAGAACGCAAAAAGGTTTGACATACGTTTCTATTTCTGAAAGGGAACTGCTGTAAACAGATAACTATTTTGTCTTTAGGATGATGACATTTTACAGTTTACAGGGAAAGAAATAGCTACAATGATAGTTCCGGAATTGAAATTTTTCTGTGAACAATACTACTTTTCTAGCTCAATGAACTTAGGATAGCGCATGAACAAATCTTTTCTGGTACATTGTTGATTTCCCAACAGAACTGCAAAAGCATTGGGATTCTCAGTGGCTAGAACGAGAACCAAACACAACACACCATTAGTCTCACGAAAGGTTAAATACTTCCTTCGGACTCCGGAGATGAGGCTGGTTGTGAGCTAAAGATCCCAATGTTGTTTTTCCACCTTGGATTTGTCCCAAGGTTATATGAATTTATTTCAATCCTTAGTTTCATAGGTCGAAATGGGTATTTAGGAGACTTGCACTTCTCTCTCTTTCACTGAGCTACGGGCAATGATTTTTGAACTTAGTTGTACGTTCATCAGGATAGAAAAGTTAGAAGGCATGGTTATGAATTTTTTATAAATTATAATTTGAACTTTCTTGGAGAACAATAAAAGAATGTATAAGTGCTTTCAATGCTACAAGAAAGAGTTCTAATACAAAAAAAATGGGACCTAGCTACACTGAGTCTTGAAGCGTTGAACCTAATAAGAATAGCCTCCCATAACTCTCTCAAATCTCTATAACACCTCTAAAAAGTCTACCATTCCTCTCAAGCCATATCCCTCAAAGAATGGCAACAAGACAAGTCTACCCAAGAATTTTGCTCTTCTGAAGTGAGGAAACAACAAAACCTCCCACATCAAACCTGCTATGAAAATCTTGGGATTGGGATTTGATCTAATAACCTTGTTGAAGAACAAGACCTTTAGATCTAAAGTATCCCCGAAACTCCAAAAACGATAAGGAATCAATCCAAGGGAAAGTTTTGGAATGAATTACCTTAGATGATCAATATTAAGAGTAAAGAAAACTCGTGATTTGAATCACTCTACAAGATAGCATCATGAAGTTTATGTGGCATGATTTCACTTTATTTTGTATCAAACCCTACACTCCCTGCATGTTTCTTCTATTAGGCTTGCACGCAAGGATGTACAGTTTATCTTTAGAAGTAGGACTATCAGATCATTCCCTCTGACAAAAATTTCAATAGCTTTAAGATTTTGACCATTCTACTGCCGCAACTAATACAGCTGGTGGTAAGGGAGGGTTAGGAAGGTGATTTAAGTCAGTTGTGAGAAATTGCCTCTAGCTTTGTTTTGTTGATTTTAATTGTGAACCTCCCTATAATGATCGTTCAACTAAAATGCTACTAATTAGTCGTCATTTATGCATTGTATTTTATGAATATTTTTATTGCATAAGTTGTGTAAAATATTATTGACAAGAGGAAACAAGAAAGAGAACAGCCTTTGGTGCATGTGTCCTTTTCTTCTATATCATCTGGGTTACATTTTCTGAAAGTCATAAATTATCTTGCAGAGAAAAATAGAAAAAGATCTGGTGCTACATGGCGGTGTTCTACCAGCTGACCGGCCAGTTGATGAGCAGAACGATGATCTCAAGGACGGGGATGAGGATGAGGAAGAGAAGCCATTGGCACCAATTTCTGGTATTTTTCTAGCAATTGCACATTAAGCTATCAAAAGCATGTGATAATCCGTTTGCACCAGTTTGCTTAGAACACAGTTGTGTTCAATTAATCAAAATGGCAGATAATAGTTACAAGTTCTTCCCTAATACAAGGGGCCGAAGAAGTGTCGATCTTAAAAAATCAGATCAGATATTATTCTTTTCACAGGGAAGCTAAAAGTCGGGTTATATATGAAAAATAACTTGGAAGTTGATAACATTGATAATGATATGCATTCATTGAGAAACTCTGAATCTTGGAAGAGGCTTCCAATAATCAAACACTGGAAGTGTCATCTATGTTATAGAGATACATGTCGTATTATTTTGATCCAAACGTGCTTTTGGTCCTTTCTGTAGAGACAACAATGTATGACAGTGGAAACATCAAAGTCACTGTGACAACAAGTGAGGTACGTCGTGACGAAGAAATTGATCCCATTGACAAGCCACAGGCATCAACATCCCAACTTCTTGCAAAGGATAAGAAGCACAGCCTGCCAATTACCAAAAAGAAGCCATTCAAGAAAGTTGCAAGAAAGAAGTCAAGGTCAAAGTCCCGTAGTAAAACAGACAAAAAGAAAGGAAGGAAAAAGAAATAGGTAATACTAAAAGCTTTTTGCTCACTCTTTTCTAAATCTGCAATGTAATGACTTATATGTTATCTCTTGAGAATAGGGTGTGATCTTGAGAATGGGCTGGTAGGGGGTTTGAGGGTTTTGTATTACTTTGTAAAAGGTTGGCCATTTTGCAAACTGAAAGTGCAATTTTCTTTTTTATGAGAAGCTGAAATGATTCTCTCATTATTCCAAGAAGACAAACATTAGATTGCAACTCATCTAAGA

mRNA sequence

CTTGGTATTAGGTGTCCCCCGCCGCGCGAACCGAATTTAATGTGACGCAGAGAGTGTTACTGGGCGCTGCGATGGTGAAGAACGAAGCGGAGGAAGGGGGGGCGCTCACACAGCCTCATGCTCGACACATAAAGAAGAAAGCTCTAAAGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCGGAAAAGCAACAAGAGGAAGCTAAGCGGCGGAAGCGCATCGAAGAACGCAAAAAGAGAAAAATAGAAAAAGATCTGGTGCTACATGGCGGTGTTCTACCAGCTGACCGGCCAGTTGATGAGCAGAACGATGATCTCAAGGACGGGGATGAGGATGAGGAAGAGAAGCCATTGGCACCAATTTCTGAGACAACAATGTATGACAGTGGAAACATCAAAGTCACTGTGACAACAAGTGAGGTACGTCGTGACGAAGAAATTGATCCCATTGACAAGCCACAGGCATCAACATCCCAACTTCTTGCAAAGGATAAGAAGCACAGCCTGCCAATTACCAAAAAGAAGCCATTCAAGAAAGTTGCAAGAAAGAAGTCAAGGTCAAAGTCCCGTAGTAAAACAGACAAAAAGAAAGGAAGGAAAAAGAAATAGGTAATACTAAAAGCTTTTTGCTCACTCTTTTCTAAATCTGCAATGTAATGACTTATATGTTATCTCTTGAGAATAGGGTGTGATCTTGAGAATGGGCTGGTAGGGGGTTTGAGGGTTTTGTATTACTTTGTAAAAGGTTGGCCATTTTGCAAACTGAAAGTGCAATTTTCTTTTTTATGAGAAGCTGAAATGATTCTCTCATTATTCCAAGAAGACAAACATTAGATTGCAACTCATCTAAGA

Coding sequence (CDS)

ATGGTGAAGAACGAAGCGGAGGAAGGGGGGGCGCTCACACAGCCTCATGCTCGACACATAAAGAAGAAAGCTCTAAAGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCGGAAAAGCAACAAGAGGAAGCTAAGCGGCGGAAGCGCATCGAAGAACGCAAAAAGAGAAAAATAGAAAAAGATCTGGTGCTACATGGCGGTGTTCTACCAGCTGACCGGCCAGTTGATGAGCAGAACGATGATCTCAAGGACGGGGATGAGGATGAGGAAGAGAAGCCATTGGCACCAATTTCTGAGACAACAATGTATGACAGTGGAAACATCAAAGTCACTGTGACAACAAGTGAGGTACGTCGTGACGAAGAAATTGATCCCATTGACAAGCCACAGGCATCAACATCCCAACTTCTTGCAAAGGATAAGAAGCACAGCCTGCCAATTACCAAAAAGAAGCCATTCAAGAAAGTTGCAAGAAAGAAGTCAAGGTCAAAGTCCCGTAGTAAAACAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

Protein sequence

MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

Homology

[Close]

BLAST of CmoCh07G002630 vs. ExPASy TrEMBL
Match: A0A6J1EG67 (ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC111433808 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.5e-93
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180
           TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK
Sbjct: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180

Query: 181 SRSKSRSKTDKKKGRKKK 199
           SRSKSRSKTDKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of CmoCh07G002630 vs. ExPASy TrEMBL
Match: A0A6J1KRQ7 (ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.6e-90
Identity = 192/198 (96.97%), Postives = 196/198 (98.99%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNEA EGGALTQP++RH+KKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAAEGGALTQPYSRHVKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180
           T YDSGNIKVTVTTSEVRR+EEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK
Sbjct: 121 TTYDSGNIKVTVTTSEVRREEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180

Query: 181 SRSKSRSKTDKKKGRKKK 199
           SRSKSRSKTDKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of CmoCh07G002630 vs. ExPASy TrEMBL
Match: A0A6J1CL67 (ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC111012309 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.4e-70
Identity = 161/198 (81.31%), Postives = 175/198 (88.38%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKN+ +EGG L QP  RHIKK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIE RKKRK EK+LVL+GG+LPADRPVDEQNDD     E+EEEKP APISET
Sbjct: 61  QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDD----HEEEEEKPFAPISET 120

Query: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180
           T YDSGNIKVTV TSEV RD EI PIDK Q +T+QL+AKDKKH+LPITKKKPFKKVA++K
Sbjct: 121 TTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQK 180

Query: 181 SRSKSRSKTDKKKGRKKK 199
           SR K RSK DKKKGRKKK
Sbjct: 181 SRPKPRSKRDKKKGRKKK 194

[Close]

BLAST of CmoCh07G002630 vs. ExPASy TrEMBL
Match: A0A1S3C1A3 (ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.6e-69
Identity = 157/198 (79.29%), Postives = 173/198 (87.37%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKN+ EEGG L QPHARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           +EEA RR RIE RKKRK+EKDLVL+GGVLPADR VD+QNDD     EDEEE+PLAP SE 
Sbjct: 61  KEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQNDD----QEDEEEEPLAPFSEA 120

Query: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180
             YD+GN+KVTVTTSEV R+ EIDPIDKPQ + +QLL KDKKH+LPITKKK FKKVA+++
Sbjct: 121 RTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQR 180

Query: 181 SRSKSRSKTDKKKGRKKK 199
           SR K RSK DKKKGRKKK
Sbjct: 181 SRPKLRSKRDKKKGRKKK 194

[Close]

BLAST of CmoCh07G002630 vs. ExPASy TrEMBL
Match: A0A0A0KYB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.9e-68
Identity = 156/200 (78.00%), Postives = 175/200 (87.50%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           +EEA RR RIE RKKRK+EKDLVLHGGVLPADR VD+QNDD      +EEE+PLAP+SE 
Sbjct: 61  KEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQNDD----QGNEEEEPLAPLSEA 120

Query: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQAS--TSQLLAKDKKHSLPITKKKPFKKVAR 180
           T YD+GN+KVTVTTSEV R++EIDPIDKPQ +  T+QLL KDKKH+LPITKKK FKKVA+
Sbjct: 121 TTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAK 180

Query: 181 KKSRSKSRSKTDKKKGRKKK 199
           ++ R K RSK DKKKGRKKK
Sbjct: 181 QRGRPKLRSKRDKKKGRKKK 196

[Close]

BLAST of CmoCh07G002630 vs. NCBI nr
Match: XP_022926799.1 (ribosomal RNA-processing protein 17 [Cucurbita moschata])

HSP 1 Score: 350.9 bits (899), Expect = 7.2e-93
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180
           TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK
Sbjct: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180

Query: 181 SRSKSRSKTDKKKGRKKK 199
           SRSKSRSKTDKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of CmoCh07G002630 vs. NCBI nr
Match: XP_023517913.1 (ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 346.7 bits (888), Expect = 1.4e-91
Identity = 195/198 (98.48%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIEERKKRKIEK+LVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180
           T YDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLP+TKKKPFKKVARKK
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180

Query: 181 SRSKSRSKTDKKKGRKKK 199
           SRSKSRSKTDKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of CmoCh07G002630 vs. NCBI nr
Match: KAG7026594.1 (hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 345.5 bits (885), Expect = 3.0e-91
Identity = 194/198 (97.98%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIEERKKRKIEK+LVLHGGVLPADRPVDEQNDDLKDGDEDEEE+PLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEERPLAPISET 120

Query: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180
           T YDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLP+TKKKPFKKVARKK
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180

Query: 181 SRSKSRSKTDKKKGRKKK 199
           SRSKSRSKTDKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of CmoCh07G002630 vs. NCBI nr
Match: KAG6594625.1 (hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 343.6 bits (880), Expect = 1.1e-90
Identity = 193/198 (97.47%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIEERKKRKIEK+LVLHGGVLPADRPVDEQNDDLKDGDEDEEE+PLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEERPLAPISET 120

Query: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180
           T YDSGNIKVTVTTSEVRRDEEI+PIDKPQASTSQLLAKDKKHSLP+TKKKPFKKVARKK
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEINPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180

Query: 181 SRSKSRSKTDKKKGRKKK 199
           SRSKSRSKTDKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of CmoCh07G002630 vs. NCBI nr
Match: XP_023003425.1 (ribosomal RNA-processing protein 17 [Cucurbita maxima])

HSP 1 Score: 340.9 bits (873), Expect = 7.4e-90
Identity = 192/198 (96.97%), Postives = 196/198 (98.99%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNEA EGGALTQP++RH+KKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAAEGGALTQPYSRHVKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180
           T YDSGNIKVTVTTSEVRR+EEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK
Sbjct: 121 TTYDSGNIKVTVTTSEVRREEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180

Query: 181 SRSKSRSKTDKKKGRKKK 199
           SRSKSRSKTDKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of CmoCh07G002630 vs. TAIR 10
Match: AT1G11240.1 (CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink). )

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-33
Identity = 104/191 (54.45%), Postives = 135/191 (70.68%), Query Frame = 0


Query: 7   EEGGALTQP-HARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAK 66
           EE G+L  P  ARHI K+A KNK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA 
Sbjct: 8   EEAGSLATPTSARHIGKRARKNKSLTVSFDEKDLKDFVTGFHKRKKKRRKEAQKQQEEAF 67

Query: 67  RRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISETTMYDS 126
           RRKRIE RK RK+E+ +V   G    D   +++ D      EDEE +P A  S TTMYD+
Sbjct: 68  RRKRIEARKNRKLEELMVAGNGEDNEDGEAEDEVD-----AEDEEAEPDASTSATTMYDT 127

Query: 127 GNIKVTVTTSEVRRDEEIDPI--DKPQASTSQLLAK-DKKHSLPITKKKPFKKVARKKSR 186
           G +KVTVTTSE+ R+EE +PI  +K Q++ S   AK   K  +P+ K KP K+ +R++S 
Sbjct: 128 GELKVTVTTSEISREEE-EPIRKEKTQSTESGSTAKASTKQPVPVRKTKPMKQ-SRRRST 187

Query: 187 SKSRSKTDKKK 194
           +K+  K DKKK
Sbjct: 188 TKTMKKRDKKK 191

The following BLAST results are available for this feature:

BLAST of CmoCh07G002630 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh07G002630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EG67	3.5e-93	100.00	ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC11143380...	[more]
A0A6J1KRQ7	3.6e-90	96.97	ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 ...	[more]
A0A6J1CL67	1.4e-70	81.31	ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S3C1A3	4.6e-69	79.29	ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3...	[more]
A0A0A0KYB4	3.9e-68	78.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=3 SV=1	[more]

BLAST of CmoCh07G002630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926799.1	7.2e-93	100.00	ribosomal RNA-processing protein 17 [Cucurbita moschata]	[more]
XP_023517913.1	1.4e-91	98.48	ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]	[more]
KAG7026594.1	3.0e-91	97.98	hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6594625.1	1.1e-90	97.47	hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023003425.1	7.4e-90	96.97	ribosomal RNA-processing protein 17 [Cucurbita maxima]	[more]

BLAST of CmoCh07G002630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11240.1	1.4e-33	54.45	CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 47..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..198
IPR019186	Nucleolar protein 12	PFAM	PF09805	Nop25	coord: 21..119 e-value: 5.0E-17 score: 62.7
IPR019186	Nucleolar protein 12	PANTHER	PTHR14577	NUCLEOLAR PROTEIN 12	coord: 11..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G002630.1	CmoCh07G002630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003723	RNA binding