CmoCh06G016870 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G016870
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionFBA_1 domain-containing protein
LocationCmo_Chr06: 11640487 .. 11641860 (-)
RNA-Seq ExpressionCmoCh06G016870
SyntenyCmoCh06G016870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCTCGTTGTCGCTGTGGCGTTTCTGAGCAACAGTCCCGCCGTTGACGCCGCCAGAATAGTGCCCGGAGACTTTGCGAGCGCCAATCACTTGGAGATGTACCCGTCGGCGTACGAGCATGCGAAGAATACGGTGTCGTGTTGGCTCGGCCGCTTGTCGTCCGGCCCCAGCCCCAAAGGTCCCGGCCACTGATTTCTCCGCAGCCAACCGGCCGTCGTTCGCCGTACCAGCGCTTTGCTGAAGCCCATCTTCCTTTTCTCCCTCTGTTCGTTTTTTCAATTCATTTGATGTATTTATTTTATTATTTATAGTTAAGTGTCAAAAGACCAAAATGGTCAAAGGTTCTTTTATTTTAGCGACATTTAAGTATGAGAAATTCGGATATTTACGTCTTTAGATCTGAATTTTTCTATTTATTTGCAATGATATGATATTAATGAAAATTAAAAGAAGACAAATATAATAAATTTGAAATAGGAATTTTATTTATTATTTGTCCGCTATTTTATTATGATTCATGTCTAACACGTTAATATATTGATACATGAGAAATTGCTTAATGTAAGTGTATGAATTAAATTTTAATACAGTGAACGTATATTAAAATTTCGTCTTTTAAATTGATGTTCTAACTCACTTAAATACCACAAAAAATTTAAACCCGTCAAATTAATAATAGAAGAGGCTCGATAAATTGCTTACAAATTTAAAATTATTCGTAAAAAATTGATCTTTAAAGTTTTGGTTTCGAGTTTAGCAATATTTGGAGGTGGGAAATTAAAATTTTGAGCTGTTGGTTGAGATATTAAGTTTCAATGTTAAATCCAACGTGATTATATACAGAACATACAATAAGTATGGATTAACCGAAAGTGGATTAAAAATTAATGAGAGAAATGAACCAACCAGAATATGCTTGAAGGGCAGGCAAAGCCACGTAGCTGGGAAACGACCAAACAGGCTTTCATCACAATGGGGGGATAAGAGCCGAAAATGGAAACCGCCCAATTTCAGTCTGTGAAAGAAGATGTGTAGGAAAGTGCTTTGCCCACATCCGCCACTACCACTTTCATTTTCCATTGAACACAATCGGAGTGCTTGCCTACTCTAATCTGCCCATTTCTCAGCGGGTAAGTGATGATTTCTTCATGGGTTTTCATCCCCCACTTCGATTGCATCGTTTTCTTTGGATATTTGATATACCCTTTTCGTAGAATTGATATGGACGGTGTTGTTTTTGATATCATTGCTTGTCAGAGTGTAACCTAGAACCGTGGTGGCCGGAGAAGTGGATTTATTGCTCTGTGGTGTACCGTTTATGTGCTATTAGTGTCTTTTGATTTTGGTTCTGAAATTCTTGGTCTCCGTTGA

mRNA sequence

ATGATCCTCGTTGTCGCTGTGGCGTTTCTGAGCAACAGTCCCGCCGTTGACGCCGCCAGAATAGTGCCCGGAGACTTTGCGAGCGCCAATCACTTGGAGATGTACCCGTCGGCGTACGAGCATGCGAAGAATACGGTGTCGTGTTGGCTCGGCCGCTTGTCGTCCGGCCCCAGCCCCAAAGGAAAGTGCTTTGCCCACATCCGCCACTACCACTTTCATTTTCCATTGAACACAATCGGAGTGCTTGCCTACTCTAATCTGCCCATTTCTCAGCGGAACCGTGGTGGCCGGAGAAGTGGATTTATTGCTCTGTGGTGTACCGTTTATGTGCTATTAGTGTCTTTTGATTTTGGTTCTGAAATTCTTGGTCTCCGTTGA

Coding sequence (CDS)

ATGATCCTCGTTGTCGCTGTGGCGTTTCTGAGCAACAGTCCCGCCGTTGACGCCGCCAGAATAGTGCCCGGAGACTTTGCGAGCGCCAATCACTTGGAGATGTACCCGTCGGCGTACGAGCATGCGAAGAATACGGTGTCGTGTTGGCTCGGCCGCTTGTCGTCCGGCCCCAGCCCCAAAGGAAAGTGCTTTGCCCACATCCGCCACTACCACTTTCATTTTCCATTGAACACAATCGGAGTGCTTGCCTACTCTAATCTGCCCATTTCTCAGCGGAACCGTGGTGGCCGGAGAAGTGGATTTATTGCTCTGTGGTGTACCGTTTATGTGCTATTAGTGTCTTTTGATTTTGGTTCTGAAATTCTTGGTCTCCGTTGA

Protein sequence

MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPKGKCFAHIRHYHFHFPLNTIGVLAYSNLPISQRNRGGRRSGFIALWCTVYVLLVSFDFGSEILGLR
Homology
[Close]
BLAST of CmoCh06G016870 vs. ExPASy TrEMBL
Match: A0A0A0KU27 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011070 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.2e-20
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 1  MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK 60
          ++LVVA+  LSNS  VDAAR+VPGDFAS NHLEMYPSAYE AK+TVSCWLGRLSSGPSPK
Sbjct: 11 IVLVVALTLLSNSSTVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWLGRLSSGPSPK 70

Query: 61 G 62
          G
Sbjct: 71 G 71

[Close]
BLAST of CmoCh06G016870 vs. ExPASy TrEMBL
Match: A0A5C7IW37 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_001325 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 9.4e-12
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 1  MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK 60
          ++LV++VA LS+   V+A R++P DFAS NHLE Y S YE AK T+ CWLGRL+SGPSPK
Sbjct: 11 IVLVISVAILSH-VGVEATRVLPEDFASENHLETYSSVYEKAKTTMGCWLGRLASGPSPK 70

Query: 61 G 62
          G
Sbjct: 71 G 70

[Close]
BLAST of CmoCh06G016870 vs. ExPASy TrEMBL
Match: A0A200QEF4 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8801g22 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.1e-11
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 0 

Query: 2  ILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPS-AYEHAKNTVSCWLGRLSSGPSPK 61
          IL++ VA L+ S  V+AAR++  DFASANHL  YPS  YE AK+T++CWLGRL+SGPSPK
Sbjct: 12 ILIIGVAILNRS-GVEAARVLSEDFASANHLVTYPSTVYEKAKSTMTCWLGRLASGPSPK 71

[Close]
BLAST of CmoCh06G016870 vs. ExPASy TrEMBL
Match: A0A2P2J3U6 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.0e-11
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 0 

Query: 1  MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK 60
          ++ V+++A LS    V+AAR +P DFA A HLE Y S YE AKNT++CWLGRL+SGPSPK
Sbjct: 11 LVFVISLAILS-QVKVEAARALPEDFAGAAHLETYSSVYEKAKNTMACWLGRLASGPSPK 70

Query: 61 G 62
          G
Sbjct: 71 G 70

[Close]
BLAST of CmoCh06G016870 vs. ExPASy TrEMBL
Match: A0A200QE97 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8801g23 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-10
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 2  ILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYP-SAYEHAKNTVSCWLGRLSSGPSPK 61
          IL++ VA LS S  V+A R++  DFASANHL  YP + YE AK+T++CWLGRL+SGPSPK
Sbjct: 12 ILIIGVAILSRS-GVEATRVLSEDFASANHLVTYPNTVYEKAKSTMTCWLGRLASGPSPK 71

[Close]
BLAST of CmoCh06G016870 vs. NCBI nr
Match: KAG6597679.1 (hypothetical protein SDJN03_10859, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-41
Identity = 92/118 (77.97%), Postives = 93/118 (78.81%), Query Frame = 0 

Query: 1   MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK 60
           MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK
Sbjct: 11  MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK 70

Query: 61  -------------------------GKCFAHIRHYHFHFPLNTIGVLAYSNLPISQRN 94
                                    GKCFAHIRHYHFHFPLNTIGVLAYSNLPISQR+
Sbjct: 71  GFHHNGGIRAENGNRPISVCERRCVGKCFAHIRHYHFHFPLNTIGVLAYSNLPISQRS 128

[Close]
BLAST of CmoCh06G016870 vs. NCBI nr
Match: KAG6582005.1 (Membrane-associated 30 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.6 bits (270), Expect = 3.9e-20
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 1   MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK 60
           MILVV VAFLSNS AVDAAR+VPGDF+S ++LEMYP+AYE AKNTVSCWLGRLSSGPSPK
Sbjct: 252 MILVVVVAFLSNSAAVDAARVVPGDFSSVSNLEMYPTAYEQAKNTVSCWLGRLSSGPSPK 311

Query: 61  G 62
           G
Sbjct: 312 G 312

[Close]
BLAST of CmoCh06G016870 vs. NCBI nr
Match: KGN53012.2 (hypothetical protein Csa_023800, partial [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-19
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 1   MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK 60
           ++LVVA+  LSNS  VDAAR+VPGDFAS NHLEMYPSAYE AK+TVSCWLGRLSSGPSPK
Sbjct: 52  IVLVVALTLLSNSSTVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWLGRLSSGPSPK 111

Query: 61  G 62
           G
Sbjct: 112 G 112

[Close]
BLAST of CmoCh06G016870 vs. NCBI nr
Match: TXG72746.1 (hypothetical protein EZV62_001325 [Acer yangbiense])

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-11
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 1  MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK 60
          ++LV++VA LS+   V+A R++P DFAS NHLE Y S YE AK T+ CWLGRL+SGPSPK
Sbjct: 11 IVLVISVAILSH-VGVEATRVLPEDFASENHLETYSSVYEKAKTTMGCWLGRLASGPSPK 70

Query: 61 G 62
          G
Sbjct: 71 G 70

[Close]
BLAST of CmoCh06G016870 vs. NCBI nr
Match: OVA08795.1 (hypothetical protein BVC80_8801g22 [Macleaya cordata])

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-10
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 0 

Query: 2  ILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPS-AYEHAKNTVSCWLGRLSSGPSPK 61
          IL++ VA L+ S  V+AAR++  DFASANHL  YPS  YE AK+T++CWLGRL+SGPSPK
Sbjct: 12 ILIIGVAILNRS-GVEAARVLSEDFASANHLVTYPSTVYEKAKSTMTCWLGRLASGPSPK 71

The following BLAST results are available for this feature:
BLAST of CmoCh06G016870 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh06G016870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KU277.2e-2081.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011070 PE=4 SV=1[more]
A0A5C7IW379.4e-1262.30Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_001325 PE=4 SV=1[more]
A0A200QEF46.1e-1163.93Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8801g22 PE=4 SV=1[more]
A0A2P2J3U68.0e-1160.66Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A200QE971.8e-1062.30Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8801g23 PE=4 SV=1[more]
BLAST of CmoCh06G016870 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6597679.11.4e-4177.97hypothetical protein SDJN03_10859, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6582005.13.9e-2085.25Membrane-associated 30 kDa protein, chloroplastic, partial [Cucurbita argyrosper... [more]
KGN53012.21.5e-1981.97hypothetical protein Csa_023800, partial [Cucumis sativus][more]
TXG72746.11.9e-1162.30hypothetical protein EZV62_001325 [Acer yangbiense][more]
OVA08795.11.3e-1063.93hypothetical protein BVC80_8801g22 [Macleaya cordata][more]
BLAST of CmoCh06G016870 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37245:SF4PAMP-INDUCED SECRETED PEPTIDE 1coord: 2..61
IPR040273PAMP-induced secreted peptide 1PANTHERPTHR37245PAMP-INDUCED SECRETED PEPTIDE 1coord: 2..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G016870.1CmoCh06G016870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
cellular_component GO:0016020 membrane