CmoCh06G016500 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G016500
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr06: 11458468 .. 11460162 (-)
RNA-Seq Expression	CmoCh06G016500
Synteny	CmoCh06G016500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGACGGGAGGACAAGCATAGCCGTGCAAGTATTCAATTCCCCTTGCTGCTTGGACTGCAATGGTGACCCTTCTTATCCAATCTAGTTGCTCTTTCAAGGCCTTGTTCTTGCCATGAAGGTGCTGATATAAGGAACCATGAGCCATGAACTCATAAACTAGAAGCCTCTCTCCACCTTCTTCACAATAACCAAGTAGATTAAGCAAATGAGCATGGTTTAATCTTGACAGCAAGTCAAGTTCAGTGTGAAACTCTTTTGAATTCTTCTGCTTGTTGTGAGACATTATAGCTCGTTTCACTGCTACAACCGTCCCGTTGTTTAAAACACCTCGGAAAACACAGGAGAAACTTCCCTTTCCCACCATTGAATCTTCCTTAAACCCGCACGTCGCTCCCACGAGTTCTTCGTAAGTGAACATCCGAGCCCTCATTATCTTTAGCTCATCTAAGTCGGGACGTATTTTGTAGCTTTCCTTCTGGAAGGAAGAGGCAGTCCCTTGGTTCTTCTTAGACTTCAACTCCTTTTCGGAACAATGGAAGCTCCGTAACTTATACCGAACGTATAAGATCGCAGTTAGCGACACAATAGCTACCAAAAACAGAGCAAAAGCAACCTCTGCTACCAGAGCTGGAAGCTGCATTGACCACAACTTCTCATTTTTCTTCCCCATCAAGCCATTTGAACTAATGGATGAACAGTTTGATGAACACTCCGAAGAAAAACAACTTGAACAGTTATATTCACATTGTCTATCAGATTTTAAGGAGCATTCAAATTTTTGGTACATCTCAGGAGGGCATGTAGTACTGCAGGGCATACACACACGAAAACTCGGCGACTTGCACCGAGCACTGTCTTGGCTTAGTTCATAGAAACCAGGAGCACAAGGAGTTGCTTTACAGACTCCAGGCGACACAGCTAAGGGTATAGAACTAGGAAATCCAAGACCCCAGCAAACAGGCAGGAGAGATTTCTCAGCTAGAATTCCACAAGTGAAGTAATCTCCAGCTGCTATGTCATAAACCTTAATCCCATCCGGCGCTGGAGTGCTTGGTTTGACTGTAAAGCCCCAACAAATCACACCACGGTCCATGCTCTTGATCCCACAAGCATGAAACTTGCCCCCAACAACAGAGTCTAATGGATCAACTGGAACCAAGTCTGCACTTCCTTCAATGTCTAAGCTCCTTCCCCAACAGAACGCCCTCGCCTTAATGCCCTCTAGAATCCCACAAACATGATATCCACCAGCAGCAATCTTTAGAAACCTCATATCTTTAGGTATCAAACTGATGACCCGGCTGCTCGTCTCATCGCCCCAACACAAAACAGTTCTATTAAGAGAAAACAGCCCACAGTTGAACTCAGACCCTGCCGAGATCGATTCAATCGGGCCATCAAACACAAAGGTTCTTGTCATGTTGTAACCCCAACAATCAACAAAAGACGTGTTGTTCCTATGCCTTCCAGTTAGCGGTGTTCGGAGGCCACAGAGATGGTAATCACCAGCACTGATTTCCTGGTATTGAGCGGCTTTGATCATGGGCTGAGGAACACCCATTTGAACATAGCCACTGCTTCCCCAACAGTAAGGCTGGTTGGAATCCAAAAGAAGCCCACAAACAAAACCATCACCAGCAGTGAGACCAATGAAGGGGAAATGAGAAGGAGTTCCGTAAGTTATGGCTGA

mRNA sequence

ATGGATGACGGGAGGACAAGCATAGCCGTGCAACTTTCCTTCTGGAAGGAAGAGGCAGTCCCTTGGTTCTTCTTAGACTTCAACTCCTTTTCGGAACAATGGAAGCTCCGTAACTTATACCGAACGTATAAGATCGCAGTTAGCGACACAATAGCTACCAAAAACAGAGCAAAAGCAACCTCTGCTACCAGAGCTGGAAGCTGCATTGACCACAACTTCTCATTTTTCTTCCCCATCAAGCCATTTGAACTAATGGATGAACAGTTTGATGAACACTCCGAAGAAAAACAACTTGAACAGTTATATTCACATTGTCTATCAGATTTTAAGGAGCATTCAAATTTTTGGTACATCTCAGGAGGGCATAAACCAGGAGCACAAGGAGTTGCTTTACAGACTCCAGGCGACACAGCTAAGGGTATCAAACTGATGACCCGGCTGCTCGTCTCATCGCCCCAACACAAAACAGTTCTATTAAGAGAAAACAGCCCACAGTTGAACTCAGACCCTGCCGAGATCGATTCAATCGGGCCATCAAACACAAAGCGGTGTTCGGAGGCCACAGAGATGGTAATCACCAGCACTGATTTCCTGGTATTGAGCGGCTTTGATCATGGGCTGAGGAACACCCATTTGAACATAGCCACTGCTTCCCCAACAGTAAGGCTGGTTGGAATCCAAAAGAAGCCCACAAACAAAACCATCACCAGCAGTGAGACCAATGAAGGGGAAATGAGAAGGAGTTCCGTAAGTTATGGCTGA

Coding sequence (CDS)

ATGGATGACGGGAGGACAAGCATAGCCGTGCAACTTTCCTTCTGGAAGGAAGAGGCAGTCCCTTGGTTCTTCTTAGACTTCAACTCCTTTTCGGAACAATGGAAGCTCCGTAACTTATACCGAACGTATAAGATCGCAGTTAGCGACACAATAGCTACCAAAAACAGAGCAAAAGCAACCTCTGCTACCAGAGCTGGAAGCTGCATTGACCACAACTTCTCATTTTTCTTCCCCATCAAGCCATTTGAACTAATGGATGAACAGTTTGATGAACACTCCGAAGAAAAACAACTTGAACAGTTATATTCACATTGTCTATCAGATTTTAAGGAGCATTCAAATTTTTGGTACATCTCAGGAGGGCATAAACCAGGAGCACAAGGAGTTGCTTTACAGACTCCAGGCGACACAGCTAAGGGTATCAAACTGATGACCCGGCTGCTCGTCTCATCGCCCCAACACAAAACAGTTCTATTAAGAGAAAACAGCCCACAGTTGAACTCAGACCCTGCCGAGATCGATTCAATCGGGCCATCAAACACAAAGCGGTGTTCGGAGGCCACAGAGATGGTAATCACCAGCACTGATTTCCTGGTATTGAGCGGCTTTGATCATGGGCTGAGGAACACCCATTTGAACATAGCCACTGCTTCCCCAACAGTAAGGCTGGTTGGAATCCAAAAGAAGCCCACAAACAAAACCATCACCAGCAGTGAGACCAATGAAGGGGAAATGAGAAGGAGTTCCGTAAGTTATGGCTGA

Protein sequence

MDDGRTSIAVQLSFWKEEAVPWFFLDFNSFSEQWKLRNLYRTYKIAVSDTIATKNRAKATSATRAGSCIDHNFSFFFPIKPFELMDEQFDEHSEEKQLEQLYSHCLSDFKEHSNFWYISGGHKPGAQGVALQTPGDTAKGIKLMTRLLVSSPQHKTVLLRENSPQLNSDPAEIDSIGPSNTKRCSEATEMVITSTDFLVLSGFDHGLRNTHLNIATASPTVRLVGIQKKPTNKTITSSETNEGEMRRSSVSYG

Homology

[Close]

BLAST of CmoCh06G016500 vs. ExPASy TrEMBL
Match: A0A2P2NJN7 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.1e-14
Identity = 50/88 (56.82%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 41  RTYKIAVSDTIATKNRAKATSATRAGSCIDHNFSFFFPIKPFELMDEQFDEHSEEKQLEQ 100
           RTYK A  DT  TKN AK  SA   G C D N  FFF +   E ++EQF++HS   QLEQ
Sbjct: 2   RTYKTAAVDTPTTKNTAKQISAIMTGKCTDQNSLFFFFLTEPEYIEEQFEKHSTAIQLEQ 61

Query: 101 LYSHCLSDFKEHSNFWYISGGHKPGAQG 129
           LYSH  SDFK HS FWYIS G +P  QG
Sbjct: 62  LYSHSRSDFKVHSVFWYISTG-QPLLQG 88

The following BLAST results are available for this feature:

BLAST of CmoCh06G016500 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G016500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P2NJN7	3.1e-14	56.82	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of CmoCh06G016500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmoCh06G016500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..253

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G016500.1	CmoCh06G016500.1	mRNA